CmaCh11G000650 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G000650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr11: 331673 .. 333583 (+)
RNA-Seq Expression	CmaCh11G000650
Synteny	CmaCh11G000650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAAGAAAGGCAATTCTGACTTCCCTCATGCTGGAAAACTCGCTCTTTTCGACTCGGTCGAGCTATTCCCAGGTGACTCGGTTTTTGCCCTCTTCTCTTTCTCATCAATCCCGCTTTCCCCCTTTCACAACAAATCATCGTATATTGTTTTTCTCATCGAAGCCTCATTCGCTTCTCGAGCTTGTTTTGGCCAACGATTGGTCGGAAATTTTAGAAACAGAGTTAGAGACTTTAAACCCTACACTCACACACGAAACTATGGTATATGTCTTGAAAAGACTCGATAAAGAACCCCAAAAGGCCTCGGATTTCTTCAACTGGGCCTGCGGGAAAAATGGGTCTACTCAGAGTTCTCCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAATCGATGAAGCAGTTTTGGATTACGTTGAGGGTCATGAAAGAACGGGGGTTTTACCTTGATGAGGAAACTTATTTGACCATTTTGGGAGTCTTGAAGAGGGCAAAGAAGGCCGCTGATGCCACGGCTTTGACTCATTTTTACAATCGGATGCTGCAAGAAAACGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTCTACGGTCAGAGTGGAATAATGATGTTGCTGAAAAACTTGAGGGGCTTGGCATTGTATTATCAGATAGCTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCATTGAAAGGCTTGAGCTTTTTTCATTGGGTTGGTTGTAGGTCGGATTATGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTTTGGGACGGGATGACTCGATTGAGGCGTTCTGGGGTTTGGTTGAAGAAATGAAGAATGCTGGTCATGAGATCGATATCGATACTTACATAAAGATCTCTAGGCAGTTTCAGAGGACCAAGATGATAGGTGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCTTACAAACCCTCATTGCAGGATTGCAGTGTGCTTTTGCGGAGCATCTCTGCTAGTGATAATCCAGATTTGAGCTTAGTGTTTAGAGTGGCCAAGAAATTCGAGGCGACAGGGTACAGTCTCTCCAAAGCTGTTTACGATGGAATCCATAGGTCATTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTAAAGTCTTTGAGAAATGCAGGGTATGAACCTGACAATGTTACATACAGCCAATTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTGAAGTGCTGGATGAGATGGAAGCACAAGGATGCGTTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACATTGTACTGCCAACGAAGTTGACAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAAGAATTGTGATCCCGACGCCGATCTTTTGGATGTTCTAATTAGCGGTTTCCTTGGCCAGAAAAAGTTAGATGGTGCTTACCAATTGCTGATTGAGTTGGTGAATAAGGCTCATTTAAGACCATGGCAGGCAACATACAAACATCTAATCGAAAAGCTCCTTGAAGTAAGGAAACTTGAGGAAGCTATTTCGCTTCTTAGTTTAATGAAGAAACAGAATTATCCACCTTCTCCTGAACCATTTGTTCAATATATCTCCAAGTTTGGTACAGTGGAGGATGCTGCTGAATTCTTGAAGGCTCTGAGCTCCAAAGAATATCCTTCCATGTCTGCCTATCTACATATTTTTAATTCATTTTTCAACGAAGGTAGACATTCTGAGGCCAAAGATCTGCTCTTTAAATGCCCACATCACATTCGAAAGCATAGTGAAATTTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACCACCACCACCACTACTACTACTACTCAATCTTCTCCCAATCCAATTGGAACTTAA

mRNA sequence

ATGGCGAGAAGAAAGGCAATTCTGACTTCCCTCATGCTGGAAAACTCGCTCTTTTCGACTCGGTCGAGCTATTCCCAGGTGACTCGGTTTTTGCCCTCTTCTCTTTCTCATCAATCCCGCTTTCCCCCTTTCACAACAAATCATCGTATATTGTTTTTCTCATCGAAGCCTCATTCGCTTCTCGAGCTTGTTTTGGCCAACGATTGGTCGGAAATTTTAGAAACAGAGTTAGAGACTTTAAACCCTACACTCACACACGAAACTATGGTATATGTCTTGAAAAGACTCGATAAAGAACCCCAAAAGGCCTCGGATTTCTTCAACTGGGCCTGCGGGAAAAATGGGTCTACTCAGAGTTCTCCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAATCGATGAAGCAGTTTTGGATTACGTTGAGGGTCATGAAAGAACGGGGGTTTTACCTTGATGAGGAAACTTATTTGACCATTTTGGGAGTCTTGAAGAGGGCAAAGAAGGCCGCTGATGCCACGGCTTTGACTCATTTTTACAATCGGATGCTGCAAGAAAACGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTCTACGGTCAGAGTGGAATAATGATGTTGCTGAAAAACTTGAGGGGCTTGGCATTGTATTATCAGATAGCTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCATTGAAAGGCTTGAGCTTTTTTCATTGGGTTGGTTGTAGGTCGGATTATGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTTTGGGACGGGATGACTCGATTGAGGCGTTCTGGGGTTTGGTTGAAGAAATGAAGAATGCTGGTCATGAGATCGATATCGATACTTACATAAAGATCTCTAGGCAGTTTCAGAGGACCAAGATGATAGGTGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCTTACAAACCCTCATTGCAGGATTGCAGTGTGCTTTTGCGGAGCATCTCTGCTAGTGATAATCCAGATTTGAGCTTAGTGTTTAGAGTGGCCAAGAAATTCGAGGCGACAGGGTACAGTCTCTCCAAAGCTGTTTACGATGGAATCCATAGGTCATTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTAAAGTCTTTGAGAAATGCAGGGTATGAACCTGACAATGTTACATACAGCCAATTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTGAAGTGCTGGATGAGATGGAAGCACAAGGATGCGTTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACATTGTACTGCCAACGAAGTTGACAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAAGAATTGTGATCCCGACGCCGATCTTTTGGATGTTCTAATTAGCGGTTTCCTTGGCCAGAAAAAGTTAGATGGTGCTTACCAATTGCTGATTGAGTTGGTGAATAAGGCTCATTTAAGACCATGGCAGGCAACATACAAACATCTAATCGAAAAGCTCCTTGAAGTAAGGAAACTTGAGGAAGCTATTTCGCTTCTTAGTTTAATGAAGAAACAGAATTATCCACCTTCTCCTGAACCATTTGTTCAATATATCTCCAAGTTTGGTACAGTGGAGGATGCTGCTGAATTCTTGAAGGCTCTGAGCTCCAAAGAATATCCTTCCATGTCTGCCTATCTACATATTTTTAATTCATTTTTCAACGAAGGTAGACATTCTGAGGCCAAAGATCTGCTCTTTAAATGCCCACATCACATTCGAAAGCATAGTGAAATTTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACCACCACCACCACTACTACTACTACTCAATCTTCTCCCAATCCAATTGGAACTTAA

Coding sequence (CDS)

