CmaCh11G006590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Derlin
Location	Cma_Chr11: 3206834 .. 3210778 (-)
RNA-Seq Expression	CmaCh11G006590
Synteny	CmaCh11G006590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCTTGTTTGCTAAGGTTTGTTCGTCTTCAAGCGGTGAAATTCCTTAAAGAAGACTGAGAGATCTCTAGTTCCAAAGCTGCTTCGAGTTTGATTTCTGCTTCTACAATGTCTTCTCCGGCCGAGTAATACTGCCTCTCCATTTCTATTTCCTGTTTGAAACTCAATTTACGAATTCTGTATTTCGTTTCTCTGCTGTTCGATGCTGCAATTTGATTAGTTTTGATTTTTTTTTTCTTATGTTCAATGTCTGCTGTCATTGTGTAGTTTGATTTTAATCTGGAACCTGACCATTTTTTTTTCTCACGATTCAGATATTACAACTCTCTTCCGCCTATAAGTAAGGCGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAAGTTTACTGCGTTGCATTTCGGACTCATATTCAAGCGTTTTCAGGTATTGACTTGAATTTCCATAGGTGTCAGAATTTATCTGTTCAATTTTTGTTCTTTTTAAACATCTGCTGACTCTTGCTTTCATCAGTGTTTTTATTCTGTTTATCCAACATTCTTCTTGATCATTCTTTATCTTTTCAAGGGGCGTTGAATTTCATACTTATGAGTGGATTGGAATTCTTGGAATTCAAGAATTTCCTGGTTGGTTGACTTATCGGTTATATTCTCGATTGATAATTTTACGGAGGCGATAAATATCAGATAAAACTCAGAATTGGAAACAATGAATGAAGATGGGATTTATTTCGAAATGAATTCCATTATTCGGTTGAGATCAAATTAATAAATAAATTCTTAGTTAGTGCAAGGAATGTTTGACTGATCGAGAATATTTTATTAGAAAAGTTATTGATGGGACATTGGAATCATCTTTAACTTAACTTTTGAGGTAATGGTTCAAGTCTTTGATAGCAACTTTAGCAACTATGTAGTCAATTCTCCTCTTATTATTAGTACTAATTTTCATTAGTGTGGGATCCTTTGAACTCCAATAAAGGTTCTTGTTTTTGGTAGGAACTTTTGGCATTGGATAGTTTTGCCCTTTTCTCCATATCGTTTAATTGTGTCTTACTTTTCTAAAATAAGGTCATGGTCTTAAGACAAATGGACTTTCCATTTAGGATTTCAAGGATTTTACGATCTTTTTTAATGTCAAGTCTTGTAAGGTAAGGCAATCATCCCATCGGATTGATTGAGACACCCTCAATGTTAATCTATCCTTCCGTACTTGTTCTCCATAGTCTGGAGGTTATAAATCTCTTTAGTTTTAGAAGTCCCTATTCCAAACAAGAGGATTAGAATTAGATATAGAACAGTTCAAGTAAAATCAAAATGAAAGTTGACCGACAAATCTCTTCATTCTAAACCCGGTGAGGAGGAATAGAAACTTGGTAAAATTTATTAATTAATTTTAAGTTTTGTATGAAGCCTAATGGTAAATTCTTTATCAAACGTCAATTTATGAAGTGAACAGTAAAGATATCTAAAAGCAGTGAAGGGAGATACACAAGAACCAGAGTTTTTACATGAAATCCAATCCAGGAAAATTATGGTAGAAACAAGTTAACTTATGCTATGGATTTTAAATTCTGACGAGAAGAATCTTTGCTCTTAGGGAAATGACACAACTTGTGAGGTTCTAACCGAGGTGTGTCTATTGCTGGTTGAGAACTAATTCTAAAAAGAAAAGAATTAGCAATTATTGTTTCTTGAATCTCGTCAATATTTGCCTATAGAATCATTGTTTTTCATCTAGGAAGTTGGTCTTTCATATCAAAGGAAGTGGTTTCGAAAAAAATTGAGAGAACAGTATAAGTTTGGCTCCTCTCTCTCTCGCCTTTTTGTTTTTGTGGTGGAATTACTTGTGTTTATAAATTTAGGTCTAACAGCATCTGATTTTTCAGTGGAAATGACTGTGCCTCAAGTAAGTCATGAACTAGAACGTTCTTTACATTGAATATTCTTAAATGATGGATGCCTTTCCCTTTGCAGTAATTCTTTAATGTGAATTCCAATATATTCTTTCCATCACTATTATTAATATTTATCGAAGGTCACCTTTATTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATGTAAGTTTTTGTGTGTGATAACTTTTTTTTTTTTACATGAACTACTAGCAGTACTTTTTCATGAAGATGAAGGGTTTGTGTTAAAACTTTCATAAAGGTTTATGATGCACTAATAGTTTTTGTGTTTGTGCCCTCACAGAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTGTGTGAAGATCTTTATTAAGTTTTCCTTTAGATTGGCCCTTTTGTATTCTTTCACTTTTTGTTGGATGCTTAGTTTTTTCGACAAAAAAAGTCTAGATGCAGCGGTTCTTTTCAGTTTTATCTTTTTGTAAAAATAGTAGATTTTGCAGATGACACCTAATGGTTAAATTGTTTTATGTCATTTAGAAGTGATAATAATGTTACGAGGGAAAGATGTGTGAAAAGGCCACCGGACTTTTGGTTGTTTTTTTCGTTGTTCCAAATTATTTTGATGGTACTTAAATCATTTTCCAACGGCTTTACTCTTTTGTATTCCTGTTCCTCGGGGATTTTTTGTTTTCCTCATGAAATCCTCCCATCTAAGAGTTTTTACTTGTTGAACCTTTATTTTAGTTTGTGTATTTGAGCATATCAAATGTATTTATGCTGATTTGTGACAAGCTTTCTTGTTATGGATACTTCCTCTTGTGTAGGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTGGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCACAGATCAACATATATGGCCTTGTTACTCTTAAAGTACGACCAATAGCAATGATTTAGGTTTCAAATTGTACCTTTTTTTCACCACGGGATTGTGTTTCTCAGTTCCTAATATCTGCATTACAAATGTAATGCTTTTTGTGCAGGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTGCATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGGTGTATCCTTCCTCGTTTTGTTTTTTAACGACAAATGTTCCTTGCCTTGTTAGTTTGAGATTATCATGCATCTATACTTATCACATCCCTCTGTTCTGCCTATTTATCTACTATATATATATATACTCATCCGTTGGGTTTTTCTATTGCTTGCCTTGCTTTTATTCAGCGTATCTTTAACAATATCTACAGACAGAGGTTAGTATCAAGGTGGAGGATTGGAGCACCACCAATTCAACGTGCAGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCTTATCGGCTCAATGGCTAAACACTATTCTGTTTAAGAAAAAGATTGAGTTTTCTAGATTGTGCCTACTAACATCGAATGGTATACAAAAAGATGGGAGGAAAGAATTCGATTAGAAGTTCATCTCAAGCGAATGTTGCATTTATGTCATGATTAGCGATCAGCAGGTGCTCATGTCTTTCGTAGTAGCAATTTGGATTACCCGAATCATGATGGTCTTGACTCGTGAGTTTCGCTTTGAGAAATTGCTTCTGGACTCTGTAACCATATAAACTCCCAACTGTTCCCAATCCTTCTGACTAGAAATTGCAGATATTTTGATGTTATATTTTTCAAAATTTTAAATATGGTATTATGATCATCACACTGGACTTTAGTTTCAGGGAATTATTATTTTG

mRNA sequence

ATTTCTTGTTTGCTAAGGTTTGTTCGTCTTCAAGCGGTGAAATTCCTTAAAGAAGACTGAGAGATCTCTAGTTCCAAAGCTGCTTCGAGTTTGATTTCTGCTTCTACAATGTCTTCTCCGGCCGAATATTACAACTCTCTTCCGCCTATAAGTAAGGCGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAAGTTTACTGCGTTGCATTTCGGACTCATATTCAAGCGTTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTGGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCACAGATCAACATATATGGCCTTGTTACTCTTAAAGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTGCATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGGTACAGAGGTTAGTATCAAGGTGGAGGATTGGAGCACCACCAATTCAACGTGCAGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCTTATCGGCTCAATGGCTAAACACTATTCTGTTTAAGAAAAAGATTGAGTTTTCTAGATTGTGCCTACTAACATCGAATGGTATACAAAAAGATGGGAGGAAAGAATTCGATTAGAAGTTCATCTCAAGCGAATGTTGCATTTATGTCATGATTAGCGATCAGCAGGTGCTCATGTCTTTCGTAGTAGCAATTTGGATTACCCGAATCATGATGGTCTTGACTCGTGAGTTTCGCTTTGAGAAATTGCTTCTGGACTCTGTAACCATATAAACTCCCAACTGTTCCCAATCCTTCTGACTAGAAATTGCAGATATTTTGATGTTATATTTTTCAAAATTTTAAATATGGTATTATGATCATCACACTGGACTTTAGTTTCAGGGAATTATTATTTTG

Coding sequence (CDS)

ATGTCTTCTCCGGCCGAATATTACAACTCTCTTCCGCCTATAAGTAAGGCGTATGGAACCCTATGCCTTTTGGCGACTACAGCCTTCCAACTTGGCTTGTTAAATCCTAAGTTTACTGCGTTGCATTTCGGACTCATATTCAAGCGTTTTCAGGTATGGAGGCTATTCACAAACTTCTTCTTCCTTGGAAAATTCTCTATCAATTTTGGAATTCGTTTACTAATGATAGCAAGGTATGGTGTCCAACTTGAGAATGGACCATTTCAGAGGCGAACAGCAGACTTTCTATGGATGATGATATTTGGAGCCTTAACATTATTGGTACTTTCTGCTATACCAATCTTCTATTCATCATTCTTGGGGATATCACTTGTGTTTATGCTTCTCTACGTCTGGAGTAGAGAATTTCCTACTGCACAGATCAACATATATGGCCTTGTTACTCTTAAAGCATTTTATCTGCCATGGGCCATGCTAGCGCTGGATGTCATTTTTGGTTCACCTCTTGTACCTGATTTACTTGGAATCTTAGCAGGGCATTTGTATTACTTCTTGACCGTGTTGCATCCTCTGGCAGGCGGAAAGAACATATTGAAAACTCCATTTTGGGTACAGAGGTTAGTATCAAGGTGGAGGATTGGAGCACCACCAATTCAACGTGCAGCAGTACCTGATGATAGGGGTACAAGTGGAGCTTTCAGAGGGAGGTCTTATCGGCTCAATGGCTAA

Protein sequence

MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFFFLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVPDDRGTSGAFRGRSYRLNG

Homology

[Close]

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot
Match: Q8VZU9 (Derlin-1 OS=Arabidopsis thaliana OX=3702 GN=DER1 PE=2 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.7e-95
Identity = 182/264 (68.94%), Postives = 202/264 (76.52%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60
           MSSP E+YNSLPPI+KAYGTLC   T A QLGL+ P   AL   L+ K+FQ+WRL TN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFL 120
           FLG FSINFGIRLLMIARYGVQLE GPF+RRTADFLWMMIFG+ TLLVLS IP F++ FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180
           G+SLVFMLLY+WSREFP A I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGI+AGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQ-------RAAVPDDRGTSG-- 240
           LYYFLTVLHPLA GKN LKTP WV ++V+RWRIGAP           AA P   G  G  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

[Close]

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot
Match: Q06397 (Derlin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=DER1 PE=2 SV=2)

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-92
Identity = 171/244 (70.08%), Postives = 200/244 (81.97%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60
           MSSPAEYYNSLPPISKAYGTLC  AT   QL +LNP F AL++  +FK+FQ+WRLFT+FF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFL 120
           FLGKFSINFGIRLLMIARYGVQLE G F++RTADFLWMMIFGA++LL LSAIP     FL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFL 120

Query: 121 GISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180
           G+ +V MLLYVWSRE+P +QI++YGLV L++FYLPWAML LDVIFGS ++P LLGIL GH
Sbjct: 121 GVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGH 180

Query: 181 LYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGA---PPIQRAAVPDDRGTSGAFRGRS 240
            YYFL+VLHPLA GKN LKTP WV ++V+R+RIG     P++ AA       SGAFRGRS
Sbjct: 181 TYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAA---NTGSGAFRGRS 240

Query: 241 YRLN 242
           YRL+
Sbjct: 241 YRLS 241

[Close]

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot
Match: Q4G2J5 (Derlin-1.2 OS=Zea mays OX=4577 GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-87
Identity = 166/243 (68.31%), Postives = 192/243 (79.01%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60
           MSSPAEYY SLPPISKAYGTLC   T   +L +LNP F  L++  +FK+F+VWR+FT+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFL 120
           FLG FSINFGIRLLMIARYGV LE G F +RTADFLWMMIFGA++LLVLS IP   +  L
Sbjct: 61  FLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVL 120

Query: 121 GISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180
           G+ +V ML+YVWSRE P AQINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GH
Sbjct: 121 GLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIG--APPIQRAAVPDDRGTSGAFRGRSY 240
           LYY+  VLHPLA GKN LKTP WV ++V+R+RIG  A    RA    + GT GAFRGRSY
Sbjct: 181 LYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGT-GAFRGRSY 240

Query: 241 RLN 242
           RLN
Sbjct: 241 RLN 242

[Close]

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot
Match: Q4G2J6 (Derlin-1.1 OS=Zea mays OX=4577 GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 322.4 bits (825), Expect = 4.4e-87
Identity = 164/242 (67.77%), Postives = 188/242 (77.69%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60
           MSSPAEYY SLPPISKAYGTLC   T   QL +L+P F  L + L+FK+F++WRL T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFL 120
           FL  FS+ FGIRLLMIARYGV LE G F +RTADFLWMMIFGA++LLVLS IP+F S FL
Sbjct: 61  FLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFL 120

Query: 121 GISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180
           GI +V MLLYVWSRE P AQINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GH
Sbjct: 121 GIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQRAAVP-DDRGTSGAFRGRSYR 240
           LYYF  VLHPLA GK+ LKTP WV ++V+R+RIG         P +    SG FRGRSYR
Sbjct: 181 LYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGVFRGRSYR 240

Query: 241 LN 242
           LN
Sbjct: 241 LN 242

[Close]

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot
Match: Q54NN1 (Probable derlin-2 homolog OS=Dictyostelium discoideum OX=44689 GN=derl2 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.4e-39
Identity = 87/215 (40.47%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 1   MSSPAE-YYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNF 60
           M+ P E +Y +LP ++K Y T C++ + +  LGL+ P    L+F L+F +++ WRLFTNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 61  FFLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSS- 120
           FF  +  +NF   +  + R+   LE   F+ R+AD+L+M IFG+  LL++ A  +FY+  
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAF-LFYTKI 120

Query: 121 -----FLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDL 180
                FL  S+ FM++YVWSR  P   I+  GL T  A YLPW +L +  +F   L  DL
Sbjct: 121 VTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDL 180

Query: 181 LGILAGHLYYFLTVLHPLAGGKNILKTPFWVQRLV 209
           LG +AGH YYFL   +PL   + +LKTP +++ L+
Sbjct: 181 LGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214

[Close]

BLAST of CmaCh11G006590 vs. TAIR 10
Match: AT4G29330.1 (DERLIN-1 )

HSP 1 Score: 348.6 bits (893), Expect = 4.1e-96
Identity = 182/264 (68.94%), Postives = 202/264 (76.52%), Query Frame = 0


Query: 1   MSSPAEYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFF 60
           MSSP E+YNSLPPI+KAYGTLC   T A QLGL+ P   AL   L+ K+FQ+WRL TN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTLLVLSAIPIFYSSFL 120
           FLG FSINFGIRLLMIARYGVQLE GPF+RRTADFLWMMIFG+ TLLVLS IP F++ FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180
           G+SLVFMLLY+WSREFP A I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGI+AGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLAGGKNILKTPFWVQRLVSRWRIGAPPIQ-------RAAVPDDRGTSG-- 240
           LYYFLTVLHPLA GKN LKTP WV ++V+RWRIGAP           AA P   G  G  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

[Close]

BLAST of CmaCh11G006590 vs. TAIR 10
Match: AT4G04860.1 (DERLIN-2.2 )

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-34
Identity = 79/211 (37.44%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 6   EYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFFFLGKF 65
           E+Y  +P I+++Y T  ++ T    L +++P    L+  L+ K++Q WRL TNF +  K 
Sbjct: 7   EWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGALTL----LVLSAIPIFYSS--- 125
            ++F   +  +ARY   LE   F+ +TADFL+M++FGA  L    L+   IP   +S   
Sbjct: 67  DLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAK 126

Query: 126 --FLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 185
             FL  SL FM++YVWS++ P   ++  GL T  A YLPW +L   ++ G+    DLLG+
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGM 186

Query: 186 LAGHLYYFLTVLHPLAGGKNILKTPFWVQRL 208
           +AGH YYFL  ++P    +  LKTP +++ L
Sbjct: 187 IAGHAYYFLAEVYPRMTNRRPLKTPSFLKAL 217

[Close]

BLAST of CmaCh11G006590 vs. TAIR 10
Match: AT4G21810.1 (DERLIN-2.1 )

HSP 1 Score: 141.4 bits (355), Expect = 9.8e-34
Identity = 80/211 (37.91%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 6   EYYNSLPPISKAYGTLCLLATTAFQLGLLNPKFTALHFGLIFKRFQVWRLFTNFFFLGKF 65
           E+Y  +P I+++Y T  ++ T    L +++P    L+  L+ K++Q WRL TNF +  K 
Sbjct: 7   EWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGA--LTLLVLSAIPIFYSS----- 125
            ++F   +  +ARY   LE   F+ +TADFL+M++FGA  LT +VL    I Y S     
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYLSVSFSK 126

Query: 126 --FLGISLVFMLLYVWSREFPTAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 185
             FL  SL FM++YVWS++ P   ++  GL T  A YLPW +L   ++ G+    D LG+
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGM 186

Query: 186 LAGHLYYFLTVLHPLAGGKNILKTPFWVQRL 208
           +AGH YYFL  ++P    +  LKTP +++ L
Sbjct: 187 IAGHAYYFLAFVYPRMTDRRPLKTPSFLKAL 217

The following BLAST results are available for this feature:

BLAST of CmaCh11G006590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZU9	5.7e-95	68.94	Derlin-1 OS=Arabidopsis thaliana OX=3702 GN=DER1 PE=2 SV=1	[more]
Q06397	1.6e-92	70.08	Derlin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=DER1 PE=2 SV=2	[more]
Q4G2J5	1.2e-87	68.31	Derlin-1.2 OS=Zea mays OX=4577 GN=DER1.2 PE=2 SV=1	[more]
Q4G2J6	4.4e-87	67.77	Derlin-1.1 OS=Zea mays OX=4577 GN=DER1.1 PE=2 SV=2	[more]
Q54NN1	4.4e-39	40.47	Probable derlin-2 homolog OS=Dictyostelium discoideum OX=44689 GN=derl2 PE=3 SV=...	[more]

BLAST of CmaCh11G006590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29330.1	4.1e-96	68.94	DERLIN-1	[more]
AT4G04860.1	1.2e-34	37.44	DERLIN-2.2	[more]
AT4G21810.1	9.8e-34	37.91	DERLIN-2.1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007599	Derlin	PFAM	PF04511	DER1	coord: 11..201 e-value: 1.5E-47 score: 162.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..242
None	No IPR available	PANTHER	PTHR11009	DER1-LIKE PROTEIN, DERLIN	coord: 1..241
None	No IPR available	PANTHER	PTHR11009:SF32	DERLIN-1	coord: 1..241
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 9..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006590.1	CmaCh11G006590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:1990381	ubiquitin-specific protease binding