CmaCh11G001720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G001720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionstress response protein NST1
LocationCma_Chr11: 900140 .. 902424 (+)
RNA-Seq ExpressionCmaCh11G001720
SyntenyCmaCh11G001720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACTTTGGTTTAGTGAAAACTTGTAAATTTATGAAATCGGAGGGAGGTCGCAAACGGGATCCGACGCCGAGCAGCACGGCTCGAGAAGAATCCATGGTGGCCATTTCCCTTTACAGAGGGAACCTCCACAGGGTCCCCGATGTTCCTCGTCGGTGGCTTATGCCCACCCACAACATCTCTGTTAGAGACTTCAAATCCCTTTTGCAGCGTCGTTCGAAAGCCCTCTCTCGTCTCCTCGCCACCACCTCTTCTTCGCCGGCCAAAGTTTCTACTTCCCCTGACCCTAATCGTAATTCCAATTCTTCAATTAAACCAGACGGCGAAGGACCCAGAACTAACGGGTCTGCGCCTGAGGTTCCATTGGAAACTGAAAGGGTTAGTGTTGGCGGTGAAAGACCTTCTGCGGAGGTCAAGGAGAGGAAGAAGTCGGACAATGGTGATGACTGTATGGCAAAATCGGCTGATGGGTTTGATTCTGTGAATGGCTCGAGACCTTGTTTTAACGAGCAAGGTTCTGATCCAGTGGAAAATGGTGGTGCGCATGCAAAAGATGAAAATCCTGCTGTATTAGAAAACCCTAACAAAGAGGTATTGATTATGACCAACTCTTTAGATTTTCATTTTGTTTCTTTTTTGTTGCTATTTCATTTTGTATATATTCTGTGTTTGAAATCCCATTGGTCTAACCTATTCCAATTTAATGTCCGGTTGAGATAGTTTATTTGGTTCTTTCTGAATTTAGGTGCGGTTGTGATTAGGTTCAACAAAATGTTTACTTGGAGAGTTATTTCTGTAACATCCACAGTTATCAACTTATTCTACAGAATTGGAAAATGAAGGATGACTACTTAACGAGGCTTTCAGAAATTTAGGAATGTTTTGAGATAACTAATGCAAATTGTTGCTAAGGTTGTAAATTTTTTAGAGCCTTCTTTCCTGTTGATAGAAGAATGATAAGAACAATTGAAGTAAAATAAAGATTGTGGCATACTTAAAAAGAGTTCTTGTTGTCTTTAACGGTGGCATTGAAGGAAGAACTTTCAAGCTTGTTGTCGATATGGATCTCAAGCCTCAACAGAGCACTCGGATTTTTCTTTTCCTTCTCTTTTTTTTTCAGCATTTCTTTCTTTTTGCATTCTTCATTAGTATGTATTACTGTGCTAGACAAACAAGGAGGAAGATTTGTTGGATGACAAGGAGAACAGGAAAAGGGAAGTCGAGGAGAAGTTAAACGTTTTGAATGAAAAGAAGCATAATCTTGTGCAAGTGTTAAAACAGGTATATTCTTGATCCTTTCACCTTACCTCCTCGCTCTTGCCCCCTCCCTTCTGCGCTAAAATAAAACCCCATACGTTCCTATGGGATTGGGAAGTGAACTAGATCATGTTCTTGGTGTTGGTTGGCAGATCTTGCATGTGGAAGAAGAATTAAAAAGGCGTAGTAGTGTGCAAGGGACAGCAATTCGCCCTTCTGCTTCCCTTCAAGTGGATGCCTCAGCCGATACAGGATCAATGACCAGGCAGCTTGCTCCTAGAGTAGGCTCTGAAGTGAATGCTAGTGGAGATACTGAAGGTGGAGAAGCTGATGACCTTTTGAACCATAATGTTCTTTCTCGTCAGATGCTTCAGAATAGCAGTATGTCACCTTCTTCAGAGTCTCCTCTTAGAAGGCCTGCCCACATCCAATCATATATGGTAATTGCTGTCACATGATTTGTGTGAATTTAGTTGAGTTATATATGAGCACTATACTTGTTATATTTACTTTATTTGGGTGATTAGGGATACATAAATGACATTCAATAGTGCCTTGAGAATTCATTGTGATTGCTTGTCTGTGGAACTTCTTTCGTTTTCCTATCAAAATTGCATAAAAGTATCAGTTTTCGGAGTTCTTGGTGGTTCTTTAGTGGGTTGGGTATGTAGTCAACATCGATGTCCACTGAGAAAATGTATCAGAATTTTAAATTGTACCATTTCCTTTTGTTTATGCTTGATGTTAAAATCAGGCATACATGCATCTGTTTTTATCATTTTACTAGTGAAGTGAGTGAGACGAAGATAAAATAACATTACATGTGCAGAGCTCACATCCATCCCGAGGAAATTTTAGCGTATCTGGGAGTCCATCGTGCCTTCCTCCGACTGGGCAATCAGGGCTTCCCCCAAACCTGCCCACAGTGTCTGTATCTGGAACCAATTACATTGCATCTTCACCTTCTCCTGCAGCATCTGGGGGCACCTCAGTTCTCAGAGATGCCCGGCAGCCTAGCCCATGGAATTAG

mRNA sequence

TGACTTTGGTTTAGTGAAAACTTGTAAATTTATGAAATCGGAGGGAGGTCGCAAACGGGATCCGACGCCGAGCAGCACGGCTCGAGAAGAATCCATGGTGGCCATTTCCCTTTACAGAGGGAACCTCCACAGGGTCCCCGATGTTCCTCGTCGGTGGCTTATGCCCACCCACAACATCTCTGTTAGAGACTTCAAATCCCTTTTGCAGCGTCGTTCGAAAGCCCTCTCTCGTCTCCTCGCCACCACCTCTTCTTCGCCGGCCAAAGTTTCTACTTCCCCTGACCCTAATCGTAATTCCAATTCTTCAATTAAACCAGACGGCGAAGGACCCAGAACTAACGGGTCTGCGCCTGAGGTTCCATTGGAAACTGAAAGGGTTAGTGTTGGCGGTGAAAGACCTTCTGCGGAGGTCAAGGAGAGGAAGAAGTCGGACAATGGTGATGACTGTATGGCAAAATCGGCTGATGGGTTTGATTCTGTGAATGGCTCGAGACCTTGTTTTAACGAGCAAGGTTCTGATCCAGTGGAAAATGGTGGTGCGCATGCAAAAGATGAAAATCCTGCTGTATTAGAAAACCCTAACAAAGAGACAAACAAGGAGGAAGATTTGTTGGATGACAAGGAGAACAGGAAAAGGGAAGTCGAGGAGAAGTTAAACGTTTTGAATGAAAAGAAGCATAATCTTGTGCAAGTGTTAAAACAGATCTTGCATGTGGAAGAAGAATTAAAAAGGCGTAGTAGTGTGCAAGGGACAGCAATTCGCCCTTCTGCTTCCCTTCAAGTGGATGCCTCAGCCGATACAGGATCAATGACCAGGCAGCTTGCTCCTAGAGTAGGCTCTGAAGTGAATGCTAGTGGAGATACTGAAGGTGGAGAAGCTGATGACCTTTTGAACCATAATGTTCTTTCTCGTCAGATGCTTCAGAATAGCAGTATGTCACCTTCTTCAGAGTCTCCTCTTAGAAGGCCTGCCCACATCCAATCATATATGAGCTCACATCCATCCCGAGGAAATTTTAGCGTATCTGGGAGTCCATCGTGCCTTCCTCCGACTGGGCAATCAGGGCTTCCCCCAAACCTGCCCACAGTGTCTGTATCTGGAACCAATTACATTGCATCTTCACCTTCTCCTGCAGCATCTGGGGGCACCTCAGTTCTCAGAGATGCCCGGCAGCCTAGCCCATGGAATTAG

Coding sequence (CDS)

ATGAAATCGGAGGGAGGTCGCAAACGGGATCCGACGCCGAGCAGCACGGCTCGAGAAGAATCCATGGTGGCCATTTCCCTTTACAGAGGGAACCTCCACAGGGTCCCCGATGTTCCTCGTCGGTGGCTTATGCCCACCCACAACATCTCTGTTAGAGACTTCAAATCCCTTTTGCAGCGTCGTTCGAAAGCCCTCTCTCGTCTCCTCGCCACCACCTCTTCTTCGCCGGCCAAAGTTTCTACTTCCCCTGACCCTAATCGTAATTCCAATTCTTCAATTAAACCAGACGGCGAAGGACCCAGAACTAACGGGTCTGCGCCTGAGGTTCCATTGGAAACTGAAAGGGTTAGTGTTGGCGGTGAAAGACCTTCTGCGGAGGTCAAGGAGAGGAAGAAGTCGGACAATGGTGATGACTGTATGGCAAAATCGGCTGATGGGTTTGATTCTGTGAATGGCTCGAGACCTTGTTTTAACGAGCAAGGTTCTGATCCAGTGGAAAATGGTGGTGCGCATGCAAAAGATGAAAATCCTGCTGTATTAGAAAACCCTAACAAAGAGACAAACAAGGAGGAAGATTTGTTGGATGACAAGGAGAACAGGAAAAGGGAAGTCGAGGAGAAGTTAAACGTTTTGAATGAAAAGAAGCATAATCTTGTGCAAGTGTTAAAACAGATCTTGCATGTGGAAGAAGAATTAAAAAGGCGTAGTAGTGTGCAAGGGACAGCAATTCGCCCTTCTGCTTCCCTTCAAGTGGATGCCTCAGCCGATACAGGATCAATGACCAGGCAGCTTGCTCCTAGAGTAGGCTCTGAAGTGAATGCTAGTGGAGATACTGAAGGTGGAGAAGCTGATGACCTTTTGAACCATAATGTTCTTTCTCGTCAGATGCTTCAGAATAGCAGTATGTCACCTTCTTCAGAGTCTCCTCTTAGAAGGCCTGCCCACATCCAATCATATATGAGCTCACATCCATCCCGAGGAAATTTTAGCGTATCTGGGAGTCCATCGTGCCTTCCTCCGACTGGGCAATCAGGGCTTCCCCCAAACCTGCCCACAGTGTCTGTATCTGGAACCAATTACATTGCATCTTCACCTTCTCCTGCAGCATCTGGGGGCACCTCAGTTCTCAGAGATGCCCGGCAGCCTAGCCCATGGAATTAG

Protein sequence

MKSEGGRKRDPTPSSTAREESMVAISLYRGNLHRVPDVPRRWLMPTHNISVRDFKSLLQRRSKALSRLLATTSSSPAKVSTSPDPNRNSNSSIKPDGEGPRTNGSAPEVPLETERVSVGGERPSAEVKERKKSDNGDDCMAKSADGFDSVNGSRPCFNEQGSDPVENGGAHAKDENPAVLENPNKETNKEEDLLDDKENRKREVEEKLNVLNEKKHNLVQVLKQILHVEEELKRRSSVQGTAIRPSASLQVDASADTGSMTRQLAPRVGSEVNASGDTEGGEADDLLNHNVLSRQMLQNSSMSPSSESPLRRPAHIQSYMSSHPSRGNFSVSGSPSCLPPTGQSGLPPNLPTVSVSGTNYIASSPSPAASGGTSVLRDARQPSPWN
Homology
[Close]
BLAST of CmaCh11G001720 vs. TAIR 10
Match: AT3G47850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 195.3 bits (495), Expect = 9.2e-50
Identity = 168/392 (42.86%), Postives = 211/392 (53.83%), Query Frame = 0 

Query: 7   RKRDPTPSSTAREESMVAISLYRGNLHRVPDVPRRWLMPTHNISVRDFKSLLQRRSKALS 66
           ++R      T +++ MVAIS+YRGNLH+VPDVPRRW+MP  N+S +DFKSLL RR KALS
Sbjct: 16  QRRIRRTEETQKQKKMVAISMYRGNLHKVPDVPRRWIMPDRNLSFKDFKSLLHRRKKALS 75

Query: 67  RLLATTSSSPAKVSTSPDPNRNSNSSIKPDGEGP----RTNGSAPEVPL-ETERVSVGGE 126
           RL             +P+ N +  + +  D E P      NGS+ +  L E +R  + G 
Sbjct: 76  RL-----------PLNPNLNLSVKTELVTDQENPILPSEANGSSGKQKLFEVKREEICGN 135

Query: 127 RPSAEVKERKKSDNGDDCMAKSADGFDSVNGSRPCFNEQGSDPVENGGAHAKDENPAVLE 186
           R    VK  + +D G        +G  S  G RP    +  +          D  P    
Sbjct: 136 R----VKGDENNDRG-------FEGARSDGGDRPGRVTESKE---------TDNVPHKYA 195

Query: 187 NPNKETNK-EEDLLDDKENRKREVEEKLNVLNEKKHNLVQVLKQILHVEEELKRRSSV-- 246
              +ETN+  E +  + E +++EVEE+L VLN KKHNLVQVLKQIL+ EEELKRRS +  
Sbjct: 196 AKEEETNEAAEKVPSETELKRKEVEERLQVLNAKKHNLVQVLKQILNAEEELKRRSYMQQ 255

Query: 247 QGT--AIRPSASLQVDASADTGSMTRQLAPRVGSEVNASGDTEGGEADDLLNH-NVLSRQ 306
           QGT  A RPS  L VD S D+G              N     EGGE DD  NH N  +R 
Sbjct: 256 QGTTVATRPSLPLHVDVSNDSGG-------------NVGTHMEGGETDDAANHNNAQTRT 315

Query: 307 MLQNSSMSPSSESPLRRPAHI-QSYMSSHPSRGNFSVSGSPSCLPPTGQSGLPPNLPTVS 366
           +L+    S SSESPLRR A + Q  M  H SR +          P  G S   P + TVS
Sbjct: 316 LLRLCGASSSSESPLRRAAALSQHNMVPHTSRWS----------PLVGPSQPGPAV-TVS 352

Query: 367 VSGTNYIASSPSPAASGGTSVLRDARQPSPWN 387
            SGTNYIASSPSPA  GGTSV R++R  SPWN
Sbjct: 376 ASGTNYIASSPSPAGFGGTSVFRESRLQSPWN 352

The following BLAST results are available for this feature:
BLAST of CmaCh11G001720 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh11G001720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47850.19.2e-5042.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 187..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..340
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..98
NoneNo IPR availablePANTHERPTHR36764TRNA (ILE)-LYSIDINE SYNTHASEcoord: 22..386

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G001720.1CmaCh11G001720.1mRNA