CmaCh11G007450 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G007450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein DEEPER ROOTING 1
Location	Cma_Chr11: 3626116 .. 3626782 (+)
RNA-Seq Expression	CmaCh11G007450
Synteny	CmaCh11G007450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATGGAAGCTAATGACACTACACTTATTGGCAAAAGAACTTTATCTCTCCTTCTCAAGAAAATTTTCGTCTGTGGAGGCGGTATCGCACCAGCTGCAGTTGCTCCTCCTCTGAGAACCCGAACTTTGGAGTTGAAAATAGAGAAGGTAAATCAAGAACATAGATCAATCAATGCTCAAATTCTCTGATAGCTGTTCTGGTGGGATCAGCGTTGATATCTTTTTGTATTCGAATATTGATAACTGTTTCTGCAAGTAACAGATGTTGAGAACAATACTCCATAAGAAGATATACCCCCAAAGCTTCAATGTCCAAACATCATCCATGAAGAAGTACCTGAGGAAGAAAAACAAGCGAAAAGACAAAAGTGAAGACGAAAAAGATGACAAGACTGGCGATGGAATTAAATGGGTCCAGACTGATTCCGAATGTCGGTATTAACAGTATAATCAGTATCCTATGGATCAACTTTCTAGTTCCATCAACCATGCATGCTTTTTCCATCACAAACACAATATGCTAATATGATTTTGCCATAATACTAATACACACAGAATTCTATAACTGTATTTAAAGGCTAACCTGATTGTGTGTTTCCATTTTCGTGTGCAGATATCGTTTTAGAAATCTGAGAAGCTACCTGCCATGTGAAGAAAAGATCAC

mRNA sequence

ATGGGCATGGAAGCTAATGACACTACACTTATTGGCAAAAGAACTTTATCTCTCCTTCTCAAGAAAATTTTCGTCTGTGGAGGCGGTATCGCACCAGCTGCAGTTGCTCCTCCTCTGAGAACCCGAACTTTGGAGTTGAAAATAGAGAAGATGTTGAGAACAATACTCCATAAGAAGATATACCCCCAAAGCTTCAATGTCCAAACATCATCCATGAAGAAGTACCTGAGGAAGAAAAACAAGCGAAAAGACAAAAGTGAAGACGAAAAAGATGACAAGACTGGCGATGGAATTAAATGGGTCCAGACTGATTCCGAATATATCGTTTTAGAAATCTGAGAAGCTACCTGCCATGTGAAGAAAAGATCAC

Coding sequence (CDS)

ATGGGCATGGAAGCTAATGACACTACACTTATTGGCAAAAGAACTTTATCTCTCCTTCTCAAGAAAATTTTCGTCTGTGGAGGCGGTATCGCACCAGCTGCAGTTGCTCCTCCTCTGAGAACCCGAACTTTGGAGTTGAAAATAGAGAAGATGTTGAGAACAATACTCCATAAGAAGATATACCCCCAAAGCTTCAATGTCCAAACATCATCCATGAAGAAGTACCTGAGGAAGAAAAACAAGCGAAAAGACAAAAGTGAAGACGAAAAAGATGACAAGACTGGCGATGGAATTAAATGGGTCCAGACTGATTCCGAATATATCGTTTTAGAAATCTGA

Protein sequence

MGMEANDTTLIGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTSSMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSEYIVLEI

Homology

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BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot
Match: A0A072TLV8 (Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN=NGR PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           IGK+++S LLKK+FVC  G AP    P LR    E ++EK+LRT+LHKK+Y Q+ N +  
Sbjct: 165 IGKKSISFLLKKMFVCRSGFAP---TPSLRDTLQESRMEKLLRTMLHKKLYTQN-NSRAP 224

Query: 71  SMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSEYIVLEI 113
            +KK L  K   K ++EDE +++  +G KWV+TDSEYIVLEI
Sbjct: 225 VLKKCLENKKSIKKRNEDEAEERIDEGSKWVKTDSEYIVLEI 262

[Close]

BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot
Match: A0A251PW43 (Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-16
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           IGK+++S LLKK+FVC  G AP    P LR    E ++EK+LR +L+KKI     + + +
Sbjct: 167 IGKKSISFLLKKMFVCRSGFAP---QPSLRDTLQESRMEKLLRVMLNKKIINPQGSSRAA 226

Query: 71  SMKKYLRKK---NKRKDKSEDEKDDKTGDGIKWVQTDSEYIVLEI 113
           SMKKYL  +    K++  +ED+  +K  +G KWV+TDSEYIVLEI
Sbjct: 227 SMKKYLEDRQIPTKKESNTEDDTKEKINNGCKWVKTDSEYIVLEI 268

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BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot
Match: Q5XVG3 (Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           + K ++S LLKK+FVC  G +P    P LR    E ++EK+LR +LHKK+  Q+ + QTS
Sbjct: 188 LSKTSVSHLLKKMFVCTEGFSPVP-RPILRDTFQETRMEKLLRMMLHKKVNTQASSKQTS 247

Query: 71  SMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSEYIVLEI 113
           + KKYL+ K +   K+E+E+   + DG KWV+TDS++IVLEI
Sbjct: 248 T-KKYLQDKQQLSLKNEEEEGRSSNDGGKWVKTDSDFIVLEI 287

[Close]

BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot
Match: Q58G53 (Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           I K ++S L KKIFVC  GI+  A +P LR    E ++EK+L+ +LHKKI  Q+ +  TS
Sbjct: 191 ISKNSVSYLFKKIFVCADGIS-TAPSPSLRDTLQESRMEKLLKMMLHKKINAQASSKPTS 250

Query: 71  -SMKKYLRKKNKRKDKSEDEKDDK---TGDGIKWVQTDSEYIVLEI 113
            + K+YL+ K +   KSE+E+  +   + DG KWV+TDS++IVLEI
Sbjct: 251 LTTKRYLQDKKQLSLKSEEEETSERRSSSDGYKWVKTDSDFIVLEI 295

[Close]

BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot
Match: Q1G3U5 (Protein LAZY 3 OS=Arabidopsis thaliana OX=3702 GN=LAZY3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-08
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 7   DTTLIGKRTLSLLLKKIFVCGGGI-APAAVAPPLRTRTL-ELKIEKMLRTILHKKIYPQS 66
           D T+  K++LS LLKK+FVC  G   P  +    R  +L   ++EKMLRTIL+KKI+PQ 
Sbjct: 78  DVTIGKKKSLSFLLKKMFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQR 137

Query: 67  FNVQTSSMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSE 107
            N   S  KKYL   +K  D++    D       KWV+TDSE
Sbjct: 138 SN---SIAKKYLESNHKIMDEARSSVDAN-----KWVKTDSE 171

[Close]

BLAST of CmaCh11G007450 vs. TAIR 10
Match: AT1G72490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           + K ++S LLKK+FVC  G +P    P LR    E ++EK+LR +LHKK+  Q+ + QTS
Sbjct: 188 LSKTSVSHLLKKMFVCTEGFSPVP-RPILRDTFQETRMEKLLRMMLHKKVNTQASSKQTS 247

Query: 71  SMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSEYIVLEI 113
           + KKYL+ K +   K+E+E+   + DG KWV+TDS++IVLEI
Sbjct: 248 T-KKYLQDKQQLSLKNEEEEGRSSNDGGKWVKTDSDFIVLEI 287

[Close]

BLAST of CmaCh11G007450 vs. TAIR 10
Match: AT1G17400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 11  IGKRTLSLLLKKIFVCGGGIAPAAVAPPLRTRTLELKIEKMLRTILHKKIYPQSFNVQTS 70
           I K ++S L KKIFVC  GI+  A +P LR    E ++EK+L+ +LHKKI  Q+ +  TS
Sbjct: 191 ISKNSVSYLFKKIFVCADGIS-TAPSPSLRDTLQESRMEKLLKMMLHKKINAQASSKPTS 250

Query: 71  -SMKKYLRKKNKRKDKSEDEKDDK---TGDGIKWVQTDSEYIVLEI 113
            + K+YL+ K +   KSE+E+  +   + DG KWV+TDS++IVLEI
Sbjct: 251 LTTKRYLQDKKQLSLKSEEEETSERRSSSDGYKWVKTDSDFIVLEI 295

[Close]

BLAST of CmaCh11G007450 vs. TAIR 10
Match: AT1G19115.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 7   DTTLIGKRTLSLLLKKIFVCGGGI-APAAVAPPLRTRTL-ELKIEKMLRTILHKKIYPQS 66
           D T+  K++LS LLKK+FVC  G   P  +    R  +L   ++EKMLRTIL+KKI+PQ 
Sbjct: 78  DVTIGKKKSLSFLLKKMFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQR 137

Query: 67  FNVQTSSMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSE 107
            N   S  KKYL   +K  D++    D       KWV+TDSE
Sbjct: 138 SN---SIAKKYLESNHKIMDEARSSVDAN-----KWVKTDSE 171

[Close]

BLAST of CmaCh11G007450 vs. TAIR 10
Match: AT1G19115.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 7   DTTLIGKRTLSLLLKKIFVCGGGI-APAAVAPPLRTRTL-ELKIEKMLRTILHKKIYPQS 66
           D T+  K++LS LLKK+FVC  G   P  +    R  +L   ++EKMLRTIL+KKI+PQ 
Sbjct: 78  DVTIGKKKSLSFLLKKMFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQR 137

Query: 67  FNVQTSSMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSE 107
            N   S  KKYL   +K  D++    D       KWV+TDSE
Sbjct: 138 SN---SIAKKYLESNHKIMDEARSSVDAN-----KWVKTDSE 171

[Close]

BLAST of CmaCh11G007450 vs. TAIR 10
Match: AT1G19115.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 7   DTTLIGKRTLSLLLKKIFVCGGGI-APAAVAPPLRTRTL-ELKIEKMLRTILHKKIYPQS 66
           D T+  K++LS LLKK+FVC  G   P  +    R  +L   ++EKMLRTIL+KKI+PQ 
Sbjct: 78  DVTIGKKKSLSFLLKKMFVCTSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQR 137

Query: 67  FNVQTSSMKKYLRKKNKRKDKSEDEKDDKTGDGIKWVQTDSE 107
            N   S  KKYL   +K  D++    D       KWV+TDSE
Sbjct: 138 SN---SIAKKYLESNHKIMDEARSSVDAN-----KWVKTDSE 171

The following BLAST results are available for this feature:

BLAST of CmaCh11G007450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A072TLV8	2.6e-18	50.98	Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN...	[more]
A0A251PW43	2.4e-16	47.62	Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1	[more]
Q5XVG3	3.0e-14	47.06	Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1	[more]
Q58G53	1.5e-13	46.23	Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1	[more]
Q1G3U5	5.5e-08	44.12	Protein LAZY 3 OS=Arabidopsis thaliana OX=3702 GN=LAZY3 PE=2 SV=1	[more]

BLAST of CmaCh11G007450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72490.1	2.1e-15	47.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G17400.1	1.1e-14	46.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19115.1	3.9e-09	44.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19115.2	3.9e-09	44.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19115.3	3.9e-09	44.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	PANTHER	PTHR34045:SF11	SUBFAMILY NOT NAMED	coord: 6..112
IPR044683	LAZY family	PANTHER	PTHR34045	OS03G0406300 PROTEIN	coord: 6..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G007450.1	CmaCh11G007450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0040008	regulation of growth