Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTTGTTTGGAGCCACATTACCGACTAACTAGTTGCTAAAAGAGAAAACCAAACAGCCAAACTTTGTGCGTACACGGTTTTCTTGGTCCTCACACACCCGACGTCTCAGATTTCATATTCAATTGCCACTAATTCTCCTATAAAAATACCAGGCGCTACCGCCATTGTGAAGGAACTGATACATACCAGGCAAGAACAACTTCATATGCAATAACAAGCTCAAGAATACCTTCGAAACA ATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAG GTATATCCAATTGCTATATCATTGAAGAAAAACTCTTATCTAATTTCGAACATTACTGGTTTTTGGTATTTACAATGATTTTTACGGGTAATAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTG GTAAGCTTTTAGATTATTTGATGATGAACTTCACACTTTTTCATGAGAGTTATGGTTGTTTAATGTCATATTGATTGCTCTTATGGTGCAGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA mRNA sequence
ATCTTTGTTTGGAGCCACATTACCGACTAACTAGTTGCTAAAAGAGAAAACCAAACAGCCAAACTTTGTGCGTACACGGTTTTCTTGGTCCTCACACACCCGACGTCTCAGATTTCATATTCAATTGCCACTAATTCTCCTATAAAAATACCAGGCGCTACCGCCATTGTGAAGGAACTGATACATACCAGGCAAGAACAACTTCATATGCAATAACAAGCTCAAGAATACCTTCGAAACAATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA Coding sequence (CDS)
ATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA Protein sequence
MILRSASTPLFNSWLHHSRDSYLEPEIVNQIPRARSIVLCCSPSCTSPIIDDSPRKITRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISETGDRDGGFVNVLVGGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEEDGLIEKPATSFFQGVHTPPPLAAAS
Homology
BLAST of CmaCh11G005400 vs. TAIR 10
Match:
AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 241.5 bits (615), Expect = 8.4e-64
Identity = 151/278 (54.32%), Postives = 189/278 (67.99%), Query Frame = 0
Query: 1 MILRSASTPLFNSWLHHS--RDSYLEP-EIVNQIPRARSIVLCCSPS--CTSPI----ID 60 M+LRSASTPL NS +H S RDS +E E V+QI R RSI L S S C SP+ D Sbjct: 1 MLLRSASTPLLNSLVHVSSPRDSPIETVESVHQIQRHRSITLSASSSSCCYSPMSVHSSD 60 Query: 61 DSPRKITRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISE 120 DS R++ R S++DLR ++ K P S+ LSG + +++ + IGF +T+S + IS Sbjct: 61 DSSRRMKRTASDSDLRHLTSTK-PPVSKFLSGGALMEDVDEGIGFGLIRTSSY--DGISW 120 Query: 121 TGDRDGGFVNVLVGGGVGG---SGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKM 180 D D + GGG GG GG+ GG SDGGD G+DNTD+HY+KM Sbjct: 121 ALDED----TEVAGGGGGGMFHGGGKGRSGGRSDGGDG----------GDDNTDVHYRKM 180 Query: 181 IEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDT 240 IEANPGN + LSNYA+FLKEVR D +KA+EYCGRAIL +P DGNVL+MYA+L+W+ KD+ Sbjct: 181 IEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDS 240 Query: 241 PRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEED 267 RAE+YFNQAV AAP DCYV ASYARFLWDAEE+EEE+ Sbjct: 241 SRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEE 261
BLAST of CmaCh11G005400 vs. TAIR 10
Match:
AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 188.3 bits (477), Expect = 8.4e-48
Identity = 131/301 (43.52%), Postives = 175/301 (58.14%), Query Frame = 0
Query: 1 MILRSASTPLFNSWL--HHSRDSYLEPEIVNQI-PRARSIVLCCSPSCTSPIIDDSPRKI 60 M+LRS S P+ NSWL H SR+S EPE +Q+ R+ S+ L S S I + ++ Sbjct: 1 MLLRSTSAPILNSWLPQHCSRESSPEPE--SQLWRRSTSLSLFSSKS----IDGHTGEQL 60 Query: 61 TRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRES-------IS 120 +ALS D +++ + K K + + + R + +R +L R S S Sbjct: 61 HQALS--DNKEIIILKSKSNEHSYKTPTSSRQRRSSLDETRYTKKTLDRSSPFLVERLFS 120 Query: 121 ETGDRDGGFVN----VLV---GGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDL 180 +G D N LV GGG+GGSGG I GGG GG G+ D D TD Sbjct: 121 SSGQGDKASSNDRLETLVSGGGGGMGGSGGNICNGGGGVGGS----GV-DGGRSEDATDT 180 Query: 181 HYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWE 240 +Y++MI++NPGNS+L NYA+FLKEV+GD+ KA+EYC RAIL N DGNVLS+YADLI Sbjct: 181 YYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILH 240 Query: 241 TQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEEDGLIEKPATSFFQGVHTP 285 +D RA SY+ QAV+ +P DCYV ASYARFLWD +EDEE++ L E+ + H P Sbjct: 241 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENLSDETGHVP 288
BLAST of CmaCh11G005400 vs. TAIR 10
Match:
AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 147.9 bits (372), Expect = 1.3e-35
Identity = 109/267 (40.82%), Postives = 153/267 (57.30%), Query Frame = 0
Query: 1 MILRSASTPLFNSWLHHSRDSYLEPEIVNQIPRARSIVLCCSPSCTSPIIDDSPRKITRA 60 MI+RSAS+ L + + +P + + AR++ S +P + + ITRA Sbjct: 1 MIMRSASS------LDLNLRAAQKPSVPRVVTTARTV------SAATPRV---AKPITRA 60 Query: 61 LSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISETGDRDGGFV 120 S+ +L + + ++T+S + E +TASLR + E G Sbjct: 61 SSDGNL--YKIQSPESITKTISVYHE-------------ETASLR---VLEGSRLPQGGS 120 Query: 121 NVLVGGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLS 180 N GG GG GG +GGGG GG + D +Y++MI+ PG+++LLS Sbjct: 121 N----GGFGGRGGDGAGGGGGGGG--------------GSVDGYYEEMIQRYPGDTLLLS 180 Query: 181 NYARFLKEVRGDLVKAQEYCGRAILSNPG-DGNVLSMYADLIWETQKDTPRAESYFNQAV 240 NYARFLKEV+GD KA+EYC RA+LS G DG +LSMY DLIW+ D RA+SY++QAV Sbjct: 181 NYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAV 216 Query: 241 QAAPNDCYVLASYARFLWDAEEDEEED 267 Q++P+DC VLASYARFLWDAEE+ EE+ Sbjct: 241 QSSPDDCNVLASYARFLWDAEEEVEEE 216
BLAST of CmaCh11G005400 vs. TAIR 10
Match:
AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 141.7 bits (356), Expect = 9.0e-34
Identity = 90/206 (43.69%), Postives = 114/206 (55.34%), Query Frame = 0
Query: 83 GFSEVDEERDVIGFSR------SKTASLRRESISETGDRDGGFVN--------------- 142 G V E DVI R SK + R E G+ + F + Sbjct: 60 GMRRVLSESDVIRSERMLKRVGSKPSPARIPEDDEAGEEEIRFADGWGSMISGGLPVEEK 119 Query: 143 VLVGGGVGGSGGRISG-GGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLS 202 GGGVGG G G G G GG + IGD +Y++M+ +NP NS+LL Sbjct: 120 CFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGD----------YYREMLRSNPNNSLLLM 179 Query: 203 NYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDTPRAESYFNQAVQ 262 NY +FL EV D A+EY GRAIL NPGDG LSMY LIWET++D RA+ YF+QAV Sbjct: 180 NYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVN 239 Query: 263 AAPNDCYVLASYARFLWDAEEDEEED 267 A+PNDC VL SYARF+W+AE+D+++D Sbjct: 240 ASPNDCMVLGSYARFMWEAEDDDDDD 255
BLAST of CmaCh11G005400 vs. TAIR 10
Match:
AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 93.2 bits (230), Expect = 3.7e-19
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 0
Query: 150 GIGDSNHGNDNTDLHYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPG 209 G D N G+ +Y+ M+E P + +LL NYA+FL E +GDL A+EY + + P Sbjct: 115 GYDDKNCGD-----YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPS 174 Query: 210 DGNVLSMYADLIWETQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWD--AEEDEEED 267 DG L+ Y L+ + +D +A SYF +AVQA+P+D VLA+YA FLW+ A++D+E+D Sbjct: 175 DGVALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDEDD 227
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
AT5G20190.1 8.4e-64 54.32 Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G80130.1 8.4e-48 43.52 Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G32340.1 1.3e-35 40.82 Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G17940.1 9.0e-34 43.69 Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G04530.1 3.7e-19 42.86 Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
A T C T T T G T T T G G A G C C A C A T T A C C G A C T A A C T A G T T G C T A A A A G A G A A A A C C A A A C A G C C A A A C T T T G T G C G T A C A C G G T T T T C T T G G T C C T C A C A C A C C C G A C G T C T C A G A T T T C A T A T T C A A T T G C C A C T A A T T C T C C T A T A A A A A T A C C A G G C G C T A C C G C C A T T G T G A A G G A A C T G A T A C A T A C C A G G C A A G A A C A A C T T C A T A T G C A A T A A C A A G C T C A A G A A T A C C T T C G A A A C A A T G A T T C T G A G A A G C G C T T C G A C T C C C C T C T T C A A T T C A T G G T T A C A C C A T T C A A G A G A T T C A T A C C T G G A G C C G G A G A T C G T G A A C C A A A T C C C T A G G G C G C G T T C C A T T G T G C T C T G T T G C T C A C C C A G T T G C A C A T C T C C G A T A A T C G A T G A C T C A C C C A G G A A G A T T A C T C G G G C G T T G T C C G A G A C G G A T C T T C G A G A C A T G T C C A T G A A T A A G A T G A A A C C C T T T A G C A G A A C T C T G A G T G G G T T T T C T G A G G T T G A C G A A G A G A G G G A T G T A A T C G G G T T T A G C C G C T C C A A A A C G G C G T C G T T G A G G C G T G A A T C G A T T T C T G A A A C T G G G G A T A G G G A T G G T G G G T T T G T T A A T G T T C T G G T T G G T G G T G G A G T T G G T G G T A G T G G T G G A A G G A T C A G T G G C G G C G G A G G A T C C G A C G G T G G C G A C G A T G G G A G T T T C G G G A T T G G A G A T T C G A A T C A T G G A A A T G A C A A T A C G G A T C T G C A C T A T C A G A A A A T G A T C G A G G C A A A T C C T G G G A A T T C A A T G C T T T T G A G C A A T T A T G C A C G G T T C T T G A A A G A G G T A C G T G G G G A T C T T G T A A A A G C T C A A G A A T A T T G T G G A A G G G C G A T T T T G A G C A A T C C A G G C G A T G G T A A T G T C T T G T C T A T G T A C G C T G A T C T G A T A T G G G A A A C T C A G A A G G A C A C T C C A A G A G C C G A G A G T T A C T T C A A T C A A G C C G T T C A A G C T G C C C C T A A T G A C T G C T A T G T T C T A G C A T C A T A T G C A C G G T T T C T T T G G G A T G C T G A A G A A G A C G A A G A A G A A G A T G G C T T A A T C G A A A A G C C A G C G A C A A G C T T C T T T C A A G G A G T T C A T A C C C C A C C T C C T C T T G C T G C C G C A T C T T A A 100 200 300 400 500 600 700 800 900 1000 1100 Expect = 9.4E-14 / Score = 53.2 Score = Expect = 1.2E-4 / Score = 22.2 Score = Score = Score = Sequence G3DSA:1.25.40.10 SSF48452 PF13431 mobidb-lite PTHR26312 PTHR26312:SF73
IPR Term IPR Description Source Source Term Source Description Alignment
IPR011990 Tetratricopeptide-like helical domain superfamily GENE3D 1.25.40.10 Tetratricopeptide repeat domain coord: 154..278 e-value: 9.4E-14 score: 53.2
IPR011990 Tetratricopeptide-like helical domain superfamily SUPERFAMILY 48452 TPR-like coord: 164..263
None No IPR available PFAM PF13431 TPR_17 coord: 165..198 e-value: 1.2E-4 score: 22.2
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 131..157
None No IPR available PANTHER PTHR26312 TETRATRICOPEPTIDE REPEAT PROTEIN 5 coord: 1..279
None No IPR available PANTHER PTHR26312:SF73 TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN coord: 1..279
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515
protein binding