ATGGCGAGAAGAAAGGCAATTCTGACTTCCCTCATGCTGGAAAACTCGCTCTTTTCGACTCGGTCGAGCTATTCCCAGGTGACTCGGTTTTTGCCCTCTTCTCTTTCTCATCAATCCCGCTTTCCCCCTTTCACAACAAATCATCGTATATTGTTTTTCTCATCGAAGCCTCATTCGCTTCTCGAGCTTGTTTTGGCCAACGATTGGTCGGAAATTTTAGAAACAGAGTTAGAGACTTTAAACCCTACACTCACACACGAAACTATGGTATATGTCTTGAAAAGACTCGATAAAGAACCCCAAAAGGCCTCGGATTTCTTCAACTGGGCCTGCGGGAAAAATGGGTCTACTCAGAGTTCTCCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAATCGATGAAGCAGTTTTGGATTACGTTGAGGGTCATGAAAGAACGGGGGTTTTACCTTGATGAGGAAACTTATTTGACCATTTTGGGAGTCTTGAAGAGGGCAAAGAAGGCCGCTGATGCCACGGCTTTGACTCATTTTTACAATCGGATGCTGCAAGAAAACGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTCTACGGTCAGAGTGGAATAATGATGTTGCTGAAAAACTTGAGGGGCTTGGCATTGTATTATCAGATAGCTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCATTGAAAGGCTTGAGCTTTTTTCATTGGGTTGGTTGTAGGTCGGATTATGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTTTGGGACGGGATGACTCGATTGAGGCGTTCTGGGGTTTGGTTGAAGAAATGAAGAATGCTGGTCATGAGATCGATATCGATACTTACATAAAGATCTCTAGGCAGTTTCAGAGGACCAAGATGATAGGTGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCTTACAAACCCTCATTGCAGGATTGCAGTGTGCTTTTGCGGAGCATCTCTGCTAGTGATAATCCAGATTTGAGCTTAGTGTTTAGAGTGGCCAAGAAATTCGAGGCGACAGGGTACAGTCTCTCCAAAGCTGTTTACGATGGAATCCATAGGTCATTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTAAAGTCTTTGAGAAATGCAGGGTATGAACCTGACAATGTTACATACAGCCAATTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTGAAGTGCTGGATGAGATGGAAGCACAAGGATGCGTTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACATTGTACTGCCAACGAAGTTGACAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAAGAATTGTGATCCCGACGCCGATCTTTTGGATGTTCTAATTAGCGGTTTCCTTGGCCAGAAAAAGTTAGATGGTGCTTACCAATTGCTGATTGAGTTGGTGAATAAGGCTCATTTAAGACCATGGCAGGCAACATACAAACATCTAATCGAAAAGCTCCTTGAAGTAAGGAAACTTGAGGAAGCTATTTCGCTTCTTAGTTTAATGAAGAAACAGAATTATCCACCTTCTCCTGAACCATTTGTTCAATATATCTCCAAGTTTGGTACAGTGGAGGATGCTGCTGAATTCTTGAAGGCTCTGAGCTCCAAAGAATATCCTTCCATGTCTGCCTATCTACATATTTTTAATTCATTTTTCAACGAAGGTAGACATTCTGAGGCCAAAGATCTGCTCTTTAAATGCCCACATCACATTCGAAAGCATAGTGAAATTTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACCACCACCACCACTACTACTACTACTCAATCTTCTCCCAATCCAATTGGAACTTAA

Protein sequence

MARRKAILTSLMLENSLFSTRSSYSQVTRFLPSSLSHQSRFPPFTTNHRILFFSSKPHSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKNGSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADATALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDTYIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKKFEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDVLISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQNYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLLFKCPHHIRKHSEICKLFGSAESKSTTTTTTTTTQSSPNPIGT

Homology

[Close]

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot
Match: Q9STK5 (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 716.1 bits (1847), Expect = 3.6e-205
Identity = 360/620 (58.06%), Postives = 463/620 (74.68%), Query Frame = 0


Query: 1   MARRKAILTSLMLENSLFSTRSSYSQVTRFLPSSLS---HQSRFPPFTTNHRILFFSSKP 60
           M R  AIL+SL    S  STRS  S+      S+LS         P     +   FSSKP
Sbjct: 1   MYRSMAILSSLRHAYSQISTRSYLSRSKVGFSSNLSSPLDSFAIVPSRFLWKFRTFSSKP 60

Query: 61  HSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKNGST 120
            S+L+LVL NDWS+ +E  L   + +LTHET +YVL++L+K P+KA  F +W    +G +
Sbjct: 61  DSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLS 120

Query: 121 QSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADATAL 180
            S+P+YSI+LRI VQ  SMK+FW+TLR MK+ GFYLDE+TY TI G L + K  ADA A+
Sbjct: 121 PSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAV 180

Query: 181 THFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFP 240
            HFY RML+ENAM  V  +V  +V + +W+ +V  +L+ + +VLSD+FVIR LKELR  P
Sbjct: 181 AHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHP 240

Query: 241 LKGLSFFHWV---GCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300
           LK L+FFHWV   G  S Y H+TVTYNA  RVL R +S+  FW +V+EMK AG+++D+DT
Sbjct: 241 LKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDT 300

Query: 301 YIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIK+SRQFQ+++M+ + VKLYE MMDGP+KPS+QDCS+LLR +S S NPDL LVFRV++K
Sbjct: 301 YIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRK 360

Query: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARR 420
           +E+TG SLSKAVYDGIHRSLTS G+FDEAE I K++RNAGYEPDN+TYSQLVFGLCKA+R
Sbjct: 361 YESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKR 420

Query: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480
           LEEA  VLD+MEAQGC PDIKTWTILIQGHC  NE+DKAL CFA M+EK  D D++LLDV
Sbjct: 421 LEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDV 480

Query: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQ 540
           LI GF+   K +GA   L+E+V  A+++PWQ+TYK LI+KLL+++K EEA+ LL +MKKQ
Sbjct: 481 LIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQ 540

Query: 541 NYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLL 600
           NYP   E F  Y++KFGT+EDA +FL  LSSK+ PS +AY H+  +F+ EGR ++AK+LL
Sbjct: 541 NYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLL 600

Query: 601 FKCPHHIRKHSEICKLFGSA 615
           F CPHH + H +I +LFG+A
Sbjct: 601 FICPHHFKTHPKISELFGAA 620

[Close]

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot
Match: Q9M891 (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-85
Identity = 177/546 (32.42%), Postives = 296/546 (54.21%), Query Frame = 0


Query: 76  ELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKNGSTQSSPIYSILLRIFVQNES 135
           EL++ +  ++HE  + VL+ L+  P  A  FF W         SS  Y+ +LRIF  N  
Sbjct: 100 ELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGL 159

Query: 136 MKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADATALTHFYNRMLQENAMDSVVQ 195
           + +FW  +  MK++G  +       +    K+     D   L   +     +N++D V  
Sbjct: 160 VDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCN 219

Query: 196 KVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDYDH 255
           +V  IV++  W  DV ++L  L +      V   L++L   P K L FF W+     + H
Sbjct: 220 RVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGSFKH 279

Query: 256 NTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDTYIKISRQFQRTKMIGDAVKLY 315
           +  TYNA+ARVLG++  ++ F  ++EE+++AG+E++++TY+++S +F +TKMI +AV+L+
Sbjct: 280 DEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELF 339

Query: 316 ELMMDGPYK--PSLQDCSVLLRSISASDNPDLSLVFRVAKKFEATGYSLSKAVYDGIHRS 375
           E  M G     P+   CS+LL+ I  +   D+ L  R  K +   G  +   +   + +S
Sbjct: 340 EFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKS 399

Query: 376 LTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVPD 435
           L S  +F ++  ++K++   GY P     S +  GL +  + +EA E+++ MEA G   D
Sbjct: 400 LRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLD 459

Query: 436 IKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDAD-LLDVLISGFLGQKKLDGAYQLL 495
            K    L++GHC A ++++A  CF KMI K     A    + L+  +    +    Y+L 
Sbjct: 460 DKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLF 519

Query: 496 IELVNKAHLRPWQATYKHLIEKLLEVR-----KLEEAISLLSLMKKQNYPPSPEPFVQYI 555
            ELV +  L+PW +TYK ++  LL  +       EEA+SLL +M+   +PP  +PF+ Y+
Sbjct: 520 SELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYL 579

Query: 556 SKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLLFKCPHHIRKHSEI 614
           S  GT  +A  FLKA++SK++PS S  L +F +     RHSEA+DLL   P +IR+++E+
Sbjct: 580 SNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEV 639

[Close]

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot
Match: Q8LPF1 (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-82
Identity = 173/569 (30.40%), Postives = 304/569 (53.43%), Query Frame = 0


Query: 54  SSKPHSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGK 113
           SS   +++++       + +  ELE+    ++ +  + VL++L+  P  A  FF W    
Sbjct: 84  SSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEA 143

Query: 114 NGSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAAD 173
           +    SS  Y+++LRI   N  + +FW  + VMK++G  L       +    ++    +D
Sbjct: 144 SPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESD 203

Query: 174 ATALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKEL 233
              L   +     +N+ ++V  +V  IV++ EW +DV +++  L +      V   ++ L
Sbjct: 204 LLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERL 263

Query: 234 RNFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDID 293
              P K L FF W+     + H+  TYNA+ARVLG++  ++ F  +V EM++AG+E++I+
Sbjct: 264 DVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIE 323

Query: 294 TYIKISRQFQRTKMIGDAVKLYELMMDG---PYKPSLQDCSVLLRSISASDNPDLSLVFR 353
           TY+++S +F +TK+I +AV L+E+ M G      P+     +LL+ I  +   D+ L  R
Sbjct: 324 TYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSR 383

Query: 354 VAKKFEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLC 413
             K +   G +L+ ++   + +SL S  + +++  ++K ++  GY P     S +   L 
Sbjct: 384 AVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLS 443

Query: 414 KARRLEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDAD 473
           +  + +EA E +D ME+ G   D K    L++G+C +  +D+ALVCF KM+       AD
Sbjct: 444 RKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYAD 503

Query: 474 L-LDVLISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVR-----KLEEA 533
              + L+  +  + ++  AY+LL   V K  L+P  +TYK L+  LL  +       EEA
Sbjct: 504 YSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEA 563

Query: 534 ISLLSLMKKQNYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNE 593
           +SLL +MK   +PP  +PF+ Y S  G   +A  FLKA++S  +P +S  L +F +    
Sbjct: 564 LSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKS 623

Query: 594 GRHSEAKDLLFKCPHHIRKHSEICKLFGS 614
            RHSEA+DLL  CP++IR + ++ +LF +
Sbjct: 624 ARHSEAQDLLSLCPNYIRNNPDVLELFNT 652

[Close]

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.0e-31
Identity = 91/382 (23.82%), Postives = 176/382 (46.07%), Query Frame = 0


Query: 218 GIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFW 277
           G+ L    + R L    +    G  FF W   +  Y H+   Y ++ ++L +     A W
Sbjct: 108 GVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVW 167

Query: 278 GLVEEMKNAGHE-IDIDTYIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRS 337
           GL+EEM+    + I+ + ++ + ++F    M+  A+++ + M    ++P       LL +
Sbjct: 168 GLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDA 227

Query: 338 ISASDNPDLSLVFRVAKKFE--ATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAG 397
           +    +     V   AK FE     + ++   +  +       GK  EA+ ++  +  AG
Sbjct: 228 LCKHGS-----VKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 287

Query: 398 YEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKAL 457
           +EPD V Y+ L+ G   A ++ +A ++L +M  +G  P+   +T+LIQ  C  + +++A+
Sbjct: 288 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 347

Query: 458 VCFAKMIEKNCDPDADLLDVLISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEK 517
             F +M    C+ D      L+SGF    K+D  Y +L +++ K  L P + TY H++  
Sbjct: 348 KVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKG-LMPSELTYMHIMVA 407

Query: 518 LLEVRKLEEAISLLSLMKKQNYPPSPEPF---VQYISKFGTVEDAAEFLKALSSKEY-PS 577
             +    EE + L+  M++  Y P    +   ++   K G V++A      +      P 
Sbjct: 408 HEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPG 467

Query: 578 MSAYLHIFNSFFNEGRHSEAKD 593
           +  ++ + N   ++G   EA D
Sbjct: 468 VDTFVIMINGLASQGCLLEASD 483

[Close]

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot
Match: Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-29
Identity = 96/402 (23.88%), Postives = 186/402 (46.27%), Query Frame = 0


Query: 194 VQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDY 253
           V KV++ +   + N +    L+ + + LS   ++  L+  R+       FF W   R  +
Sbjct: 134 VCKVIDELFALDRNMEAV--LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGF 193

Query: 254 DHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDTYIKISRQFQRTKMIGDAVK 313
            H++ TYN++  +L +    E    ++EEM   G  + ++T+    + F   K    AV 
Sbjct: 194 AHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVG 253

Query: 314 LYELMMDGPYKPSLQDCSVLLRSIS-ASDNPDLSLVFRVAKKFEATGYSLSKAVYDGIHR 373
           ++ELM    +K  ++  + LL S+  A    +  ++F   K+     ++ +   Y  +  
Sbjct: 254 IFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLN 313

Query: 374 SLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVP 433
                    EA  I   + + G +PD V ++ ++ GL ++R+  +A ++   M+++G  P
Sbjct: 314 GWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 373

Query: 434 DIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDVLISGFLGQKKLDGAYQLL 493
           +++++TI+I+  C  + ++ A+  F  M++    PDA +   LI+GF  QKKLD  Y+LL
Sbjct: 374 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 433

Query: 494 IELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQNYPPSPEPFVQYISKFGT 553
            E+  K H  P   TY  LI+ +   +  E A  + + M +    PS   F   +  +  
Sbjct: 434 KEMQEKGH-PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFM 493

Query: 554 VED----AAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEA 591
             +     A + + +     P  ++Y  +      EG+  EA
Sbjct: 494 ARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREA 527

[Close]

BLAST of CmaCh11G000650 vs. TAIR 10
Match: AT3G48250.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 716.1 bits (1847), Expect = 2.5e-206
Identity = 360/620 (58.06%), Postives = 463/620 (74.68%), Query Frame = 0


Query: 1   MARRKAILTSLMLENSLFSTRSSYSQVTRFLPSSLS---HQSRFPPFTTNHRILFFSSKP 60
           M R  AIL+SL    S  STRS  S+      S+LS         P     +   FSSKP
Sbjct: 1   MYRSMAILSSLRHAYSQISTRSYLSRSKVGFSSNLSSPLDSFAIVPSRFLWKFRTFSSKP 60

Query: 61  HSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKNGST 120
            S+L+LVL NDWS+ +E  L   + +LTHET +YVL++L+K P+KA  F +W    +G +
Sbjct: 61  DSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLS 120

Query: 121 QSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADATAL 180
            S+P+YSI+LRI VQ  SMK+FW+TLR MK+ GFYLDE+TY TI G L + K  ADA A+
Sbjct: 121 PSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAV 180

Query: 181 THFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFP 240
            HFY RML+ENAM  V  +V  +V + +W+ +V  +L+ + +VLSD+FVIR LKELR  P
Sbjct: 181 AHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHP 240

Query: 241 LKGLSFFHWV---GCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300
           LK L+FFHWV   G  S Y H+TVTYNA  RVL R +S+  FW +V+EMK AG+++D+DT
Sbjct: 241 LKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDT 300

Query: 301 YIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIK+SRQFQ+++M+ + VKLYE MMDGP+KPS+QDCS+LLR +S S NPDL LVFRV++K
Sbjct: 301 YIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRK 360

Query: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARR 420
           +E+TG SLSKAVYDGIHRSLTS G+FDEAE I K++RNAGYEPDN+TYSQLVFGLCKA+R
Sbjct: 361 YESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKR 420

Query: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480
           LEEA  VLD+MEAQGC PDIKTWTILIQGHC  NE+DKAL CFA M+EK  D D++LLDV
Sbjct: 421 LEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDV 480

Query: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQ 540
           LI GF+   K +GA   L+E+V  A+++PWQ+TYK LI+KLL+++K EEA+ LL +MKKQ
Sbjct: 481 LIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQ 540

Query: 541 NYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLL 600
           NYP   E F  Y++KFGT+EDA +FL  LSSK+ PS +AY H+  +F+ EGR ++AK+LL
Sbjct: 541 NYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLL 600

Query: 601 FKCPHHIRKHSEICKLFGSA 615
           F CPHH + H +I +LFG+A
Sbjct: 601 FICPHHFKTHPKISELFGAA 620

[Close]

BLAST of CmaCh11G000650 vs. TAIR 10
Match: AT3G02490.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 318.2 bits (814), Expect = 1.5e-86
Identity = 177/546 (32.42%), Postives = 296/546 (54.21%), Query Frame = 0


Query: 76  ELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKNGSTQSSPIYSILLRIFVQNES 135
           EL++ +  ++HE  + VL+ L+  P  A  FF W         SS  Y+ +LRIF  N  
Sbjct: 100 ELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGL 159

Query: 136 MKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADATALTHFYNRMLQENAMDSVVQ 195
           + +FW  +  MK++G  +       +    K+     D   L   +     +N++D V  
Sbjct: 160 VDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCN 219

Query: 196 KVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDYDH 255
           +V  IV++  W  DV ++L  L +      V   L++L   P K L FF W+     + H
Sbjct: 220 RVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGSFKH 279

Query: 256 NTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDTYIKISRQFQRTKMIGDAVKLY 315
           +  TYNA+ARVLG++  ++ F  ++EE+++AG+E++++TY+++S +F +TKMI +AV+L+
Sbjct: 280 DEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELF 339

Query: 316 ELMMDGPYK--PSLQDCSVLLRSISASDNPDLSLVFRVAKKFEATGYSLSKAVYDGIHRS 375
           E  M G     P+   CS+LL+ I  +   D+ L  R  K +   G  +   +   + +S
Sbjct: 340 EFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKS 399

Query: 376 LTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVPD 435
           L S  +F ++  ++K++   GY P     S +  GL +  + +EA E+++ MEA G   D
Sbjct: 400 LRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLD 459

Query: 436 IKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDAD-LLDVLISGFLGQKKLDGAYQLL 495
            K    L++GHC A ++++A  CF KMI K     A    + L+  +    +    Y+L 
Sbjct: 460 DKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLF 519

Query: 496 IELVNKAHLRPWQATYKHLIEKLLEVR-----KLEEAISLLSLMKKQNYPPSPEPFVQYI 555
            ELV +  L+PW +TYK ++  LL  +       EEA+SLL +M+   +PP  +PF+ Y+
Sbjct: 520 SELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYL 579

Query: 556 SKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLLFKCPHHIRKHSEI 614
           S  GT  +A  FLKA++SK++PS S  L +F +     RHSEA+DLL   P +IR+++E+
Sbjct: 580 SNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEV 639

[Close]

BLAST of CmaCh11G000650 vs. TAIR 10
Match: AT5G15980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 307.8 bits (787), Expect = 2.1e-83
Identity = 173/569 (30.40%), Postives = 304/569 (53.43%), Query Frame = 0


Query: 54  SSKPHSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGK 113
           SS   +++++       + +  ELE+    ++ +  + VL++L+  P  A  FF W    
Sbjct: 84  SSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEA 143

Query: 114 NGSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAAD 173
           +    SS  Y+++LRI   N  + +FW  + VMK++G  L       +    ++    +D
Sbjct: 144 SPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESD 203

Query: 174 ATALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKEL 233
              L   +     +N+ ++V  +V  IV++ EW +DV +++  L +      V   ++ L
Sbjct: 204 LLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERL 263

Query: 234 RNFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDID 293
              P K L FF W+     + H+  TYNA+ARVLG++  ++ F  +V EM++AG+E++I+
Sbjct: 264 DVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIE 323

Query: 294 TYIKISRQFQRTKMIGDAVKLYELMMDG---PYKPSLQDCSVLLRSISASDNPDLSLVFR 353
           TY+++S +F +TK+I +AV L+E+ M G      P+     +LL+ I  +   D+ L  R
Sbjct: 324 TYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSR 383

Query: 354 VAKKFEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLC 413
             K +   G +L+ ++   + +SL S  + +++  ++K ++  GY P     S +   L 
Sbjct: 384 AVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLS 443

Query: 414 KARRLEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDAD 473
           +  + +EA E +D ME+ G   D K    L++G+C +  +D+ALVCF KM+       AD
Sbjct: 444 RKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYAD 503

Query: 474 L-LDVLISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVR-----KLEEA 533
              + L+  +  + ++  AY+LL   V K  L+P  +TYK L+  LL  +       EEA
Sbjct: 504 YSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEA 563

Query: 534 ISLLSLMKKQNYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNE 593
           +SLL +MK   +PP  +PF+ Y S  G   +A  FLKA++S  +P +S  L +F +    
Sbjct: 564 LSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKS 623

Query: 594 GRHSEAKDLLFKCPHHIRKHSEICKLFGS 614
            RHSEA+DLL  CP++IR + ++ +LF +
Sbjct: 624 ARHSEAQDLLSLCPNYIRNNPDVLELFNT 652

[Close]

BLAST of CmaCh11G000650 vs. TAIR 10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-32
Identity = 91/382 (23.82%), Postives = 176/382 (46.07%), Query Frame = 0


Query: 218 GIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFW 277
           G+ L    + R L    +    G  FF W   +  Y H+   Y ++ ++L +     A W
Sbjct: 108 GVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVW 167

Query: 278 GLVEEMKNAGHE-IDIDTYIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRS 337
           GL+EEM+    + I+ + ++ + ++F    M+  A+++ + M    ++P       LL +
Sbjct: 168 GLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDA 227

Query: 338 ISASDNPDLSLVFRVAKKFE--ATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAG 397
           +    +     V   AK FE     + ++   +  +       GK  EA+ ++  +  AG
Sbjct: 228 LCKHGS-----VKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 287

Query: 398 YEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKAL 457
           +EPD V Y+ L+ G   A ++ +A ++L +M  +G  P+   +T+LIQ  C  + +++A+
Sbjct: 288 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 347

Query: 458 VCFAKMIEKNCDPDADLLDVLISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEK 517
             F +M    C+ D      L+SGF    K+D  Y +L +++ K  L P + TY H++  
Sbjct: 348 KVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKG-LMPSELTYMHIMVA 407

Query: 518 LLEVRKLEEAISLLSLMKKQNYPPSPEPF---VQYISKFGTVEDAAEFLKALSSKEY-PS 577
             +    EE + L+  M++  Y P    +   ++   K G V++A      +      P 
Sbjct: 408 HEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPG 467

Query: 578 MSAYLHIFNSFFNEGRHSEAKD 593
           +  ++ + N   ++G   EA D
Sbjct: 468 VDTFVIMINGLASQGCLLEASD 483

[Close]

BLAST of CmaCh11G000650 vs. TAIR 10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 6.0e-30
Identity = 96/402 (23.88%), Postives = 186/402 (46.27%), Query Frame = 0


Query: 194 VQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELRNFPLKGLSFFHWVGCRSDY 253
           V KV++ +   + N +    L+ + + LS   ++  L+  R+       FF W   R  +
Sbjct: 134 VCKVIDELFALDRNMEAV--LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGF 193

Query: 254 DHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDTYIKISRQFQRTKMIGDAVK 313
            H++ TYN++  +L +    E    ++EEM   G  + ++T+    + F   K    AV 
Sbjct: 194 AHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVG 253

Query: 314 LYELMMDGPYKPSLQDCSVLLRSIS-ASDNPDLSLVFRVAKKFEATGYSLSKAVYDGIHR 373
           ++ELM    +K  ++  + LL S+  A    +  ++F   K+     ++ +   Y  +  
Sbjct: 254 IFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLN 313

Query: 374 SLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARRLEEACEVLDEMEAQGCVP 433
                    EA  I   + + G +PD V ++ ++ GL ++R+  +A ++   M+++G  P
Sbjct: 314 GWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 373

Query: 434 DIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDVLISGFLGQKKLDGAYQLL 493
           +++++TI+I+  C  + ++ A+  F  M++    PDA +   LI+GF  QKKLD  Y+LL
Sbjct: 374 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 433

Query: 494 IELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQNYPPSPEPFVQYISKFGT 553
            E+  K H  P   TY  LI+ +   +  E A  + + M +    PS   F   +  +  
Sbjct: 434 KEMQEKGH-PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFM 493

Query: 554 VED----AAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEA 591
             +     A + + +     P  ++Y  +      EG+  EA
Sbjct: 494 ARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREA 527

The following BLAST results are available for this feature:

BLAST of CmaCh11G000650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STK5	3.6e-205	58.06	Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidop...	[more]
Q9M891	2.2e-85	32.42	Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidop...	[more]
Q8LPF1	2.9e-82	30.40	Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidop...	[more]
Q9FH87	4.0e-31	23.82	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
Q9LZP3	8.4e-29	23.88	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]

BLAST of CmaCh11G000650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48250.1	2.5e-206	58.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G02490.1	1.5e-86	32.42	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15980.1	2.1e-83	30.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G65820.1	2.9e-32	23.82	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	6.0e-30	23.88	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 432..469 e-value: 2.1E-8 score: 34.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 258..287 e-value: 0.66 score: 10.4 coord: 507..535 e-value: 0.26 score: 11.6
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 394..426 e-value: 3.7E-12 score: 45.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 436..469 e-value: 4.4E-8 score: 30.8 coord: 400..434 e-value: 1.4E-10 score: 38.7 coord: 258..291 e-value: 3.1E-4 score: 18.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 363..397 score: 8.725252
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 433..467 score: 11.32308
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 256..290 score: 8.79102
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 504..538 score: 8.516988
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 398..432 score: 13.153618
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 60..217 e-value: 2.0E-8 score: 35.7 coord: 354..486 e-value: 2.3E-31 score: 110.6 coord: 220..353 e-value: 4.7E-13 score: 50.9
None	No IPR available	PANTHER	PTHR47003:SF2	OS01G0970900 PROTEIN	coord: 1..614
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 447..595
IPR044578	Pentatricopeptide repeat-containing protein BIR6-like	PANTHER	PTHR47003	OS01G0970900 PROTEIN	coord: 1..614

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G000650.1	CmaCh11G000650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding