CmaCh11G003610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	tRNA-specific adenosine deaminase 2-like
Location	Cma_Chr11: 1797585 .. 1803110 (+)
RNA-Seq Expression	CmaCh11G003610
Synteny	CmaCh11G003610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTTTCTCCTTCTCCCGCGGCTTCAGTTCGCGCCATTCTGTACGAAAATCTGCACAATTGCCCTAATCTCTCTCACTCTTCGATAAGCGGGTATCGGCGACAAGTTCTTTATCCCTCTCTCTCTCTGCATTTGTTAACTGGTAATCATCTGTTAATCTTCTGTTAATTTCCTTTTATATGACCACAACCTATTGCACCGCGTCCTGGATTAAGATGGATTCTTCGAGGGAGGATTGCTCCTCCGACACTCTTCGGTTTATGGAACTTGCAATTCAGCAGGTGAATATCCCTCCTGTACGAAGATGGTGAATTTTAGCATCATAATTGTCAAAGTTACTTACCCGCACTCAAAAGATATGCAGTTCAATTAATTTCCAGGAAGTTATGCAGGGCATGAGACGTATGCAAGAAGATCTTTATTGCTTTTTCAAATTTCCACGACCATTAGTTTACATGTTATGCTTTTGTTTGTCAAGCGTCTTCATTTTCTGCTCTGATTTTATTAGAAATACTTGTGAATAGCTCCAGGCTCATTGGAGTTTGCATTTCTAATGGATGTCTGACCGTAGTTAATCGAAACACTTCACGTAGTATTTTGATCCCTGTGTCGACATTTTCTGTGAAGAAATTATTTTATTGATGCGTCTCTCCCATGCTGACGTCCTTAAATTATTGCTTTGTAAATCATCAATTTTTGCGTAGTATGGGATCATAGGAATGAAAATACAATACGTGGGGGTTGAGCAAAATGGAGGCTGAAAAAAAGAGAGTTCTGCAGGGCCATCTGCCTTTGCACGGGGTTGCTTGTTTTGTTTCAACTGAAAGCTTCTTCTAATCCATTAGATTCTCATCACATTTAAATGTTTGTCTCAATGGTGTCAGATTTATTTATCTCTATAGTAGCTTAATATTTTTCCATGTGGTTGCAGGCCAAGCTTGCACTGAACAGCCTAGAAGTGCCTGTAGGGTAAGCTATTGTCTATTTTTACCATTCTTGCCGGTAAGATCTGTTGTGTTGCAAAATGAGTTCACTGTTTTGGTGCATTTTCAAAAGGATGTATTAACATTCCACCTCAATATTTGTTGTTTGTTCCTTTTGAGTAGTTGTGCCCAAAACTCATTATAGTTATTTATGAAAGCATTGCTTATGAGGTCATCATATTATTGTTATTGTTCAGCTGTGTGATTGTTGAAGATGGGATGGTTGTTGCCACTGGAAGAAATCGCACTACTGAGACTCGAAATGTAATCCAACATGGTTCTTGTTCCCCTCTCTTTCTGCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAATCCAATGTTATTTAGTGATCAATTGCACTTCATGGTAGCTGCTTTTTTTTGTCCTATTCCTTTATCATATTATTCTTGTTCAGCTGTTACTTAGCTAGTAAAGCGTTTGATGATTCTATCTCAATGAACCTCCAAGGATAGGATTTGTGTATAAAGGAACAGGGTTAAGACACCATCCATGTCAATGTATTAACAAAGTCACTCTGTACATCTATAGAAGGTTGTGAGGGAATGCAAGAGCTAGTTGGAGCCTGAGACAAGGAGAGCAATCTCTCTGCTTCTCTTCATCTTGATAATAGGTATGATGAGTAGAATAATGAACAAAGTTAGAGAGGATGGTTTGTTTGGGTGCTTCAAGGTTTGTAGCAAAGAATGTCATTTAACTCGTTCTTTTAGCAGATGACTTTCTACAAATTAGCAGGATGTTTCATATGCTTCTGGTCTAATAATCAATCTTTTAAAAGTTTTGTAGTAGACATTAATATGGCATATAGAAAGTTGGCAAAGATTGCATCTACCTTCTATTGCAGTATTTTTCATGGTCGTTTAGCTACCTTGGCATGTCTTTGGCAGGCAAAAAAATCCTCAAAATTTTTGGGACTACATGTTTGATTAATGCTCTTAACTTAAAATCGGATCCAACTAACATACTGAGCTTGATCCAATGCGTATTTCTATTTGTTTAAAGTCTTGAAAAGAACTAGTTGAAAGGTTGAAAAAAGAGATCCTAGATTCCATATGATAGAGTCTAGAGGAAGTAAGCGGGAACCACTTGGTTCATTGAAACGAAATGTCTCTTCCAATGAACTTGGGGGTCCTTATGATGGGTAATATCAAGAGAAGAAATTATTCTATATGAGTTAATTTGATTTGGAGATTTCTTTCCAGGATTACTAATGGATGGACGGAGGAGATAGCAATTATGTATGGAGTGATCAATCAGGTTGGGATGTCTCAAAGAATTGCTGGAACTTGTCTTTTTTTAGGGGTTATTCATGGACGGGTGTGGATGAATGTAAATATATGTTGAATTTTCTCTAAAGATCAGCATGAGTAATCAAGAATTTGGTTTGCCAATAGCATTATCCCTTTTTAAGCAAGAATTGAAAGACTCCGATTGATCAAAATGGCTCTATGGGTGAGAAGAAAGTTTCTTTAAGATGTGGAAATCCAAAATGCCTAAGCTAATCGTCCCTTTGAAGATATTTGATAAAATTGGAACAATATTTGGAAAATGACTAAGGTAATATGTTCTTTGTTGTGATTAGTTTACCTTTGCAAGATTAACACCTATGACAATAGCTTTTTCATTCTTGTGCAAAGGATAGGCATTCTGTCTTTAGCTGAAAGGTGAGGACATGAGTGAACAAGGACAGGCCCGTTGAACAAAGAGAAATCCGTACTTTTCCCTTGCCCCTCAAAAAAAGTATCCTTTGTAGAAGAGACCTAGGTCGACACATTTCCATAAAAGTATGCCCTCTATATACACTTTGCGTTCTTTCATTTTTTTTCTCTGGATTTCCATCCAAAATAAAATAAAAATTCTTTAAAAGTAAAAGGTATAGTAGATCATTCTCCTCCCCTGCTCAAATTATTTCTGGGAAGGAAAAAGGTCCTTTTGTTAAAGAGCAAGATCTGATCTATACCCATCAAGATACAGTGATGAGAGTCAAAATTTTGTAGAAGGAACTGTTGAGGTAAAGGATGTTTGACCAAGGATCCCGGGGACAATTTTCCCAAATACGTACCTTTGCAAAAGAAATGCAGAATCCATCAGCCATCTATTTATTTGGCTTCCCATTTGCATACAAAGGCTGGATTTTCCTACATAGATGTTTTGACTTCGGTTGGTGCCTCCAACATGGAAGATGGTCTAACAAAATTTATGTCCGGATAGAGAGAGAAACTCCATATTTTTCTTAGTTAAGTCATCTTCTTTTCATAACTTCTCTGATAATGTATAGTGGGAGGCCTCCGATACCCGCCTACAGAAATCTTTTTGTGCTACCCTGGCGTCAACTTAAATTGGGTCCTTTTGTTTTTGCCCTCCTCACTAGCTTCAGGTATCCCTATCCTCAAGGCCTTTATGCTGCTCTCCTTTTTCCCATTAATTTGATGGTTTTGTTTTTCATTAAAAAAATAGTAAATAAGTTTCTTGGGTACAATTTTGAAAGAACTTGTAGCGAAGATAGTTTCGTTGTTTTCAACTTAGAGGATTTTGGAGTCTCAAATTCAGGGCCATGTTTCAAATATCCAAGTTGCTCTGACGGACTTTTGCCAAGGTGGTTCCTTGACAAAGCTTAGAGGCTGATTGCAACAGTTCTCAAGTTTAAAGGATTTTGGATTCTCAAAAGAGAACTATGCTGTTATAACTCAACCAAATGAATCGTTTTTAGGCCTCAAAATTTGATTGCTTACCTAAGATATTAAGTTCCTACAAGTGTTCTATGCTAATTTTTCAAGCAGTTATAGTGTGGGATCAGTCAAGGTACAACTAAGCTAGCAAGGAAGGGTACACGGGAATATCCATTCCCAGCTTTCCTTAAGACTGTAGTGACAAGTTCTTTTGCCTTGTTTTGCTTATTATGTTTATAAGCTTTCTTTTCTACATTATTTTTTATATTCTCATAGGCTACCAGACACGCAGAGATGGAAGCTATTGACATTCTGATTGAGGCATGGCAGAGGAATGGACTTTCAACCTCAGAAGTTGCTGAAAAATGCTCGAAGTGCAAACTTTATGTTACCTGTGAACCTTGCATTATGTGTGTTTCTGCCCTATCAATACTTGGTATGTTTTCTTTTTCTTGTTTCTCCATGCAGAGGCAACTGTTTGTCCAAAGAGTTATAGGTCATAGTTTACCTTTCATTTAACGACTGAATATGGTTGATTCATTGCTATGCGATTTCCTGTTTCAGGTATAAATGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTAGGTAGCCGTGAGGCACATACAAGGTTTATTTCTTTATCTACCATTATCAGATTTTAGTTTTATGAGATTAACTCTTTGGTTTCTTGAACGAATTGCTGCAGTTAGTTGTTAACTTTTCCAAAATAACTTATATTTTTATGTAGTTTTAAGTCTTTTACTTACTTTCAAGCTATCAATTCATATGCTTCCTTCCAACTGGGTCGCTTCTTCAAGAAAAAGTGGGATAAAAATACACCTGCTATGGGAGAATTGTGTTTGTTTTTCTCTTCGTGCTTTTGAAAAAAAGTGTGCTCTCTTTCCAAGACTTATGCTGGTTTCTCATTGCAAGATATTTGTTTTAATTGATATGCTTTTATCACTCCTTTATAATCATTGGTTTCTCTTTTCTTATGTTTTTTATTTTCACTCTTTTATCGAGTTTGTATCTTTTAAGCATTAATCTCTTGTTTTTTTAAAAAAAGTAGAGGCAAGGAAGAATATTGCATTAAAAAATTCTCTGATTCTTTCCAACCATAATTCTGAAAATAGAGATTTAACCGAATTTACCCATAGAGTGTTTGGCCTTGAGCCAAAAGAGGACCACTGAGAAGCTGAAGAATATTGTCCTTTAAAACATTTGAGAAAACCCAGTGCATATTGAAAAGAACAATATACTTGAACCATCAATTCAAATAATAAGTGCAACCAAAAAAGATATGAAAAAGATACCCCCCATCTGCATGTCAAAAAGGACAAACTGAAGGCATGAGCTTGAAAAGAGCAACTTTCATTGAAGCATTTCCTAGGCATTTAAATTCTCATTCAAGATATCAAATCAAACTATTGGTAATGGGCAAGGAAGGGGATTCATTTCGGATAGTGATTCTTTAATTTGTTGTGATAGTGGTAATTGGCAAGGAAGGGGATTTAAATGCACAGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGATGTTTTTATGAACAGGGAAATCCTAATGGTACGTGAAATTATTTTGATCATCTGATTTGCACGATTTGCTCGTGTATTGAACATTTTATCTTCCAAACAGACCAGCTTATTTTGTTGGTATAACCTATTTGTCAGATATTTTTTTTATCTTTTGGATTGATAGACTTTGAAAAATGTATATGGTCTGATTGATAGTGGTGGTGTTCTGTTGCAGCTCCAAATCCTCACAGGCCCCTTGTTCACAATCGGGCAGGTCAATGA

mRNA sequence

ACCCTTTCTCCTTCTCCCGCGGCTTCAGTTCGCGCCATTCTGTACGAAAATCTGCACAATTGCCCTAATCTCTCTCACTCTTCGATAAGCGGGTATCGGCGACAAGTTCTTTATCCCTCTCTCTCTCTGCATTTGTTAACTGGTAATCATCTGTTAATCTTCTGTTAATTTCCTTTTATATGACCACAACCTATTGCACCGCGTCCTGGATTAAGATGGATTCTTCGAGGGAGGATTGCTCCTCCGACACTCTTCGGTTTATGGAACTTGCAATTCAGCAGGCCAAGCTTGCACTGAACAGCCTAGAAGTGCCTGTAGGCTGTGTGATTGTTGAAGATGGGATGGTTGTTGCCACTGGAAGAAATCGCACTACTGAGACTCGAAATGCTACCAGACACGCAGAGATGGAAGCTATTGACATTCTGATTGAGGCATGGCAGAGGAATGGACTTTCAACCTCAGAAGTTGCTGAAAAATGCTCGAAGTGCAAACTTTATGTTACCTGTGAACCTTGCATTATGTGTGTTTCTGCCCTATCAATACTTGGTATAAATGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTAGGTAGCCGTGAGGCACATACAAGTGGTAATTGGCAAGGAAGGGGATTTAAATGCACAGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGATGTTTTTATGAACAGGGAAATCCTAATGCTCCAAATCCTCACAGGCCCCTTGTTCACAATCGGGCAGGTCAATGA

Coding sequence (CDS)

ATGACCACAACCTATTGCACCGCGTCCTGGATTAAGATGGATTCTTCGAGGGAGGATTGCTCCTCCGACACTCTTCGGTTTATGGAACTTGCAATTCAGCAGGCCAAGCTTGCACTGAACAGCCTAGAAGTGCCTGTAGGCTGTGTGATTGTTGAAGATGGGATGGTTGTTGCCACTGGAAGAAATCGCACTACTGAGACTCGAAATGCTACCAGACACGCAGAGATGGAAGCTATTGACATTCTGATTGAGGCATGGCAGAGGAATGGACTTTCAACCTCAGAAGTTGCTGAAAAATGCTCGAAGTGCAAACTTTATGTTACCTGTGAACCTTGCATTATGTGTGTTTCTGCCCTATCAATACTTGGTATAAATGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTAGGTAGCCGTGAGGCACATACAAGTGGTAATTGGCAAGGAAGGGGATTTAAATGCACAGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGATGTTTTTATGAACAGGGAAATCCTAATGCTCCAAATCCTCACAGGCCCCTTGTTCACAATCGGGCAGGTCAATGA

Protein sequence

MTTTYCTASWIKMDSSREDCSSDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDILIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFGGCGSILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAPNPHRPLVHNRAGQ

Homology

[Close]

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot
Match: Q6IDB6 (tRNA-specific adenosine deaminase TAD2 OS=Arabidopsis thaliana OX=3702 GN=TAD2 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-71
Identity = 130/180 (72.22%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 18  EDCSSDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEME 77
           ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG V+A+GRNRT ETRNATRHAEME
Sbjct: 3   EDHCEDSHNYMGFALHQAKLALEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEME 62

Query: 78  AIDILIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFG 137
           AID L+  WQ++GLS S+VAEK SKC LYVTCEPCIMC SALS LGI EVYYGC NDKFG
Sbjct: 63  AIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFG 122

Query: 138 GCGSILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAPNPHRPLV 197
           GCGSILSLHLGS EA      +G+G+KC  GIMA EAV+LF+CFYEQGNPNAP PHRP+V
Sbjct: 123 GCGSILSLHLGSEEAQ-----RGKGYKCRGGIMAEEAVSLFKCFYEQGNPNAPKPHRPVV 177

[Close]

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot
Match: Q5E9J7 (tRNA-specific adenosine deaminase 2 OS=Bos taurus OX=9913 GN=DEADC1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 14  DSSREDCSSDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRH 73
           D +    + +T ++ME A+Q AK AL++ EVPVGC++V +  VV  GRN   +T+NATRH
Sbjct: 12  DGAYSVSAEETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRH 71

Query: 74  AEMEAIDILIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCAN 133
           AEM AID  ++  +R G S SEV E      LYVT EPCIMC +AL ++ I  V YGC N
Sbjct: 72  AEMVAIDQALDWCRRRGRSPSEVFE---HTVLYVTVEPCIMCAAALRLMRIPLVVYGCQN 131

Query: 134 DKFGGCGSILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAP 191
           ++FGGCGS+L +      A       G+ F+CT G  A EAV + + FY+Q NPNAP
Sbjct: 132 ERFGGCGSVLDI------ASADLPSTGKPFQCTPGYRAEEAVEMLKTFYKQENPNAP 179

[Close]

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot
Match: Q7Z6V5 (tRNA-specific adenosine deaminase 2 OS=Homo sapiens OX=9606 GN=ADAT2 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 81/170 (47.65%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 21  SSDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAID 80
           + +T ++ME A+  AK AL + EVPVGC++V +  VV  GRN   +T+NATRHAEM AID
Sbjct: 19  AEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 78

Query: 81  ILIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFGGCG 140
            +++  +++G S SEV E      LYVT EPCIMC +AL ++ I  V YGC N++FGGCG
Sbjct: 79  QVLDWCRQSGKSPSEVFE---HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCG 138

Query: 141 SILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAP 191
           S+L++      A       GR F+C  G  A EAV + + FY+Q NPNAP
Sbjct: 139 SVLNI------ASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAP 179

[Close]

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot
Match: Q6P6J0 (tRNA-specific adenosine deaminase 2 OS=Mus musculus OX=10090 GN=Adat2 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 81/168 (48.21%), Postives = 109/168 (64.88%), Query Frame = 0


Query: 23  DTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDIL 82
           +T ++ME A++ AK AL ++EVPVGC++V +  VV  GRN   +T+NATRHAEM AID +
Sbjct: 21  ETEKWMEEAMRMAKEALENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80

Query: 83  IEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFGGCGSI 142
           ++   ++G S S V E      LYVT EPCIMC +AL ++ I  V YGC N++FGGCGS+
Sbjct: 81  LDWCHQHGQSPSTVFE---HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 140

Query: 143 LSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAP 191
           L++      A       GR F+C  G  A EAV L + FY+Q NPNAP
Sbjct: 141 LNI------ASADLPNTGRPFQCIPGYRAEEAVELLKTFYKQENPNAP 179

[Close]

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot
Match: Q5RIV4 (tRNA-specific adenosine deaminase 2 OS=Danio rerio OX=7955 GN=adat2 PE=2 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 80/171 (46.78%), Postives = 104/171 (60.82%), Query Frame = 0


Query: 22  SDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDI 81
           S+   +M  A   A  AL + EVPVGC++V +  ++  GRN   ET+NATRHAEM A+D 
Sbjct: 19  SEVQTWMAKAFDMAVEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQ 78

Query: 82  LIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFGGCGS 141
           +++ W R  L   +  E C +  LYVT EPCIMC +AL +L I  V YGC N++FGGCGS
Sbjct: 79  VLD-WCR--LREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGS 138

Query: 142 ILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAPNP 193
           +L +       HT     G  FKC AG  A EAV + + FY+Q NPNAP P
Sbjct: 139 VLDVS-SDHLPHT-----GTSFKCIAGYRAEEAVEMLKTFYKQENPNAPKP 180

[Close]

BLAST of CmaCh11G003610 vs. TAIR 10
Match: AT1G48175.1 (Cytidine/deoxycytidylate deaminase family protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 130/180 (72.22%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 18  EDCSSDTLRFMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEME 77
           ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG V+A+GRNRT ETRNATRHAEME
Sbjct: 3   EDHCEDSHNYMGFALHQAKLALEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEME 62

Query: 78  AIDILIEAWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFG 137
           AID L+  WQ++GLS S+VAEK SKC LYVTCEPCIMC SALS LGI EVYYGC NDKFG
Sbjct: 63  AIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFG 122

Query: 138 GCGSILSLHLGSREAHTSGNWQGRGFKCTAGIMASEAVALFRCFYEQGNPNAPNPHRPLV 197
           GCGSILSLHLGS EA      +G+G+KC  GIMA EAV+LF+CFYEQGNPNAP PHRP+V
Sbjct: 123 GCGSILSLHLGSEEAQ-----RGKGYKCRGGIMAEEAVSLFKCFYEQGNPNAPKPHRPVV 177

[Close]

BLAST of CmaCh11G003610 vs. TAIR 10
Match: AT1G68720.1 (tRNA arginine adenosine deaminase )

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-13
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 27   FMELAIQQAKLALNSLEVPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDILIEAW 86
            FM  A+ +AK A ++ EVPVG V+V DG ++A G N   E R++T HAEM  I       
Sbjct: 1113 FMREALVEAKKAADTWEVPVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI------- 1172

Query: 87   QRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYGCANDKFGGCGSILSLH 146
             R G S +  + + +   LYVT EPC MC  A+    +N + +G  N   G  GS + L 
Sbjct: 1173 -REG-SKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLF 1225

Query: 147  LG 149
             G
Sbjct: 1233 PG 1225

[Close]

BLAST of CmaCh11G003610 vs. TAIR 10
Match: AT5G28050.1 (Cytidine/deoxycytidylate deaminase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 26  RFMELAIQQAKLALNSLE-VPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDILIE 85
           +F+  A+++A   ++  +  P G VIV +  VVA+  N   +  + T HAE+ AI    E
Sbjct: 32  KFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIR---E 91

Query: 86  AWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYG 131
           A ++  L+  E++E    C++Y +CEPC MC  A+ +  +  + YG
Sbjct: 92  ACKK--LNKIELSE----CEIYASCEPCPMCFGAIHLSRLKRLVYG 128

[Close]

BLAST of CmaCh11G003610 vs. TAIR 10
Match: AT5G28050.2 (Cytidine/deoxycytidylate deaminase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 26  RFMELAIQQAKLALNSLE-VPVGCVIVEDGMVVATGRNRTTETRNATRHAEMEAIDILIE 85
           +F+  A+++A   ++  +  P G VIV +  VVA+  N   +  + T HAE+ AI    E
Sbjct: 51  KFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIR---E 110

Query: 86  AWQRNGLSTSEVAEKCSKCKLYVTCEPCIMCVSALSILGINEVYYG 131
           A ++  L+  E++E    C++Y +CEPC MC  A+ +  +  + YG
Sbjct: 111 ACKK--LNKIELSE----CEIYASCEPCPMCFGAIHLSRLKRLVYG 147

The following BLAST results are available for this feature:

BLAST of CmaCh11G003610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IDB6	1.7e-71	72.22	tRNA-specific adenosine deaminase TAD2 OS=Arabidopsis thaliana OX=3702 GN=TAD2 P...	[more]
Q5E9J7	1.7e-36	47.46	tRNA-specific adenosine deaminase 2 OS=Bos taurus OX=9913 GN=DEADC1 PE=2 SV=1	[more]
Q7Z6V5	2.5e-35	47.65	tRNA-specific adenosine deaminase 2 OS=Homo sapiens OX=9606 GN=ADAT2 PE=1 SV=1	[more]
Q6P6J0	3.3e-35	48.21	tRNA-specific adenosine deaminase 2 OS=Mus musculus OX=10090 GN=Adat2 PE=1 SV=1	[more]
Q5RIV4	2.1e-34	46.78	tRNA-specific adenosine deaminase 2 OS=Danio rerio OX=7955 GN=adat2 PE=2 SV=2	[more]

BLAST of CmaCh11G003610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48175.1	1.2e-72	72.22	Cytidine/deoxycytidylate deaminase family protein	[more]
AT1G68720.1	2.1e-13	38.52	tRNA arginine adenosine deaminase	[more]
AT5G28050.1	1.9e-06	32.08	Cytidine/deoxycytidylate deaminase family protein	[more]
AT5G28050.2	1.9e-06	32.08	Cytidine/deoxycytidylate deaminase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002125	Cytidine and deoxycytidylate deaminase domain	PFAM	PF00383	dCMP_cyt_deam_1	coord: 25..130 e-value: 1.3E-20 score: 73.1
IPR002125	Cytidine and deoxycytidylate deaminase domain	PROSITE	PS51747	CYT_DCMP_DEAMINASES_2	coord: 22..150 score: 27.166746
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 19..195 e-value: 1.0E-55 score: 190.0
None	No IPR available	PIRSR	PIRSR006769-3	PIRSR006769-3	coord: 25..134 e-value: 2.7E-8 score: 30.9
None	No IPR available	PIRSR	PIRSR006769-1	PIRSR006769-1	coord: 25..134 e-value: 2.7E-8 score: 30.9
None	No IPR available	PANTHER	PTHR11079:SF149	TRNA-SPECIFIC ADENOSINE DEAMINASE 2	coord: 15..194
None	No IPR available	PANTHER	PTHR11079	CYTOSINE DEAMINASE FAMILY MEMBER	coord: 15..194
None	No IPR available	CDD	cd01285	nucleoside_deaminase	coord: 28..144 e-value: 7.44419E-36 score: 120.029
IPR016192	APOBEC/CMP deaminase, zinc-binding	PROSITE	PS00903	CYT_DCMP_DEAMINASES_1	coord: 73..119
IPR016193	Cytidine deaminase-like	SUPERFAMILY	53927	Cytidine deaminase-like	coord: 18..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003610.1	CmaCh11G003610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002100	tRNA wobble adenosine to inosine editing
molecular_function	GO:0052717	tRNA-specific adenosine-34 deaminase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity