CmaCh11G008380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G008380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	E3 ubiquitin ligase BIG BROTHER-like
Location	Cma_Chr11: 4226834 .. 4238415 (-)
RNA-Seq Expression	CmaCh11G008380
Synteny	CmaCh11G008380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCCAGAGGATGCCTCCACAGTAAAGATTTGAAGATTACGAGATATCGTTTAAAGTCTTGGGGTTCAAGCTTGTCTGACTTAAAACCATTGGTATCTCCCACTGCTAGCCTTGAGTCGGTGAAGTCTTTCGATGATTAGTGAGAGATCAACAATGAATATAAGACAGAGTGGGGCTCTCCAACACCTCGGTTCAAAAAAGAATATTTAATAAAAGAATGCTTTCTAGTCTAGAAGTGATTCTGAAGAGTCTTTGTTACCTTGAGATGATGAAGGTCTACCTCTCAAAGCCCACAAAGCTTCTGCAGAAGGATAATCACTTGAATCTTCTGAATGGTAAGAATTTGTTCTGTACTGTAAGCAATGAGCTCCTTTCAAGCCTTTTCAGTTTCTTGACTTTTTGCATTTTCTTGTCCAGTTATAGTTGAAGCATGGCATCTTGGAAAAAGCTTCAAATAATTGAAATGAAAGCTAAACAGGTTCATATTCAGCTCATTTATTCTTGCCTCACCCATTCTATAACAAGTCACCAGCGAGTTTTTTACATTGAAGCATATGTAATAGTGGTTGGTGGGTATGATGATTCAGGTTTATGTGCTCAACGCTAGTGGCATCTCGGTTTCTTAAACCATGTCCCTTTGATTCCTTTGGATGAAGCAATTTTGAAATGGAGGTAGAACATAAATTGGTTTAAATCTTATTTGGGTCTCAAACTGTTCATGTTACATTTTTTTTTTTTTGTTCTCAAATCTTTCATGTCCTTGAACTTTCAAATGTTATCTTCTAGTCAAACTTACCTAAAAAAACCATTTCAGTGTTGATTTTTCAAGAAATTATTGGAACAGAACTTTTATAGGCAATATTACTTACCTGACAAATAGATGTTTGCAAACGTAAGTATTTGCCTTATGTAATATATATATATATATATATATATATATAATGTCTGGTTAGAAAACATGTCGAGATTTGTTTTTAAAAAAATAAGATTAAGATCATATTTATGCAAAGTCTAGATATGAAAATAGAATATTTGAAGTTAAATAAAAGACTATAAATAAAACTATTAAAAGTTTTAACACCAAAATAAGATTTAAACCATATATTAAAGTTTGGTCTATAGTATCATATGGTTATGGTCGTGTGGGGAACTCGTTATGTTGACTTCGTGTGCTGCATCACATTGTGACCATGAAACCAGAAAAATTGTTAAGAACCTTTATTTGCTCTCCTTTGACTTTTGTCTTATGTACATTATCTGTTTGTTCATCAATGTGATTGTATACTCTTTCCCCAGATTTTGGAACTGGCCTGCCTGAGTGTTAAAGTGCCCATAGGAAGGAAAGGCTTTGAGATTCATGTTCTGAAAAGTGACCTTGTGGTCGGGATCGCACTTCAAAAGAAATAAAGCTCAATCCATGTGTCCGGTGTAACTGGGTTAGAGGGAAGACACAAAGATTGCCACCGACAAAATTGGCCCAACACTGACACTGAGATGTGAAAGACGAGGAGCGAATGAGATTAAATACCTCAAAAGTCCTACCCATAAATGATGGATATTAGGTATTGTGCATATTGACTTGTGCATACTAAAAGTATCACATTAGTGGGGAACGTGTGAAGTCTCATCTGAGATATCTCAGGAAGAAGATGAAAAAATCGTGGTCAGCCCATAACCCATTGACATGAGGTATGTTATTTCTTGCAAATCTAAGTGTCATGATTCATGGAACCATATATTCCAAGTTGTTTACGTGATTTTTCATAATATATTTACAGTCCCTTTTTGTGATACAAGTTACTGATGATCAAAGTAGAAGTCATTTTGTATTATATTTAAGGGATTTCTGTGTTAGGAGTGAAGAAATTCTTTTATGTTCCATTAAGAAAGAACGACCATGAACATAGTTGTTTGAATTTTAAAAAAGTTAAAGGTTAGGGTTGAGATGGAGACTAGGATGGAGATGTGTTGTACACTATAATAATTAAAAAGGCGGAGGATAAGTCTAGGGTGAAGATCCTATTTGGAAAAGGAATGCGGAATATATAATCAATTAAAGAAATTCTAAGTCAATGCCAGAGTTGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGACCTAATAATTATAAAGAATTTCAAGAACAAGGACACACAATACCTAATAAAAGTTCACAAGTAACTTTTTCTTAAAATAAAGTTGGGACTAAGGTTAGAGAGAGTTAGAGAAGTGTAACATGTAAGAATAATTACAAAACATTTAGTGGTCGAGACAAGTATTGGTGCAACACCCCAAGCCCGCCACTAGCATATATTGTCTTCTTTGAGCCATTTTCCTTTTGGGTTTCTCCTCAAGGTTTTAAAACGCGTCTGTTAGAGAAAGGTTTCCACACCCTTATAAATAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATTCACCCCTCTTTGGGGTCTAGCATCCTTGTTGACACTCGTTCCTTTCTCCAATCGATGTAAGACCCCCTCCCCCCAATCCGCTCCTCTTTGGGGTTCAGTGTCCTTGCTGGCACGCCGTCTCGTGTACACCCCACTTCGAGGCTCAGCCTCCTCGCTGGCACATCTCCCGATGTCTAGCTCTGATATCATTCGTAATGGCTCAAGTTCACCACTAGCAGATATTGTCCTCTTTGGGCTTTTCCTTTCGGGCTTCCCCTCAAGCTTTTTAAAATGCATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCGTCGTTCTCCTCTCAACCGATGTGAGATCTAAGACACGAAACAAACTATAAACTAAAAACCAAAAAACTTAGGATCAAAGTTAAGGATGTGGTATTCATTGTAGTAATTTTTAGTAAAGCTTAGGCTTGAATAAAGATCGGGTTTAAAGTGGGCGAGTACCTCGTGCCCTTATTTTCTACCCTTCCACCTATGTCACTTTCAAGTACATAATACTCTTTTACTGAAGGTCATCCAAACTCTTTGAAGAAGACACCCTCCAATGCTTGATCGAGTACTCACCAAGTTCCTAAAGTACACTAACTTATCCCTTTGTCGAAAGACTAACGCACTCCTCGAGATATGAATGAGGCCTTGATATGGATTACTTTAGTATTGTTGTACAAGATAGTTGGCCAACTACTTCCTATTTCTTAACCCAGAAAACATTTCAAATGTAAATCTTTAGATTTCGAGTGAAGTCAATAAAATTAGATCACCGAACGAGTAATTGTCACAACCACTATAGTTTCCAAAGGATTGAAGCATTGAAAGGTGAAAAACTGTAACATGATTGATTTGTTAAAGGGAAAAGAAATAGTAATGAGAGAAGAGAGTGGATGTGCGTTGCAGTTGTAGCAGATTAGGGAACAGAAGGAATAAAGAATAATATTCAGTGGTTGTCCTTTGCCTCCGCCTCAGGGTTTGGTCTTTCTCTTTCTGTTCCAGTTTCACATGTCTAAGTCTCTCAACTCTGACTGAAAAAGCAGTGTCTTATGTCCCATTTGCTAGGAGTTTTGTGATTGCTTTCTCCCATGCCAGACACCATCATCCAAATTGATTGGATTGACACCCATAATCACACTCAATTGCCCAACTAGTATTGAATCATCATTCTATTATTATTATTTTCCGCTGTTCATTAACTTTTCTGGTCCTGCTAGATTTAGCTCGTGTTTCTAAATGTCTAGCGATTTAGTCTATGAACTTCGGTACATAACCATTTCGTCTGGGTTGTTTAATCTTTGTAATGATTTAGTTTATGTTGCAAATACTGGTAATGTCTAGCGGAGTTCCTTATGTATATAGATTGATAAGTTGTCTACAAGTCGAGGCCCCTAATAATTAAAGTGTTCGTTGTGTGTTAGATCCCACATCAGTTGGGGAGGAGAACGAAACACCTTTTATAAGGGTGTGGAAACCTCTTCCTAGCAAATGAGTTTTAAAAATCTTGAGAGGAAGCCTGAAAGGGAAAGCCCAAAAATAAAAATATGTGCTAGCGGTGGGCTTGAACCGTAACAAATAGTATCAGAGCCAGACACCAAGCGATGTGCCAGCGAAAAGGCTGTTCTCTGAATGGGGGTAGACATGAGACGGTGTGCTAGTAAGGACGCTGGGCCTCGAAGGGGGGGGGGGGATTGTTAGATCCCACATTGGTTGGGGAGGAGAACGAAACACCTTTTATAAGGATATGGAAACCTCTTCCTAGCAAACGAGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGAAAAGCCCAAAAAAGACAATATCTGATAGCAGTGGGCTTGGACCGTTACGTTGTGATTGCCTTCAAAGAGTTCACCACAAGCCAATTTTAAAATGTGAATAGCTCGATATGAACTTTCTAAACAATCTTGAAAAGCACCAAAAACATTAAGAACTAAAGCATAGACTTACTTTTATTTCACTCAACCAATTGGCCTTTTTAGATATACCCTTTACTTTAATCTCTATTTCAATATGATATCCATATTCTTTTTTGTTATTTGTAGAATTTGGGTCCATATTTTAAAGCATTTGTCTTGATTCAAAAGTAGAAAAGAGGACCAATGAGGTAATGAGCATTAAGAATTGCTTTGAGGTATGCAAGCATATACTTATTATAATGTGTCTATGAACCTATGTTCATTCATTATGTCTTATGGAATCGAATGAGTCGACATGTAGGGTCTAGAGATTCCATATACAACCCGGTCACGATGCTTAATGTCAACTTATAGTCAAAACTTAGCTTTTATCTACATGGTACGTTGTGAACATTAGAGCTAAGATTTATTAAGATGACAAAATCACTGCACTCATGAACCACTTAACTTTGTTCAGGTCTGATAACTATTTAATTTTTAAAAATTAGGTGTACAAATATTAGTTTTACCTTGTTTCTTTGAAAACATTTAAGAAGATCGAGTTTAATTTTTTTTAAAAAAACAAAAAATTATATAATAATCATTGTATTAAAATCTTTTGATTTCTTTAAGATTATTAAATGAGTTTTTTTTTTTAATTTTAATAATCATTGTATTAAAATCTTTTGATTTCTTTCAAGATAATTAAATGAGTTTTTTTTTAATTTAGTTTATGATAATTTGAAATTTAATTATTTGGTATCTAAAATTCATTTTAAAAAATTATTATAATTCTCTTTAATCTCATCTCCTAAGTTCTTTATGCATGAAAACAATATTTAAACTTGAATTTAAAATATTATAATACTAATATTTAAACCCATATAGTAATTTATAGAAAATACAATATTGCTATATAAATTTAAATTTAAAGAAAAAAAACACTTTTTTTTTTTTTAATGTACTTCCATAAACTTTGCCTCCCTATTCTTAGATCTTCAAAAATAAAATTATTGAATTGGTTGAATATTGAAAAAGTCATCAAGCATGATTACATCGAAGAAAAACATATAAAGATGGGTGGAATAAAAAAAAAATGATTCGATGTAAAAAAAAAAAAAAAATTAAAGAGACTAAACTTTGTCTTGTCATCTGATGACGATGAAGACTGGTAATGAATAAAAATACCTGAGAAAAAGAAAACGAGCACTGCATAGCCAATGTCCTTTGAGTTTGGAGACTGTATGTATATCTTTTGATCTACATACATCCTAAATTGGGTAAATAAATTATTAGGTTGGAACCGAGTCGGAGAAACCGTTCATCAATGCCTATAAATATTTATCGTGGAACGAGATTTATTATTAGGTTGGAAGCGAGTCAGAGAAACTGCCCATCAATGTTTATTAATATTCATCTCCGTCTTTTAACCTAAACGGTTGAACGAGATTTTTCGATTGTGAACCAAACGGAAGAATCCAAGGAGAAAATGTGTTAGGAGAATGATTCTCAACAAAGCTTCCAACAATTACCAACTCACCTTTTCTTTCCAAATCAAGCCCAACCACTTCCAAACATATTTGCAATTTGGTCCTTTTTAAAACCCATTTTCTTGGTTTTCATCTATCCATTTTGCAATCCAACCCCTCAATTCATAAATTAATTCCATTTTAACCCCAACATTTAAATGTAAATATTTTATATTAACCAAATAGAAAAAAAAAATTATCAATATTAATGAAATTTTTATTTTTTTTAAAAAAAAACAAAGTTTAAGCCAAAATTTGCAAAGAAGCCCTTATATTTTGTCCAAATATGGAAGGAAGCCCTTATGACGCCCACGCGATCACCTGTCATTCAACGCGTGGCGCTCAGTCGCCTCCCACAAAAAGACAAACAGGCAATGCACTAAAATAATAATAATAATAAAATTAAATAATAAATAAATCAATCAATCAAAGTTATTTAATTTAGATCATAAATTTTAATTTTTGTATAGTTTTAAAAATTTCAAATTAATTTCTATAATTGGGTTAAATCATATAAAACTTAATTATTATTTTTTAATTAGTTTATTTTGCATATATAATTCGACCCAAGGTTCTTATACCAGCTTGAACTCAATAAAATAAAATAAAAACAAACACATTTTATTTCATGGTCGGAGGAAAATTGAAAGATAATCCGTAGTAATTTTAAGGATTCTCGAGAGTAAAAATAAAGATGTCTCCTACGTTACCCAAATAGGTAGAGTTTTAAGTTTATAGAGTTATTTGATTTCAGTGCCAACACTCAAACCCATTAGTAGGCTTTTCCTCTCGGGCTTCTTCACAAGGTGTTTCGTTCCTCAATTGATGTGGGATCTCACAATCCACCCCTAGGGAGTCTAACGTGCTCGCTGACACACCGCCCAGTGTCTAATTTTGATACCATTTGTCACAGTCCAACTGCCCCGTGTCTGACCTAAGGCTTTTCCTTTTGCACTTCTCCTCAAGGTTTTAAAATGGGTTTTATAGGAAAAGATTTCCACACCCTTGAAAATAATGTTTTGTTTCACTCTCCAACTAACGTGAGATCTAACATACATGAAGAACTTTAGTTGGATGAACGAGAAGACCTAGAATATAAGAAATTACCAACCCGAGTGATTCAATCGAAATACTGCTCGTGGTGAGACGCGGATTTAATAATTAAAATAATATATTTGGAAAAAAAAATAACTAAAGAAAAAAGTTAGATTTGATTAAATCATAGAGCATTAGGGAAGAGAATGAAAATGGAATCTGTTGTGGGAGGCAAACTCGAACAAGGAGGAGGCTCTGAATTCTCACCAACAACAAGAAAACGAGCGAGAGAGAGCGAGAGAAATTATCGTAGCCTTCAATTCCCAAATTCGCCGAGAAATCTATAGAACCATACCCAAACCAACCACAATCAATCATTCAACCATAGACCCTCTCTCTCTCTCTCTTTTCGCCATCAAAAGCGATCATTGTCGATTTCTTTAATCTCTTCCCTCTTCCTTTGGAATCAATCCCTTTTCTTTTCCGATTTCACTTTGTTTTTGTTTCCGAGGCCGACCCTTTATCTTTCTTCGTCTCTTTCATCCGCTTCCCTGTTCTTCTCTCTGTTTCTGTTCTTCTGCATTCCCCCTTCACTTGTTCCACCAACTGGGTTCTTCTGCTGAGCTTTTGGTTTGTTGGGTTTCGGCGTCGGAGCTGCTTGGTTGTGTTGTGCGCATCGCTCCGGCGTTGAAATGTGAGTTTTGAGAAGCTACATTTTGATTCACTCTGTTTTTTCTTTTTGTTTCTGTTTGTGTAGGAAGAAATGCTAGCTGATTGTCGAATGGTTGGTTGGTTGATTGTTTGTGGGTAATTTGGATGGAACAAGGGAAATTTGAGTATGGATAATTGCTTGCATGATTTCCCTTTTGTGGTTTAGTGTTGGGTTTGATGTATGTTCTTAATCATCAACAATGAGGGAGGGAGTCCAATTCCGATGATGCTCTTTGATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATTGTTAATTCGTTTCTTATGGGATCTGGGTTGTGTTAGCTCGAAGATTTGCTGAGAGATGGATTTGGCTGCGACAGATAATGTCTTGACTGATTTTTGTAATTTGTGCTGTGTTTTACTGAATTACAGCTGCTTCTTTAATCTAGGAGATACTAAACTCTTGGGTCTGGTTGTTCTTGCCCTGGTTCTCACGTTTAAGGGCAAAATGAAACTGGGTTTACTTGTGCTGGAACAGTTTAGTTTAGCTGTGCTGTAGGCTTTGGAGTGGCTTTTTGCTGTTTTGATTTCTTGCTTGCAATGTTCTTTTGGTTTTATGATGTTTCTGCAATGTACAGAAGCTTTGGTGGATTCATTTGTATATGAAATGAGTTGGAACAACACGCATACAGAAGTTCATCATGTTAATACCCCTTATCCTTATAACACTGCTGGGAGTTTCCTGGAATATTTTGAAGGTCTTACCTACGAACATGTAAATTTCATATTTTCGGGCACTTCACATTCTCAGGTACTTTCGATCCGCTTGCTTCTTTGTTCCAAACAGCTGTACTTGATTTGTTAACCTATGCAATCGGGAGTCGTTTTTCTTTTTTTTTTTCGATATGCTGTTCTTTTGTCGTTCCTACTTCATGGAAGATTATCTCCTTTGTTTGTGAAATGAAGGATTTAATGTATTGGAGAAGTCTCTTTGCATTTCTTTGTTTTTTCTTCTTCTTACCTCCGTTTTCGAGTCGAATCTACTTTCAAGTTGAAAGTTGCCTTACCCTCTTTATAAACGATATGCTAGCAAAAGAAGTTTCGCACTGAACCGTAGTGCTATGCTCTCGAGTTTCTTGAATTAATTTGAACTGTAAATGGAGAATGACAATGTAACTCATTTAAGTTTCACATTTGCAGGAGACTGTTTATCCTCCTCTGAATTCGAACTTTTACAAGTTTGGGTTTTCAGATTTTGGGAGTCCTACCTATTACAACCCACCTCAAGCTTATAGGGTGCATGATCAAGAGCCCATAATTTATGAACATAGTAGGCTAGAAAACTCAGCAACGCAGCCTGATGTACAGAGTACAGTAAATCTTGAATTTGAAGAATTTGCAAATACTACAGCATTTGACAACCACGTAGAATGTAAGTGATAGCTTTCGGTAATTAGATAATTTCCATCCCTAGAAAAAGGTTTTTCCAATTGTTCTCTATCTGTTTGGTTCACCATTGAGGTTTCGTGGAGGTATGCAAAATATTTACTTCTAAAACTGCAAGATCCCACATCGGTTGGAGAGGGGAGTGAAACATTCCTTATATGGGTATGGAAACCTCTCCCTAGCAAACACATTTTAAAACCGTGAGGTTGACGGCAATACGTAATGAGCAAAAACGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATGGTATTAGAGCCAGACACTGGGCAGTGTGCCAGTGAAGATGCAGGTCCCCAAAGGGGGGTGGATTATGAGATCCCACATAAGTTGGAGAGGAGAATGAAACATTGCTCGTAAGGGTGTGGAAACCTATCTCTAGAAAATGCGTTTTAAAACCGTTAGGTTGACGGCGATACATAACGGGCCAAAGCGGACAATATATGCTAGCAGTGGGCTTGGGCTGTTACAAAATCAATGTTCACAGCAGGAGTGAAACATCAAAAGATACAGGCATCAATTTCATTTTTCATTGCTTCTGAGGTTTATTTGTTTATTTATATTTTAAGTTTAAGATTCATTGGCATAGAGTATGACATAATTGAGATGAACAGATACAATTAGATATATATTGTTGAGGAATACCGGTGTTCATATCCGTACTTCATTTCTCAAGAGCTCGTGTGCTTAAGGTTATATCTTGAGAAAACACTGCATACAAGGATGAACTTAAGAACTCTTGTAGATGATTCTTATAAGTTGTTTAATTGAACACCAAAAAAGAATACGGTTCTTAAAATATAGATTTCCTTTGAATTTAGTTATTACTTCACCTTAAATGGTGCATAGTTTTCCTCTCTCTGATAGCTCTAACGGTAGACTCGAACAATTCTCTTTCGCTTTCTCTCAGGTCCAAGAGGACGCCATAATTCACATGATTTTCAGGTTTGTGGCTTTTATATGGTTTGCAGATCAACTTTCTACCTGAAACATGTTTATAAAACTTGTTTGGCCTGGTGCTTTTGTTCACGATCGTTGACGAACGGATGCTTTATCTAAGTGTAGGTTGTTTGGCAAGACAATGTCGATCCTGATAATATGACTTATGAGGTTAGTTCATTTGGAAAAAATTACTTGTTTTACGGAACTTGCTTCAACAAAAGGGTACCGACACCCGAAACCGACACAATGTATTAAAATATCCATAGCTACATAGGCTGAAATAAGTTTTCTGTTGGGTAACTAGTTTGAAAAAGTTGTAGGGGCCACTATATAGGCCTGCTGTACATTTTTCTAAGTAATATTTAACAACTTTCATCCTGTATGGCCTCTGATTCTCTTGAACTATCTGTAATTTTTTACAATACTTGGATAAAAATCTAATTATATTTCGAGTTCAGGAATTACTAGAGTTGGGTGAGACAGTTGGAACTCAAAGTCGAGGTCTTTCACAGGAATTGATTGCTTTGCTTCCGATATCGAAGTACAAATATAGTTTCTTCTCGAGGAAAAAATCTCGTAGAGAGAGGTATGTGATAGTTCATAATGTTTCTTTCCTTGACGTTTATTTGTCTCTGAGATTGACTCGTAATCGTGCTATCCTCATTATGTCACGTACTTCCGAAGATCGCTGAATGAACGTTTTGGACTCGATGCTTTTCTATTATATCATACCTGCATCTGATTGAGAGTCCAGTTTGTTCCTGTCTACTTCTTTGAATCTCATATACTTTTCTGGATGTAGATGTGTGATATGCCAAATGGAATATAAACGAGGCGATCGGCGGATCACTCTGCCATGCAAACATATCTACCATGCTGGTTGTGGAACCAAATGGCTCAGCATCAACAAGGTATTACTATTAGTTTAGTTAGACTGAATGTGTGCTGTCATTGTTGACTGATATAACTCGAGACCTCTGTTCCGTTACAGCTTTGCCTAGAACTTCCAAAGCTTTTACCCGTAGACTTTGAACCCAATTCTCATCCTCCTTTTAAAACATATCACCCCGCTCTTTTCTCATTCATATGCATCTCAAAACCGACCAAGCAAGGGTTAACGTTGTGTAGTCGGGAATAGAGTAGTAACAGCTAATAGCTAGCCTATTCACTCAACCTTCCTTAAAGGGCTTCCTTTTTTCATTTCCTTGATTTGTCTATTAGGTAAATTTGGCTTCGCATAATAACCACATTCATTCCGTAGCTAAAACGGGTATTCGAAGGTAAACTTTTAGGTGTCGTTTAGCATAACAAAAAGTGTAGCATCGAATACCCGTGTTATGAATGAGTGAGTGAGTAATAACGTTATGGTTTTGCAGGCTTGCCCCATATGTTACACAGAGGTGTTTGGTGATACTTCAAAACACTGA

mRNA sequence

CTGCCCAGAGGATGCCTCCACAGTAAAGATTTGAAGATTACGAGATATCGTTTAAAGTCTTGGGGTTCAAGCTTGTCTGACTTAAAACCATTGGTATCTCCCACTGCTAGCCTTGAGTCGGTGAAGTCTTTCGATGATTAGTGAGAGATCAACAATGAATATAAGACAGAGTGGGGCTCTCCAACACCTCGGTTCAAAAAAGAATATTTAATAAAAGAATGCTTTCTAGTCTAGAAGTGATTCTGAAGAGTCTTTGTTACCTTGAGATGATGAAGGTCTACCTCTCAAAGCCCACAAAGCTTCTGCAGAAGGATAATCACTTGAATCTTCTGAATGTTATAGTTGAAGCATGGCATCTTGGAAAAAGCTTCAAATAATTGAAATGAAAGCTAAACAGGTTTATGTGCTCAACGCTAGTGGCATCTCGGTTTCTTAAACCATGTCCCTTTGATTCCTTTGGATGAAGCAATTTTGAAATGGAGATTTTGGAACTGGCCTGCCTGAGTGTTAAAGTGCCCATAGGAAGGAAAGGCTTTGAGATTCATGTTCTGAAAAGCCGACCCTTTATCTTTCTTCGTCTCTTTCATCCGCTTCCCTGTTCTTCTCTCTGTTTCTGTTCTTCTGCATTCCCCCTTCACTTGTTCCACCAACTGGGTTCTTCTGCTGAGCTTTTGGTTTGTTGGGTTTCGGCGTCGGAGCTGCTTGGTTGTGTTGTGCGCATCGCTCCGGCGTTGAAATAAGCTTTGGTGGATTCATTTGTATATGAAATGAGTTGGAACAACACGCATACAGAAGTTCATCATGTTAATACCCCTTATCCTTATAACACTGCTGGGAGTTTCCTGGAATATTTTGAAGGTCTTACCTACGAACATGTAAATTTCATATTTTCGGGCACTTCACATTCTCAGGAGACTGTTTATCCTCCTCTGAATTCGAACTTTTACAAGTTTGGGTTTTCAGATTTTGGGAGTCCTACCTATTACAACCCACCTCAAGCTTATAGGGTGCATGATCAAGAGCCCATAATTTATGAACATAGTAGGCTAGAAAACTCAGCAACGCAGCCTGATGTACAGAGTACAGTAAATCTTGAATTTGAAGAATTTGCAAATACTACAGCATTTGACAACCACGTAGAATGTCCAAGAGGACGCCATAATTCACATGATTTTCAGGTTGTTTGGCAAGACAATGTCGATCCTGATAATATGACTTATGAGGAATTACTAGAGTTGGGTGAGACAGTTGGAACTCAAAGTCGAGGTCTTTCACAGGAATTGATTGCTTTGCTTCCGATATCGAAGTACAAATATAGTTTCTTCTCGAGGAAAAAATCTCGTAGAGAGAGATGTGTGATATGCCAAATGGAATATAAACGAGGCGATCGGCGGATCACTCTGCCATGCAAACATATCTACCATGCTGGTTGTGGAACCAAATGGCTCAGCATCAACAAGGCTTGCCCCATATGTTACACAGAGGTGTTTGGTGATACTTCAAAACACTGA

Coding sequence (CDS)

ATGAGTTGGAACAACACGCATACAGAAGTTCATCATGTTAATACCCCTTATCCTTATAACACTGCTGGGAGTTTCCTGGAATATTTTGAAGGTCTTACCTACGAACATGTAAATTTCATATTTTCGGGCACTTCACATTCTCAGGAGACTGTTTATCCTCCTCTGAATTCGAACTTTTACAAGTTTGGGTTTTCAGATTTTGGGAGTCCTACCTATTACAACCCACCTCAAGCTTATAGGGTGCATGATCAAGAGCCCATAATTTATGAACATAGTAGGCTAGAAAACTCAGCAACGCAGCCTGATGTACAGAGTACAGTAAATCTTGAATTTGAAGAATTTGCAAATACTACAGCATTTGACAACCACGTAGAATGTCCAAGAGGACGCCATAATTCACATGATTTTCAGGTTGTTTGGCAAGACAATGTCGATCCTGATAATATGACTTATGAGGAATTACTAGAGTTGGGTGAGACAGTTGGAACTCAAAGTCGAGGTCTTTCACAGGAATTGATTGCTTTGCTTCCGATATCGAAGTACAAATATAGTTTCTTCTCGAGGAAAAAATCTCGTAGAGAGAGATGTGTGATATGCCAAATGGAATATAAACGAGGCGATCGGCGGATCACTCTGCCATGCAAACATATCTACCATGCTGGTTGTGGAACCAAATGGCTCAGCATCAACAAGGCTTGCCCCATATGTTACACAGAGGTGTTTGGTGATACTTCAAAACACTGA

Protein sequence

MSWNNTHTEVHHVNTPYPYNTAGSFLEYFEGLTYEHVNFIFSGTSHSQETVYPPLNSNFYKFGFSDFGSPTYYNPPQAYRVHDQEPIIYEHSRLENSATQPDVQSTVNLEFEEFANTTAFDNHVECPRGRHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIALLPISKYKYSFFSRKKSRRERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKACPICYTEVFGDTSKH

Homology

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BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot
Match: Q8L649 (E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.4e-53
Identity = 109/254 (42.91%), Postives = 154/254 (60.63%), Query Frame = 0


Query: 4   NNTHTEVHHVNTPYPYNTAGSFLEYFEGLTYEHVNFIFSGTSHSQETVYPPLNSNFYKFG 63
           N    + H+  T +PY   GS+++++ G     +N+  + T H Q+ +Y  +N+N YKFG
Sbjct: 5   NRPVEDAHYTETGFPYAATGSYMDFYGGAAQGPLNYDHAATMHPQDNLYWTMNTNAYKFG 64

Query: 64  FSDFGSPTYYNPPQAYRVHDQEPIIYEHSRLENSATQPDVQSTVNLEFE---------EF 123
           FS   + ++Y    +Y ++D        SR+    T  D    VN+  +         + 
Sbjct: 65  FSGSDNASFYG---SYDMND------HLSRMSIGRTNWDYHPMVNVADDPENTVARSVQI 124

Query: 124 ANTTAFDNHVECPRGRHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIA 183
            +T       EC    H+    QV WQD++DPD MTYEEL+ELGE VGT+SRGLSQELI 
Sbjct: 125 GDTDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIE 184

Query: 184 LLPISKYKY-SFFSRKKSRRERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKAC 243
            LP  KYK+ S FSRK++  ERCVICQ++YK G+R++ LPCKH+YH+ C +KWLSINK C
Sbjct: 185 TLPTKKYKFGSIFSRKRA-GERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVC 244

Query: 244 PICYTEVFGDTSKH 248
           P+C +EVFG+ S H
Sbjct: 245 PVCNSEVFGEPSIH 248

[Close]

BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot
Match: Q9LT17 (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-25
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 133 SHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIALLPISKYKYSFFSRKKSR 192
           SH  Q  W D +DPD ++YEELL LG+ VGT+SRGLS + IA LP  +YK      +   
Sbjct: 228 SHTSQDAW-DEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEG--DNQNGT 287

Query: 193 RERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKACPICYTEVFGDTS 246
            E CVIC+++Y+  +  I LPCKH YH+ C   WL INK CP+C  EV   TS
Sbjct: 288 NESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTS 337

[Close]

BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot
Match: Q9ZQF9 (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-15
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 144 VDPDNMTYEELLELGETVGTQSRGLSQELIALLPISKYKYSFFSRKK----SRRERCVIC 203
           +D DNM+YEELL LGE +G  S GLS+E+I L  + ++K++  S          E C IC
Sbjct: 601 LDVDNMSYEELLALGERIGDVSTGLSEEVI-LKAMKQHKHTSSSPSSVELHQNIEPCCIC 660

Query: 204 QMEYKRGDRRITLPCKHIYHAGCGTKWLSINKACPICYTE 240
           Q EY  GD   TL C H +H  C  +W+ I   CPIC TE
Sbjct: 661 QEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICKTE 699

[Close]

BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot
Match: Q7XTV7 (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-14
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 144 VDPDNMTYEELLELGETVGTQSRGLSQELIALLPISKYKYSFFSRKKS-RRERCVICQME 203
           +D DNM+YEELL L E +G  S GLS+E +  L + + K+S +  + S   E C ICQ E
Sbjct: 568 LDIDNMSYEELLALEERIGNVSTGLSEEEVTKL-LKQRKFSSWRLEASVEEEPCCICQEE 627

Query: 204 YKRGDRRITLPCKHIYHAGCGTKWLSINKACPIC 237
           Y  GD   TL C H +H GC  +WL +   CPIC
Sbjct: 628 YVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPIC 660

[Close]

BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot
Match: O49500 (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 50/131 (38.17%), Postives = 65/131 (49.62%), Query Frame = 0


Query: 108 NLEFEEFANTTAFDNHVECPRGRHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRG 167
           NL FE++     FD  +   +G    HD        +D DNM+YEELL LGE +G  S G
Sbjct: 538 NLRFEDY---MVFDPLIY--QGMAEMHDRH--RDMRLDVDNMSYEELLALGERIGDVSTG 597

Query: 168 LSQELIALLPISKYKYSFFSRKKSRRERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWL 227
           LS+E+I  +       S  +      E C +CQ EY  GD   TL C H +H  C  +WL
Sbjct: 598 LSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWL 657

Query: 228 SINKACPICYT 239
            +   CPIC T
Sbjct: 658 MLKNLCPICKT 661

[Close]

BLAST of CmaCh11G008380 vs. TAIR 10
Match: AT3G63530.1 (RING/U-box superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 6.7e-54
Identity = 109/254 (42.91%), Postives = 154/254 (60.63%), Query Frame = 0


Query: 4   NNTHTEVHHVNTPYPYNTAGSFLEYFEGLTYEHVNFIFSGTSHSQETVYPPLNSNFYKFG 63
           N    + H+  T +PY   GS+++++ G     +N+  + T H Q+ +Y  +N+N YKFG
Sbjct: 5   NRPVEDAHYTETGFPYAATGSYMDFYGGAAQGPLNYDHAATMHPQDNLYWTMNTNAYKFG 64

Query: 64  FSDFGSPTYYNPPQAYRVHDQEPIIYEHSRLENSATQPDVQSTVNLEFE---------EF 123
           FS   + ++Y    +Y ++D        SR+    T  D    VN+  +         + 
Sbjct: 65  FSGSDNASFYG---SYDMND------HLSRMSIGRTNWDYHPMVNVADDPENTVARSVQI 124

Query: 124 ANTTAFDNHVECPRGRHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIA 183
            +T       EC    H+    QV WQD++DPD MTYEEL+ELGE VGT+SRGLSQELI 
Sbjct: 125 GDTDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIE 184

Query: 184 LLPISKYKY-SFFSRKKSRRERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKAC 243
            LP  KYK+ S FSRK++  ERCVICQ++YK G+R++ LPCKH+YH+ C +KWLSINK C
Sbjct: 185 TLPTKKYKFGSIFSRKRA-GERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVC 244

Query: 244 PICYTEVFGDTSKH 248
           P+C +EVFG+ S H
Sbjct: 245 PVCNSEVFGEPSIH 248

[Close]

BLAST of CmaCh11G008380 vs. TAIR 10
Match: AT3G63530.2 (RING/U-box superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 6.7e-54
Identity = 109/254 (42.91%), Postives = 154/254 (60.63%), Query Frame = 0


Query: 4   NNTHTEVHHVNTPYPYNTAGSFLEYFEGLTYEHVNFIFSGTSHSQETVYPPLNSNFYKFG 63
           N    + H+  T +PY   GS+++++ G     +N+  + T H Q+ +Y  +N+N YKFG
Sbjct: 5   NRPVEDAHYTETGFPYAATGSYMDFYGGAAQGPLNYDHAATMHPQDNLYWTMNTNAYKFG 64

Query: 64  FSDFGSPTYYNPPQAYRVHDQEPIIYEHSRLENSATQPDVQSTVNLEFE---------EF 123
           FS   + ++Y    +Y ++D        SR+    T  D    VN+  +         + 
Sbjct: 65  FSGSDNASFYG---SYDMND------HLSRMSIGRTNWDYHPMVNVADDPENTVARSVQI 124

Query: 124 ANTTAFDNHVECPRGRHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIA 183
            +T       EC    H+    QV WQD++DPD MTYEEL+ELGE VGT+SRGLSQELI 
Sbjct: 125 GDTDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIE 184

Query: 184 LLPISKYKY-SFFSRKKSRRERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKAC 243
            LP  KYK+ S FSRK++  ERCVICQ++YK G+R++ LPCKH+YH+ C +KWLSINK C
Sbjct: 185 TLPTKKYKFGSIFSRKRA-GERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVC 244

Query: 244 PICYTEVFGDTSKH 248
           P+C +EVFG+ S H
Sbjct: 245 PVCNSEVFGEPSIH 248

[Close]

BLAST of CmaCh11G008380 vs. TAIR 10
Match: AT3G19910.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-26
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 133 SHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQELIALLPISKYKYSFFSRKKSR 192
           SH  Q  W D +DPD ++YEELL LG+ VGT+SRGLS + IA LP  +YK      +   
Sbjct: 228 SHTSQDAW-DEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEG--DNQNGT 287

Query: 193 RERCVICQMEYKRGDRRITLPCKHIYHAGCGTKWLSINKACPICYTEVFGDTS 246
            E CVIC+++Y+  +  I LPCKH YH+ C   WL INK CP+C  EV   TS
Sbjct: 288 NESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTS 337

[Close]

BLAST of CmaCh11G008380 vs. TAIR 10
Match: AT5G52140.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-23
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 111 FEEFANTTAFDNHVECPRG-RHNSHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLS 170
           +++  N +    H   P    HN  D      +N DP+NMTYEEL ELG++VG   +GLS
Sbjct: 145 YDDGENFSGRYTHTHSPSSISHNPTD-----DENNDPENMTYEELTELGDSVGDVGKGLS 204

Query: 171 QELIALLPISKYK------YSFFSRKK--SRRERCVICQMEYKRGDRRITLPCKHIYHAG 230
           QE I+ L   KY       Y    +KK  +   +C IC MEY +GD+  TLPCKHIYH  
Sbjct: 205 QERISRLRTHKYGTKTKSWYCLHMKKKFVADDSQCSICLMEYAKGDKITTLPCKHIYHKD 264

Query: 231 CGTKWLSINKACPICYTEVF 242
           C ++WL  NK C IC  EV+
Sbjct: 265 CISQWLKQNKVCCICKAEVY 279

[Close]

BLAST of CmaCh11G008380 vs. TAIR 10
Match: AT3G47180.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-20
Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 78  AYRVHDQEPIIYEHSRLENSATQPDVQSTVNLEFEEFANTTAF-------DNHVECPRGR 137
           A+ +HD  P +   S +E+     D +  +N  + E+ ++  F       +  +E     
Sbjct: 40  AHAMHDSSPSMI--SMIESDEESED-EEEINENYYEYFDSNGFGVDEDEINEFLEDQESN 99

Query: 138 HN--SHDFQVVWQDNVDPDNMTYEELLELGETVGTQSRGLSQ-ELIALLPISKYKYSFFS 197
            N    D  +  +D +DPD ++YEEL+ LG+ +G ++RGL+  E+   L  S Y    FS
Sbjct: 100 SNLEEEDDFLEEEDEIDPDQLSYEELIALGDFIGVENRGLTPIEISTCLNASTY---VFS 159

Query: 198 RKKSRRERCVICQMEYKRGDRRITL-PCKHIYHAGCGTKWLSINKACPICYTE 240
             K+  +RCV+CQME++  +  + L PC H YH+ C TKWL   K CPIC +E
Sbjct: 160 HNKNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPICCSE 206

The following BLAST results are available for this feature:

BLAST of CmaCh11G008380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L649	9.4e-53	42.91	E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE...	[more]
Q9LT17	3.7e-25	49.56	E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR P...	[more]
Q9ZQF9	3.5e-15	45.00	E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV...	[more]
Q7XTV7	1.0e-14	45.74	Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=399...	[more]
O49500	1.3e-14	38.17	E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV...	[more]

BLAST of CmaCh11G008380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63530.1	6.7e-54	42.91	RING/U-box superfamily protein	[more]
AT3G63530.2	6.7e-54	42.91	RING/U-box superfamily protein	[more]
AT3G19910.1	2.6e-26	49.56	RING/U-box superfamily protein	[more]
AT5G52140.1	4.7e-23	42.86	RING/U-box superfamily protein	[more]
AT3G47180.1	1.7e-20	33.53	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 196..236 e-value: 2.8E-5 score: 33.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 195..236 e-value: 3.7E-11 score: 43.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 196..236 score: 10.851695
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 158..241 e-value: 1.7E-17 score: 64.8
None	No IPR available	PANTHER	PTHR46400:SF5	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..246
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 195..241
IPR033276	E3 ubiquitin-protein ligase BIG BROTHER	PANTHER	PTHR46400	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G008380.1	CmaCh11G008380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046621	negative regulation of organ growth
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity