CmaCh11G006790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Saposin B-type domain-containing protein
Location	Cma_Chr11: 3287889 .. 3290740 (-)
RNA-Seq Expression	CmaCh11G006790
Synteny	CmaCh11G006790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTCGTTCGTTTGATTGATTTGATTTGATTTGATTTGATTTTGATTAGAACCGATTCCAATTTTCGTCCATTTCGGTGAAAAATCTTGTAGCGTAAAACACTTCTTCCACCATTGTTGGAATCCTCAATTCAAATTCTCTGAATCTTAAACAGAGAGCTTCGTGAAGAAGATGAATCGATTACTGAGTATTGTTTTGGTGCTTCTAGCCATTGCTTGGGTTCCGACGTTTGAGTGTTCGAAGAAGCTATCAACAGCTGCAAGGAGGGAGGACGTTCCGTACATCAAATGCCAGGTCTGCGAGAAGCTTGCTGTGCAGTTGTATCACCAAGTTGAGAAGAAACGAGCTGAGATCGCTCCCAAGAAGGTGATTCTTTATAGCTGATGTTTCATGGATCGGTTTTGGATTCTTTAATTTAGAGATTCAGATTATAATCAACTCCATTCATTTTTTTTCCTGCATTTGAATGTTTTCCCTTTCTTTTGGGGTTCTTGATGTAGATCTCCGAGTATCAAATTATCGAAATAGCTGAGAACGTATGTACTTTGAAGAAGGCAGAAGCTGATTGGATTTTGCAGATTGACATTGTTGAACAAGAGGATAGGCTTGAGGTAAGTGGAACTGAGATGAGATTTTGCTGTTTCAATACAACTAATGAATTTAGCTTTAAAATTTTGGTGACTTGTTATCACTGTTCGGGATTGGTATTTTCAACTTAGAAAATGAATGAAACGGTCCTATGAATCAAAACGAAATTTTCCGTTTACAATTATGATACTCAAAATATGAACGTATTTTGCCGACAAGCAACTCAAAATATGATAAATCTTGCCGGTTTATATTATTTTTATTACTTTATGAACATCTGTAAGCCATAACTCATTGAAGAACTATGTCTTCTTAGCTAGTGGAGCAGAACACCGAAGGACAATGCAATTCAGAGTGCAAGACTATTGAGCGTGCATGTCAAGAGGTATGTATTGCTTTGGCATTGAGTATGATGTTTATTAACCCTTATTAGCTGAAAGAATAAAAAATTAGTACAGCTTCAGAATCTGGGGAGATAAGAAACGAGAATCTCATTGTATTAATATATTATTGATGTTTTTATAAAAAAACCTTGACATAAACTAGTAGGAATAGTGTTCTTACTTCCTTAAGTAGTTTGTTTTTAGTAGATTACAAATCTTAATGAGGTCCACTGATTAGGTAAATGCAATATACACGACCAATACAAATAAATCAAGTAAAAGATGAACTAGAAGATTTTTTTTTTAAAAGAATAGCCAGGAGGAGTTTGCTGAATCTGAAGTGGTGTGTTTTGCTAGTATTGCTTTGACTTCGTGATAGAATAGATTCCCCATCGTGGGTTTACCAGAAAGAAAATATAGCAATTTCTTAAATTTGTTCTGTTGCCTTCGCAGGTCATGGGATTTTCTGATACTGATGTTGCTGAATACTTGTATAGCTCCAAACCAAAGATTGAATCGTTGGTTAACTATCTGTGCAAGGACCTCACTCAATCATGCAGTACTAAGCCGCCTCCAGTTCCAAAGGTAGCAACTAATCACATGCCGGTTTAACTGATTGATGAGATTATCCATCGTTTTTTGGTGTGAGCTAATTGTCATTGTCATTAAAATTCTGGGTTCTGGTACCTATTGGGACTAACTTGCCCTCTAATTATATGTTTTAGTTAAATTCCAATGGTCTGTTATACATTGGTTATTCGTTAGAGATTAAAATAATTTTGAAATCCAATTTGTTCGATATATCCGTTGGTTAGGTTGAGGAAGTGGAATCTCTTTAGGATCTACTCCAGCCAGCCAGCCAGCATCATTTAGAAATGGAGATAGTGAATAATTTTAATGATGCTTGTGGAAAAAATTGGGTTCATTTAATAATCATGTTATTAGTTTTGGTTAAGATGTGGTTTTGAGTTTTTGACATTTTAGTGTATTGAGATTCAGTCTTCTATAGTTGATCCTTGTATTGTATTATGATTCAGGACAGGACTCCAGGCGAGCCCTTCGTGGCCAAGTCAGCAAAGGAAGCCGAGATGGAAAAGATGTTGAGATCTATGGAGGTAATTAGTTCGTTGTTTTAGTGCTTGTTGGTCAACACTTCCTCAATTTCTAAGCCTCACCCACGCTCTTCACCTAAACCAGGGAATGCCAGGAGCACCCGGTATGAAAATGTATTCAAGAGATGATCTAATGAATATGAAGAATTTCGGAGGCGAAGATGACGATGAAGACGAGGAAGAAGATGATAAATTCCCTTCAAATTTGGTACTTGAAACATCTTTTATATGGCCAGAAGTTTCAGGAATTAATTATAAATGTTTTGCATAAACTTATTGGGAAACCTTTCTGCAGGGCAAAGTTTTGAGGGAGAAAGAGAGCAAGAAGAGTGATTGGAAAAACAGGATCACGAAGGGCGTTTCGAAGACAGGGGAAGCAATAAAAAAGCACGCTTACAGAGTCTCTAACAAAGTAAGGCAATGGTGGAGAGCGAAGTCCAGAGGCTTCAAAAGTTCAAAGCCCGCCGCCAAACAAGAACTGTAAAGTCTCTCAGTAACATTAAAGTTTAAATTCGTTGTATTTGCATCGCCCCATTAGGAAGTTAGCTAGTGAAACTGATAGCAAATACAGAAGAGTTCTTGTTCGAATCAATCAATGTTCTGAAATTTTGTAGTACTCTTCAGGAAGACTAAAGCCTTGGATTTGGAAATGTTGTTTTTTTTTTTACAACTTACATTATAAATTGCAAAAACTGTCAGGAATTGGGGGTACATTCTCCAATTGCTTGTGGCAGAAGAGGAACAATAAATTGTATTTAAAGCATCC

mRNA sequence

TTTTCTTCGTTCGTTTGATTGATTTGATTTGATTTGATTTGATTTTGATTAGAACCGATTCCAATTTTCGTCCATTTCGGTGAAAAATCTTGTAGCGTAAAACACTTCTTCCACCATTGTTGGAATCCTCAATTCAAATTCTCTGAATCTTAAACAGAGAGCTTCGTGAAGAAGATGAATCGATTACTGAGTATTGTTTTGGTGCTTCTAGCCATTGCTTGGGTTCCGACGTTTGAGTGTTCGAAGAAGCTATCAACAGCTGCAAGGAGGGAGGACGTTCCGTACATCAAATGCCAGGTCTGCGAGAAGCTTGCTGTGCAGTTGTATCACCAAGTTGAGAAGAAACGAGCTGAGATCGCTCCCAAGAAGATCTCCGAGTATCAAATTATCGAAATAGCTGAGAACGTATGTACTTTGAAGAAGGCAGAAGCTGATTGGATTTTGCAGATTGACATTGTTGAACAAGAGGATAGGCTTGAGCTAGTGGAGCAGAACACCGAAGGACAATGCAATTCAGAGTGCAAGACTATTGAGCGTGCATGTCAAGAGGTCATGGGATTTTCTGATACTGATGTTGCTGAATACTTGTATAGCTCCAAACCAAAGATTGAATCGTTGGTTAACTATCTGTGCAAGGACCTCACTCAATCATGCAGTACTAAGCCGCCTCCAGTTCCAAAGGACAGGACTCCAGGCGAGCCCTTCGTGGCCAAGTCAGCAAAGGAAGCCGAGATGGAAAAGATGTTGAGATCTATGGAGGGAATGCCAGGAGCACCCGGTATGAAAATGTATTCAAGAGATGATCTAATGAATATGAAGAATTTCGGAGGCGAAGATGACGATGAAGACGAGGAAGAAGATGATAAATTCCCTTCAAATTTGGGCAAAGTTTTGAGGGAGAAAGAGAGCAAGAAGAGTGATTGGAAAAACAGGATCACGAAGGGCGTTTCGAAGACAGGGGAAGCAATAAAAAAGCACGCTTACAGAGTCTCTAACAAAGTAAGGCAATGGTGGAGAGCGAAGTCCAGAGGCTTCAAAAGTTCAAAGCCCGCCGCCAAACAAGAACTGTAAAGTCTCTCAGTAACATTAAAGTTTAAATTCGTTGTATTTGCATCGCCCCATTAGGAAGTTAGCTAGTGAAACTGATAGCAAATACAGAAGAGTTCTTGTTCGAATCAATCAATGTTCTGAAATTTTGTAGTACTCTTCAGGAAGACTAAAGCCTTGGATTTGGAAATGTTGTTTTTTTTTTTACAACTTACATTATAAATTGCAAAAACTGTCAGGAATTGGGGGTACATTCTCCAATTGCTTGTGGCAGAAGAGGAACAATAAATTGTATTTAAAGCATCC

Coding sequence (CDS)

ATGAATCGATTACTGAGTATTGTTTTGGTGCTTCTAGCCATTGCTTGGGTTCCGACGTTTGAGTGTTCGAAGAAGCTATCAACAGCTGCAAGGAGGGAGGACGTTCCGTACATCAAATGCCAGGTCTGCGAGAAGCTTGCTGTGCAGTTGTATCACCAAGTTGAGAAGAAACGAGCTGAGATCGCTCCCAAGAAGATCTCCGAGTATCAAATTATCGAAATAGCTGAGAACGTATGTACTTTGAAGAAGGCAGAAGCTGATTGGATTTTGCAGATTGACATTGTTGAACAAGAGGATAGGCTTGAGCTAGTGGAGCAGAACACCGAAGGACAATGCAATTCAGAGTGCAAGACTATTGAGCGTGCATGTCAAGAGGTCATGGGATTTTCTGATACTGATGTTGCTGAATACTTGTATAGCTCCAAACCAAAGATTGAATCGTTGGTTAACTATCTGTGCAAGGACCTCACTCAATCATGCAGTACTAAGCCGCCTCCAGTTCCAAAGGACAGGACTCCAGGCGAGCCCTTCGTGGCCAAGTCAGCAAAGGAAGCCGAGATGGAAAAGATGTTGAGATCTATGGAGGGAATGCCAGGAGCACCCGGTATGAAAATGTATTCAAGAGATGATCTAATGAATATGAAGAATTTCGGAGGCGAAGATGACGATGAAGACGAGGAAGAAGATGATAAATTCCCTTCAAATTTGGGCAAAGTTTTGAGGGAGAAAGAGAGCAAGAAGAGTGATTGGAAAAACAGGATCACGAAGGGCGTTTCGAAGACAGGGGAAGCAATAAAAAAGCACGCTTACAGAGTCTCTAACAAAGTAAGGCAATGGTGGAGAGCGAAGTCCAGAGGCTTCAAAAGTTCAAAGCCCGCCGCCAAACAAGAACTGTAA

Protein sequence

MNRLLSIVLVLLAIAWVPTFECSKKLSTAARREDVPYIKCQVCEKLAVQLYHQVEKKRAEIAPKKISEYQIIEIAENVCTLKKAEADWILQIDIVEQEDRLELVEQNTEGQCNSECKTIERACQEVMGFSDTDVAEYLYSSKPKIESLVNYLCKDLTQSCSTKPPPVPKDRTPGEPFVAKSAKEAEMEKMLRSMEGMPGAPGMKMYSRDDLMNMKNFGGEDDDEDEEEDDKFPSNLGKVLREKESKKSDWKNRITKGVSKTGEAIKKHAYRVSNKVRQWWRAKSRGFKSSKPAAKQEL

Homology

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BLAST of CmaCh11G006790 vs. TAIR 10
Match: AT4G29520.1 (LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi - 10; Plants - 36; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). )

HSP 1 Score: 365.5 bits (937), Expect = 3.9e-101
Identity = 193/304 (63.49%), Postives = 238/304 (78.29%), Query Frame = 0


Query: 1   MNR-LLSIVLVLLA-IAWVPTFECSKKLSTAARREDVPYIKCQVCEKLAVQLYHQVEKKR 60
           MNR L+++ L LLA  A +P  + +KK S+  R+EDVPYIKCQVCEKL+ +L+  V++K+
Sbjct: 4   MNRVLVALTLALLASSALLPVSDAAKKPSSTPRKEDVPYIKCQVCEKLSSRLHQLVKEKQ 63

Query: 61  AEIAPKKISEYQIIEIAENVCTLKKAEADWILQIDIVEQEDRLELVEQNTEGQCNSECKT 120
            +I+PKKISEY+IIEIAENVC LKK EADW+L+IDIVE+ D L LVEQ  EG CNS+CKT
Sbjct: 64  QQISPKKISEYEIIEIAENVCNLKKEEADWMLKIDIVEKGDNLVLVEQQEEGMCNSKCKT 123

Query: 121 IERACQEVMGFSDTDVAEYLYSSKPKIESLVNYLCKDLTQSCSTKPPPVPKDRTPGEPFV 180
           IE ACQ+V+G+SDTDVAEY+Y SKP + SLVN+LCKDLT +CS KPPPVPKDR PGEPFV
Sbjct: 124 IENACQKVIGYSDTDVAEYIYKSKPDLVSLVNHLCKDLTDACSKKPPPVPKDRVPGEPFV 183

Query: 181 AKSAKEAEMEKMLRSMEGMPGAPGMKMYSRDDLMNMKNFGGE----DDDEDEEEDDKFPS 240
           AK +K+AEM+K+LRSM+GMPGAPGMK+YSR+D+    N G E    DDDEDEEEDDKFP 
Sbjct: 184 AKPSKDAEMDKILRSMQGMPGAPGMKVYSREDI-EKGNIGNEDDDGDDDEDEEEDDKFPK 243

Query: 241 NLGKVLREKESKKSDWKNRITKGVSKTGEAIKKHAYRVSNKVRQWWRAKSRGFKSSKPAA 299
           NLGKVL+EKESK  + K  ITK   K GEA+K+HA +VSN+VR+WW+           + 
Sbjct: 244 NLGKVLKEKESKTEELKKTITKEFKKKGEALKRHAQKVSNRVRRWWKGLGSSSSKKPKSG 303

The following BLAST results are available for this feature:

BLAST of CmaCh11G006790 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G006790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29520.1	3.9e-101	63.49	LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant struc...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..253
None	No IPR available	PANTHER	PTHR36058	NUCLEOPHOSMIN	coord: 2..295
None	No IPR available	PANTHER	PTHR36058:SF2	SUBFAMILY NOT NAMED	coord: 2..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006790.1	CmaCh11G006790.1	mRNA