CmaCh11G004550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G004550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Nucleoid-associated protein
Location	Cma_Chr11: 2219211 .. 2222980 (+)
RNA-Seq Expression	CmaCh11G004550
Synteny	CmaCh11G004550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGGCTTTTGGGCGTGGTTCTCCGAGGCGAAAATCTACTTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACATTCACAGCTTTGGGCAATGGCATCGACAATTTCAATCAGTGCTCAAGTGCCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTTAGTACACCATTTGAACCTTTTCATTTTCTTTTGGTTGCTTAGACAGTAGGAAATTGAGGACTATATTTGAGATTGATTGTTATGTCTCTGAATAGAAGTGGTTGTTTGGAACTTGGATCTGTATTGTATGTTACGTAGCTATCTCACGACCACTCAATCAAACGGAGGGATCTAAGTTGGTGCGGTTGGTTGGTATGGCGTAGTTCATTGGGAAGATCTACCGTTCGCATGAAGTTTAGACCTAAAATAAGCTATCTGATGGTGTCCTCAGTGCATATTATTGAATGGGTTTGGCTCATTTCTTATTAGGAATTATTGTTTGCTTTGTAAAATCAAAATAAATGTGTGATTGATGAATGGGAGATTCGATTCACATGAACTTGATGGCAGATGCGTTATGTTTACAGTTTTGTATAAAGATTATGAAAGAAAAAGGCTGTGGTCTGGAAAATTAACGTAAAAACTGTTTAATAGGTTTGGATAAGCATCAAAACTCTTTAGCACCAGGTTCAACTGCAAGATTATCCACCTTAAAAACTGTTCATAGAAAACGAATTGCATGAACCGGTGAGTTGTAGCCTATAGACTGAAGCCGGTTGCATATCTGATAATGTGAATGTCAGAATTGAATAAATCCCGTCTACTTCATTATAACTCTTAACAAACTAGATATTAACGTTGTATGACTTAGAATTTAGTGGTTTGATTTTTATAATTTCGAATATAATACTTTGGGCAATAGAAATTTGTGTGCAGCTGCAAAGTCCTCGTTTATTTCCAAATTTTCATTCTGAAATTGTAGATTAAGTCCACTTTTTGAGACATTTGATTGTACACATTACCTATTAATATATAATTTATCCTTTTCTGGCTGCCTCTTACAGGTAACCTTAATTCAATGTCAAAAATAATTGGCACGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGTAGAATTTTGTTTTGCAATATGATTAGACAGTATAAGTTTTGATACCATGCACAATAAAATTGTCATTTCAGTAATTTAGAGACCAAATATAAATGTCTCTCAAAGTTGAGGGACTGTAAGTGACTTTTCCTTGATAGCCAAGTGAGACTATCGTTTCTTTCATGCCAACTTTTTGTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGTATGACTAAGCAAGCTAAATAGATGTATTGTCACTTGAAGATGTTTCTCTGTTTTATGAAGTTTGAACTTTTTTTCTTTCTATGTTTCTGTTCTACAGGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCAGCCTTTCTCTTTTGCATCAAGTTCATTTTCACTTTGCCCATAACTATGGGATTATAATGGTTGTTTGTGAAGTGAACGTGTGTTAGAATTTTGCTTAAGATTGTAAAATACTTTTCACCTCTTGATTTAGGTGGCTGGTAATTAGTAAATAAGTACAGATACCTGATACTTGTTTTTATTAATATTGCGTTTGTTGTAGGTGTTACTTAGAGGGAGAGACAGGTCTTGAGTTTGTGATTACCAATTTTTCTTTCTTGTTTTGTGATTACCAATATTCAACCTGGTCGATGTGGACTTAAAATCTCTTGGGGCCATCTCCCTCAGATATTAATTGTTATAAAATATGTGTAGGATCAATTGATAGTTCCAGCGTTGATCCCCATGGACATAGAAAGTGAAGTAATTTTTTTTTTTCTTGATAAGAAAAGTTTAGGGAATTTCAAAAGAGAGAATAATGATTTATGAAAATAATCAAAGAAGTATTGAGCTCGGGACAAAAGGTTATGGGTTTGACAATTGGGTTCATGCGAGGCTGGACATGGCCTTTTCATTTAATGAGAATTATGATGCTAAAGAATGGGATCATATCATGTTTCCATGTCACATCATATCTGCTTTCATATTTTTTGTCAACTAATTTAGGTGACATTATCCGGAAATCAGCAACCTCTTCGTACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACAATGATGTGATGCACTCTAACATTTGAAATTGCATTGCTCGCAATAGAATTCTTATATTGAACTTATATTTACATCCTCAAGTCACACCTTAATGCTGCACTACCTGTCCTGTCCTCAATCTAAGCTTGGAGATATCTTCTTCAATGTTTGTGCCTAGTGGAATCATGACTAACACATCATGAATTTGAAAATTGGCTGGCATATAGGACTAGGGTCCGCCTGCTTTGGAACATGTCTCAAAAATAAATTGACAACCATCATTATATTTAAGAATATAGTTGGCAGTAACATTGTAAAAATTGTGTGCTAGGATTTTTCTTTTGTTGTTGTAGAGTAAGAAACCACACTTTCACAGAGAAATTAAAGAATATTTGGAGTATATCCTCTTCAATGTTTGTCCTGTGGAATCATGACTAACACCTCATGAGTTTGAAACTTGGCTGGCCTATAGGACTAGGGTCCGCTTGCTTTGAAACATGGCTAAAAAATAAGTTGACAACCATAATTATATTTAAGAATATTGTTGACAGTAACATTGTAAAAATTGTGCTAGGATTTTTTTTTTTTTTTTTTTTTTTGTTGGGTAAGAAACCATGCATTCATTGAGAGAAATTAAAGAATATTTATGGACGTATAAATAAACAGGCCCCAACGAAAAGAACTTGACCTTAACCAAATAAATAACTCCAAAAGTTTTATTATTCCTTTCTATTCAAATATCCCACAAACTTGCAAAGAAACTAGAATGCCACAAAAAAATTTCCCTTCTTTCTAAAAGGAGAAATTAGAAGTACCTCCTCCAACCAAGCCTATCCCGAGCCAATTAACACCACTTAAGATTTGTTCCAATAGTAATTAAGATTTCTGATTGTTGTGGTTAATTATGGATATTCCAATTATTTAGAGCTTTACTTTCTTATGCAGAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGTAAGACTTGTTCCTTTGTAATTTAGTTTCCAAGTTTTGTATCTGTAGAACTGACTGTTGGTCCTCTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTGAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATTTGACCTTGGCAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTATAAAAAAAGAAAAACAGCTATGATATTTGTTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAATGAGATTTCAAATTGGAATCTACTTTAGAAGCGATATTGACTATCGTTTCGGTTTGTTGAAAG

mRNA sequence

TTTGGGGCTTTTGGGCGTGGTTCTCCGAGGCGAAAATCTACTTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACATTCACAGCTTTGGGCAATGGCATCGACAATTTCAATCAGTGCTCAAGTGCCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAAATAATTGGCACGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGTACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTGAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATTTGACCTTGGCAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTATAAAAAAAGAAAAACAGCTATGATATTTGTTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAATGAGATTTCAAATTGGAATCTACTTTAGAAGCGATATTGACTATCGTTTCGGTTTGTTGAAAG

Coding sequence (CDS)

ATGGCATCGACAATTTCAATCAGTGCTCAAGTGCCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAAATAATTGGCACGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGTACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTGA

Protein sequence

MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK

Homology

[Close]

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot
Match: Q9M098 (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 113/142 (79.58%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 48  NNRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 107
           NNRSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 108 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAM 167
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AM
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAM 162

Query: 168 KQRMSDLAQSLGMPQGLSEGLK 189
           K+RMSDLAQSLGMP GL +GLK
Sbjct: 163 KERMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot
Match: O82230 (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 109/146 (74.66%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKS 162
           QKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLSEGLK 189
           V AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot
Match: Q5N376 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 79  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot
Match: Q8GMT0 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 79  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot
Match: Q8YM73 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-13
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 79  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M++L E  + AQQ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  
Sbjct: 13  GKMKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPD 72

Query: 139 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 73  ALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]

BLAST of CmaCh11G004550 vs. TAIR 10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 204.5 bits (519), Expect = 7.4e-53
Identity = 113/142 (79.58%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 48  NNRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 107
           NNRSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 108 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAM 167
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AM
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAM 162

Query: 168 KQRMSDLAQSLGMPQGLSEGLK 189
           K+RMSDLAQSLGMP GL +GLK
Sbjct: 163 KERMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of CmaCh11G004550 vs. TAIR 10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 204.1 bits (518), Expect = 9.6e-53
Identity = 109/146 (74.66%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKS 162
           QKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLSEGLK 189
           V AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of CmaCh11G004550 vs. TAIR 10
Match: AT2G24020.2 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 204.1 bits (518), Expect = 9.6e-53
Identity = 109/146 (74.66%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 43  WKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRV
Sbjct: 36  YKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 95

Query: 103 QKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKS 162
           QKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 96  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 155

Query: 163 VQAMKQRMSDLAQSLGMPQGLSEGLK 189
           V AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 156 VVAMKERMSDLAQSLGMPPGLSEGMK 180

The following BLAST results are available for this feature:

BLAST of CmaCh11G004550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M098	1.0e-51	79.58	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
O82230	1.4e-51	74.66	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q5N376	1.7e-14	47.06	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Q8GMT0	1.7e-14	47.06	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
Q8YM73	4.2e-13	46.08	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of CmaCh11G004550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30620.1	7.4e-53	79.58	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.1	9.6e-53	74.66	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.2	9.6e-53	74.66	Uncharacterised BCR, YbaB family COG0718	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 92..176 e-value: 1.5E-16 score: 60.5
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 4..188
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	3.30.1310.10		coord: 77..185 e-value: 1.3E-30 score: 107.6
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	82607	YbaB-like	coord: 93..181
None	No IPR available	PANTHER	PTHR33449:SF6	SUBFAMILY NOT NAMED	coord: 4..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G004550.1	CmaCh11G004550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding