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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. AATTCTTCACTGTTTTCAACCCTTTTCTGGTCAGCTAACTCTTGTGTTTAGTTTGCTATGGCATCCCACACTCGCCCAGCTCCCAACATGCATAAACTCATCAAAAATGACAGGAGAATGTTATCCGCCTCTGATGATAATGCTATGACAAAGCAAATTCTTGCAACACATGCTCCCGATGGGCGCATGGTCGATTTCAAGCCGATTCTGTTCACCATTGAGGATGTTATCCGACGTGCCACTCCCGCTATCGGAAACGTTCTAGATGTGAAACCTCTCTCATCTAATCCATTTGGCTTCCTTTCATGCATACTTAACAGTTGAGACTGATGTGTGGTGTGGTGAAATGATGCAGGGCAATGGCCAGCATGAGGATATGTTGGAGGACCACATCAGCTCGGCCGAGATGGATGGCGTGCTTGAATCACTGACTTACGTCATACAAAAAGTCGGAGCCGAGGTCGAAAATATATACATTTGCTCTTTCTAACCGCCATTTCTGCCATGCTTAGGATGTAAAAGCTATTTTTTTAACTTCCTTTTGAGCTTTTTGACACTGAGACCTTTTGAACTTTTGATGTTTCTGTTGTTGCAGCTAGCATGTAAGTGTTCAGGTGGAGATGCACATGCCTCAACTATGGCTATACTGAACTTACTGTCAAATTACTCATGGGATGCAAAAGTGGTGATCACAATGGCTGCCTTTGCTGTGAACTATGGACAGTATTGGCTTTTGGCTCAACTTTACACAACCAATATGCTAGCCAAGGCTCTGGCTCTGCTCAAGCAATTGCCTGATGTAATGGAGAATTCCAGTTCACTGAAACCTCAATTTGAGGCGCTTAACAAACTCGTCAAGGCTATGTTGGACGTAACGAAATGCATCGTTGAGTTCACCGAGTTGCCATCTCAATACATTTCGCAGGACACGCCTGCAATGTCAGTTGCCATAGCTCATTTTCCTACAGCTACATATTGGACCATCAAAAGTGCGGTGGCGTGCACGTCGCTGATTGAAAGCCTCGTCAGCTTGACTCATGAGTGAGTGATGCACTGCAATATACTCAGAAACATCAATCTAAAGCTTGAGCCTAATTTATACTGAAGGAATTAAAACTCTTCTTCACTGATATGTTTCAGGCGGATTATGTCAACCACCGAAGTATGGGAACTTTCGAGCTTGGCTCACAAGGAAACGAATATATACGAGCATCTCCGGACTCAGCTGGATCTTTGCTTACAACACATAGGTGAGCAATATAAAATTTGATAGCAATTTGCAGACCTTTAAGACTGCAAGCTGAAATGAAAAACACTATATGAACAGATGGTAAGAAACATTTGGAGGCCTATCAGAATCTTGTGAGGATTTCAGAAACTCATCATCTAGACAACATGAAGTTCATCAGGGCCTTGATTTCTGCAAGAGATGACATACAGCCTCTCTATGATGGGACCTCGAAAACCACGGTTTGTTCACAAATCCAATATTCTTCAACTACCTATTCTGTTGAATCTAACTTCATTCTAAAGAGGGGGCTTTTTTGTTTTGGCACAAACAGGTTCACCTTGAAATATTGAAAAGGAAACATGTGTTGCTGTTGATCTCGGATCTTGATATCTCCCATGAAGAGGTTATGGTTCTAGACAACTTATTCAAAGAGTCACAACAACGACAGGAAATTCGATATGAGATAGTGTGGATTCCGATCATCGATCAATCGATCGAACAGCAAGGCAAGAATAAACACACGTTTAAGGAGGTGCAAATGATGATGCCATGGTTCAGTGTGCATGAGCCTTCAATAATTGAGCGCTCAGTCATAAGGTTCATCAAAGAAAAATGGAACTTCACAAAGAAGACAATCTTAGTAGCCTTAGATCCACAAGGAAAGGTGTCTTCCACCAATGCCCTTCACATGCTTTGGATATGGGGAAATCAAGCCTTCCCTTTCACATCAGAGAGGGAAGAAGCGCTCTGGAAAACAGAGAGCTGGAGACTCGAACTTCTCATAGATGGCATAGATTTATCTATTCTCGACTGGGTATCTCCATTAACCGAAATCTTTCACCATTTTTTTAAACTTACGCAAATATTTTTGAAGAACGACTGACGAAAGGGGTTTGTTTCTTTTTGTTTCTACTTTCATCAGGCGGCAGAAGGAAGATACATTTGTCTATTTGGAGGGGAAGACATGGAATGGATCAAGGAGTTCACAATGAAAACAAAACAAGTAGCAGAAGAAGCAAAAGTAGACTTACAAATGGCGTATGTGGGGAAGAACAATGCGAAAGAACGCGTCAGGAAAATCACCATCATGATTGGAGAAAACAAGCTCAGCCATTACTGGCCAGATTCCACATTGATCTGGTTCTTCTGGGCAAGATTAGAGAGCATGATGTACTCAAAATTAAACCATGGAAGAACAGTTGAGAATGACCAAATAATGCAAGAGATTATGACCCTTTTGAGCTTCGATGGAAGTGACAAAGGGTGGGCCATTTTCTTCGGAAGAGGAGGGGAAATGACAAGAGCCAAAGGAGAAACTGCTCTTGGTTGCATATTGGCATACGAGGAGTGGAAAACAGAGGTGGAAGAGAAGGGATTTCTGACGGCGTTGGCTGAGTATCTGCAGCAACTTCGAACCCCACATCACTGCAACCGCCTGATTCTGCCGGGACTGGCCGGAAACATACCGGAAAACGTGGTGTGTGCAGAGTGTGGAAGGGCCATGGAAAAGTACCTGATGTACCGATGCTGCGTGGAATGATTAAACCGAAATGGAAGAAGGGATATGGGAAGTTTGTTTGTTTGTTTGTTTTCCAGAAATCTTTTCAGGCAGTTTATTTTGGAAAAGTTGTCTACTTTGATTGAGTTTTGTTGTTTCTTCATGTTGGGTATGCGTTTAAAGAGATCTCTCCATGTACTGTGTATGGTGGAAGATCAAACCATAAATAAAGCTTTATCATTTCTTTCTCTC mRNA sequence AATTCTTCACTGTTTTCAACCCTTTTCTGGTCAGCTAACTCTTGTGTTTAGTTTGCTATGGCATCCCACACTCGCCCAGCTCCCAACATGCATAAACTCATCAAAAATGACAGGAGAATGTTATCCGCCTCTGATGATAATGCTATGACAAAGCAAATTCTTGCAACACATGCTCCCGATGGGCGCATGGTCGATTTCAAGCCGATTCTGTTCACCATTGAGGATGTTATCCGACGTGCCACTCCCGCTATCGGAAACGTTCTAGATGGCAATGGCCAGCATGAGGATATGTTGGAGGACCACATCAGCTCGGCCGAGATGGATGGCGTGCTTGAATCACTGACTTACGTCATACAAAAAGTCGGAGCCGAGCTAGCATGTAAGTGTTCAGGTGGAGATGCACATGCCTCAACTATGGCTATACTGAACTTACTGTCAAATTACTCATGGGATGCAAAAGTGGTGATCACAATGGCTGCCTTTGCTGTGAACTATGGACAGTATTGGCTTTTGGCTCAACTTTACACAACCAATATGCTAGCCAAGGCTCTGGCTCTGCTCAAGCAATTGCCTGATGTAATGGAGAATTCCAGTTCACTGAAACCTCAATTTGAGGCGCTTAACAAACTCGTCAAGGCTATGTTGGACGTAACGAAATGCATCGTTGAGTTCACCGAGTTGCCATCTCAATACATTTCGCAGGACACGCCTGCAATGTCAGTTGCCATAGCTCATTTTCCTACAGCTACATATTGGACCATCAAAAGTGCGGTGGCGTGCACGTCGCTGATTGAAAGCCTCGTCAGCTTGACTCATGAGCGGATTATGTCAACCACCGAAGTATGGGAACTTTCGAGCTTGGCTCACAAGGAAACGAATATATACGAGCATCTCCGGACTCAGCTGGATCTTTGCTTACAACACATAGATGGTAAGAAACATTTGGAGGCCTATCAGAATCTTGTGAGGATTTCAGAAACTCATCATCTAGACAACATGAAGTTCATCAGGGCCTTGATTTCTGCAAGAGATGACATACAGCCTCTCTATGATGGGACCTCGAAAACCACGGTTCACCTTGAAATATTGAAAAGGAAACATGTGTTGCTGTTGATCTCGGATCTTGATATCTCCCATGAAGAGGTTATGGTTCTAGACAACTTATTCAAAGAGTCACAACAACGACAGGAAATTCGATATGAGATAGTGTGGATTCCGATCATCGATCAATCGATCGAACAGCAAGGCAAGAATAAACACACGTTTAAGGAGGTGCAAATGATGATGCCATGGTTCAGTGTGCATGAGCCTTCAATAATTGAGCGCTCAGTCATAAGGTTCATCAAAGAAAAATGGAACTTCACAAAGAAGACAATCTTAGTAGCCTTAGATCCACAAGGAAAGGTGTCTTCCACCAATGCCCTTCACATGCTTTGGATATGGGGAAATCAAGCCTTCCCTTTCACATCAGAGAGGGAAGAAGCGCTCTGGAAAACAGAGAGCTGGAGACTCGAACTTCTCATAGATGGCATAGATTTATCTATTCTCGACTGGGCGGCAGAAGGAAGATACATTTGTCTATTTGGAGGGGAAGACATGGAATGGATCAAGGAGTTCACAATGAAAACAAAACAAGTAGCAGAAGAAGCAAAAGTAGACTTACAAATGGCGTATGTGGGGAAGAACAATGCGAAAGAACGCGTCAGGAAAATCACCATCATGATTGGAGAAAACAAGCTCAGCCATTACTGGCCAGATTCCACATTGATCTGGTTCTTCTGGGCAAGATTAGAGAGCATGATGTACTCAAAATTAAACCATGGAAGAACAGTTGAGAATGACCAAATAATGCAAGAGATTATGACCCTTTTGAGCTTCGATGGAAGTGACAAAGGGTGGGCCATTTTCTTCGGAAGAGGAGGGGAAATGACAAGAGCCAAAGGAGAAACTGCTCTTGGTTGCATATTGGCATACGAGGAGTGGAAAACAGAGGTGGAAGAGAAGGGATTTCTGACGGCGTTGGCTGAGTATCTGCAGCAACTTCGAACCCCACATCACTGCAACCGCCTGATTCTGCCGGGACTGGCCGGAAACATACCGGAAAACGTGGTGTGTGCAGAGTGTGGAAGGGCCATGGAAAAGTACCTGATGTACCGATGCTGCGTGGAATGATTAAACCGAAATGGAAGAAGGGATATGGGAAGTTTGTTTGTTTGTTTGTTTTCCAGAAATCTTTTCAGGCAGTTTATTTTGGAAAAGTTGTCTACTTTGATTGAGTTTTGTTGTTTCTTCATGTTGGGTATGCGTTTAAAGAGATCTCTCCATGTACTGTGTATGGTGGAAGATCAAACCATAAATAAAGCTTTATCATTTCTTTCTCTC Coding sequence (CDS) ATGGCATCCCACACTCGCCCAGCTCCCAACATGCATAAACTCATCAAAAATGACAGGAGAATGTTATCCGCCTCTGATGATAATGCTATGACAAAGCAAATTCTTGCAACACATGCTCCCGATGGGCGCATGGTCGATTTCAAGCCGATTCTGTTCACCATTGAGGATGTTATCCGACGTGCCACTCCCGCTATCGGAAACGTTCTAGATGGCAATGGCCAGCATGAGGATATGTTGGAGGACCACATCAGCTCGGCCGAGATGGATGGCGTGCTTGAATCACTGACTTACGTCATACAAAAAGTCGGAGCCGAGCTAGCATGTAAGTGTTCAGGTGGAGATGCACATGCCTCAACTATGGCTATACTGAACTTACTGTCAAATTACTCATGGGATGCAAAAGTGGTGATCACAATGGCTGCCTTTGCTGTGAACTATGGACAGTATTGGCTTTTGGCTCAACTTTACACAACCAATATGCTAGCCAAGGCTCTGGCTCTGCTCAAGCAATTGCCTGATGTAATGGAGAATTCCAGTTCACTGAAACCTCAATTTGAGGCGCTTAACAAACTCGTCAAGGCTATGTTGGACGTAACGAAATGCATCGTTGAGTTCACCGAGTTGCCATCTCAATACATTTCGCAGGACACGCCTGCAATGTCAGTTGCCATAGCTCATTTTCCTACAGCTACATATTGGACCATCAAAAGTGCGGTGGCGTGCACGTCGCTGATTGAAAGCCTCGTCAGCTTGACTCATGAGCGGATTATGTCAACCACCGAAGTATGGGAACTTTCGAGCTTGGCTCACAAGGAAACGAATATATACGAGCATCTCCGGACTCAGCTGGATCTTTGCTTACAACACATAGATGGTAAGAAACATTTGGAGGCCTATCAGAATCTTGTGAGGATTTCAGAAACTCATCATCTAGACAACATGAAGTTCATCAGGGCCTTGATTTCTGCAAGAGATGACATACAGCCTCTCTATGATGGGACCTCGAAAACCACGGTTCACCTTGAAATATTGAAAAGGAAACATGTGTTGCTGTTGATCTCGGATCTTGATATCTCCCATGAAGAGGTTATGGTTCTAGACAACTTATTCAAAGAGTCACAACAACGACAGGAAATTCGATATGAGATAGTGTGGATTCCGATCATCGATCAATCGATCGAACAGCAAGGCAAGAATAAACACACGTTTAAGGAGGTGCAAATGATGATGCCATGGTTCAGTGTGCATGAGCCTTCAATAATTGAGCGCTCAGTCATAAGGTTCATCAAAGAAAAATGGAACTTCACAAAGAAGACAATCTTAGTAGCCTTAGATCCACAAGGAAAGGTGTCTTCCACCAATGCCCTTCACATGCTTTGGATATGGGGAAATCAAGCCTTCCCTTTCACATCAGAGAGGGAAGAAGCGCTCTGGAAAACAGAGAGCTGGAGACTCGAACTTCTCATAGATGGCATAGATTTATCTATTCTCGACTGGGCGGCAGAAGGAAGATACATTTGTCTATTTGGAGGGGAAGACATGGAATGGATCAAGGAGTTCACAATGAAAACAAAACAAGTAGCAGAAGAAGCAAAAGTAGACTTACAAATGGCGTATGTGGGGAAGAACAATGCGAAAGAACGCGTCAGGAAAATCACCATCATGATTGGAGAAAACAAGCTCAGCCATTACTGGCCAGATTCCACATTGATCTGGTTCTTCTGGGCAAGATTAGAGAGCATGATGTACTCAAAATTAAACCATGGAAGAACAGTTGAGAATGACCAAATAATGCAAGAGATTATGACCCTTTTGAGCTTCGATGGAAGTGACAAAGGGTGGGCCATTTTCTTCGGAAGAGGAGGGGAAATGACAAGAGCCAAAGGAGAAACTGCTCTTGGTTGCATATTGGCATACGAGGAGTGGAAAACAGAGGTGGAAGAGAAGGGATTTCTGACGGCGTTGGCTGAGTATCTGCAGCAACTTCGAACCCCACATCACTGCAACCGCCTGATTCTGCCGGGACTGGCCGGAAACATACCGGAAAACGTGGTGTGTGCAGAGTGTGGAAGGGCCATGGAAAAGTACCTGATGTACCGATGCTGCGTGGAATGA Protein sequence MASHTRPAPNMHKLIKNDRRMLSASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQHEDMLEDHISSAEMDGVLESLTYVIQKVGAELACKCSGGDAHASTMAILNLLSNYSWDAKVVITMAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSLKPQFEALNKLVKAMLDVTKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVACTSLIESLVSLTHERIMSTTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQNLVRISETHHLDNMKFIRALISARDDIQPLYDGTSKTTVHLEILKRKHVLLLISDLDISHEEVMVLDNLFKESQQRQEIRYEIVWIPIIDQSIEQQGKNKHTFKEVQMMMPWFSVHEPSIIERSVIRFIKEKWNFTKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWKTESWRLELLIDGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAYVGKNNAKERVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLNHGRTVENDQIMQEIMTLLSFDGSDKGWAIFFGRGGEMTRAKGETALGCILAYEEWKTEVEEKGFLTALAEYLQQLRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCCVE
Homology
BLAST of CmaCh11G000600 vs. ExPASy Swiss-Prot
Match: Q9SS87 (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1) HSP 1 Score: 560.1 bits (1442), Expect = 3.6e-158 Identity = 286/701 (40.80%), Postives = 441/701 (62.91%), Query Frame = 0 Query: 24 ASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQHEDML---- 83 +SD++ M K I TH+PD R V + +L +ED++ RAT LD + ML Sbjct: 37 SSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRAT------LDSEDTNASMLPLPT 96
Query: 84 EDHISSAEMDGVLESLTYVIQKVGAELACK-CSGGDAHASTMAILNLLSNYSWDAKVVIT 143 ED + + M VL+S++Y I +V E+A K +G D+H TM++ LS++ WD K+V+T Sbjct: 97 EDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLT 156
Query: 144 MAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSLKPQFEALNKLVKAMLDV 203 +AAFA+NYG++WLL Q Y+ N LAK+LA+LK +P ++N +L+ + LN L++ M V Sbjct: 157 LAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVP--VQNRVTLESVSQGLNDLIREMKSV 216
Query: 204 TKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVACTSLIESLVSLTHERIMS 263 T C+VE +ELP +YI+ D P +S ++ P A YWTI+S +AC S I + ++ HE + + Sbjct: 217 TACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHEMMNT 276
Query: 264 TTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQNLVRISETHHLDNMKFIR 323 ++WE S LA+K NI++HL L LC +HI+ ++ E+ + L + +T H+DNMK + Sbjct: 277 QMDLWETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTHIDNMKILT 336
Query: 324 ALISARDDIQPLYDGTSKTTVHLEILKRKHVLLLISDLDISHEEVMVLDNLFKESQQ--- 383 AL+ + I PL DG +K VHL++L+RK VLLLISDL+I +E+ + + ++ ES++ Sbjct: 337 ALVHPKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTESRRNLV 396
Query: 384 ----RQEIRYEIVWIPIID--QSIEQQGKNKHTFKEVQMMMPWFSVHEPSIIERSVIRFI 443 + + YE+VW+P++D + E+ + F++++ MPW+SV P +IER V+ F+ Sbjct: 397 GVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERHVVEFM 456
Query: 444 KEKWNFTKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWKTESWRLELLI 503 + +W+F K ILV +DPQG +S NALHM+WIWG +AFPFT REE LW+ E++ L L++ Sbjct: 457 RGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFSLNLIV 516
Query: 504 DGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAYVGKNN--AKE 563 DGID I +W YI L+GG+D++WI+ FTM K A+++ V+L+MAYVGK N +E Sbjct: 517 DGIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHRE 576
Query: 564 RVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLNHGRTVENDQIMQEIMTLLSF 623 ++R+I+ +I LSH W + L+WFFW RLESM+YSK+ G+ ++D +MQ I +LS+ Sbjct: 577 QIRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGIKKILSY 636
Query: 624 DGSDKGWAIFFGRGGEMTRAKGETALGCILAYEE-WKTEVEEKGFLTALA-----EYLQQ 683 D GWA+ +G E+ + Y+ WKT V KG+ A++ E L++ Sbjct: 637 DKLG-GWAL-LSKGPEIVMIAHGAIERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLRE 696
Query: 684 LRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCC 703 P + +G IPE + C EC R MEKY+ + CC Sbjct: 697 TGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCC 727
BLAST of CmaCh11G000600 vs. ExPASy Swiss-Prot
Match: Q93XX2 (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 SV=1) HSP 1 Score: 466.1 bits (1198), Expect = 7.1e-130 Identity = 263/716 (36.73%), Postives = 386/716 (53.91%), Query Frame = 0 Query: 16 KNDRRMLSASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQH 75 +N R M S SDD M ++L TH+PD D +L + D+ + P+I + Sbjct: 128 RNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVPSIDSSAPKPSLV 187
Query: 76 EDMLEDHISSAEMDGVLESLTYVIQKVGAELACKC-SGGDAH-------------ASTMA 135 DH S E+ +I ++ E+ CKC GG++H +T + Sbjct: 188 FKDYADHTS-------FETFADLIDQISCEIDCKCLHGGESHGMMTSGLHLDSRNTTTFS 247
Query: 136 ILNLLSNYSWDAKVVITMAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSL 195 +L+L+S Y WDAK+V+ ++A AV YG + LLA+ + TN L K+LAL+KQLP + ++L Sbjct: 248 VLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPSIFSRQNAL 307
Query: 196 KPQFEALNKLVKAMLDVTKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVAC 255 + + L++ M+D+T I++ +LP +I+ + H PTA YW ++ + C Sbjct: 308 HQRLDKTRILMQDMVDLTTTIIDIYQLPPNHIT------AAFTDHIPTAVYWIVRCVLIC 367
Query: 256 TSLIESLVSLTHERIMSTTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQN 315 S I ++IMS EV E+ + + I +L Q I+ E YQ Sbjct: 368 VSHISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSKMTIEEGIIEEEYQE 427
Query: 316 LVRISETHHLDNMKFIRALISARDDIQPLYD--GTSKTTVHLEILKRKHVLLLISDLDIS 375 L++ T + ++ + L+ I LY G SK V + +L +KHVLLLISDL+ Sbjct: 428 LIQTFTT--IIHVDVVPPLLRLLRPIDFLYHGAGVSKRRVGINVLTQKHVLLLISDLENI 487
Query: 376 HEEVMVLDNLFKESQQRQEIRYEIVWIPIIDQSIEQQGKNKHTFKEVQMMMPWFSVHEPS 435 +E+ +L++L+ E+ Q+ +EI+W+P+ D E F+ + M M W+ + EP Sbjct: 488 EKELYILESLYTEAWQQS---FEILWVPVQDFWTEADDAK---FEALHMNMRWYVLGEPR 547
Query: 436 IIERSVIRFIKEKWNFTKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWK 495 + R+ IRF++E W F + ILVALDP+G+V STNA M+WIW A PFT+ RE LW Sbjct: 548 KLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHPFTTARERDLWS 607
Query: 496 TESWRLELLIDGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAY 555 + W LE LIDG D L+ +G+YICL+GGEDM+WIK FT + VA+ A + L+M Y Sbjct: 608 EQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVAKAANIQLEMVY 667
Query: 556 VGKNNAKERVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLN----HG------ 615 VGK N K ++ I I E LSH PD IWFFW R+ESM SK HG Sbjct: 668 VGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQRMLKAHGIKGREG 727
Query: 616 -RTVENDQIMQEIMTLLSFDGSDKGWAIFFGRGGEMTRAKGETALGCILAYEEWKTEVEE 675 + E D ++QE++ +L + G GW + M RAKG + + EW+ + Sbjct: 728 FKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPT 787
Query: 676 KGFLTALAEYLQQLRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCCVE 705 KGFLTAL ++L PHHC R +LP AG IP V C EC R MEKY +Y+CC+E Sbjct: 788 KGFLTALNDHLLMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCCLE 822
BLAST of CmaCh11G000600 vs. ExPASy Swiss-Prot
Match: Q9FXE2 (Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2) HSP 1 Score: 284.6 bits (727), Expect = 2.9e-75 Identity = 199/699 (28.47%), Postives = 337/699 (48.21%), Query Frame = 0 Query: 17 NDRRMLSASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQHE 76 N RR +SA +++ + +Q+L +H PDGR +D + +L +E + + VL + Sbjct: 2 NFRRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETI-------LSFVLQNDVSRP 61
Query: 77 DMLEDHISSAEMDGVLESLTYVIQKVGAELACKCSG-GDAHASTMAILNLLSNYSWDAKV 136 + E+ I++ E+ E+L Y I ++ ++ C C+G + TM + +LL Y WDAK Sbjct: 62 LLTENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKA 121
Query: 137 VITMAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSLKPQFEALNKLVKAM 196 V+ + A YG L L + +A ++A L QLP + +P E+LN L+KAM Sbjct: 122 VLVLGVLAATYGGLLLPVHLAICDPVAASIAKLNQLP---IERTKFRPWLESLNLLIKAM 181
Query: 197 LDVTKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVACTSLI---------- 256 +DVTKCI++F ++P + D + +++ TY +KSA+ C I Sbjct: 182 VDVTKCIIKFEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQAK 241
Query: 257 ESLVSLTHERIMSTTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQNLVRI 316 +S + I S ELSSL ++ NI+ L Q++ C I+ E Q L I Sbjct: 242 KSRKTAAELSIESRRAAGELSSLGYQLLNIHTRLNKQVEDCSTQIEE----EINQRLRNI 301
Query: 317 SETHHLDNMKFIRALISARDDIQPLYDGTSKTTVHLEILKRKHVLLLISDLDISHEEVMV 376 + H DN + L S +DD+ PL + + + + ++ K LLL+S + ++ Sbjct: 302 NIETHQDNQDVLHLLFSLQDDL-PLQQYSRQ--ISITEVQDKVTLLLLSKPPVEPLFFLL 361
Query: 377 LDNLFKESQQRQEIRYEIVWIPIIDQSIEQQGKNKHTFKEVQMMMPWFSVHEPSIIERSV 436 S E YEI+W+P I S + + K F +PW SV +P ++ ++ Sbjct: 362 QQLYDHPSNTNTEQNYEIIWVP-IPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTI 421
Query: 437 IRFIKEKWNF-TKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWKTESWR 496 + F K++W++ + +LV +D G+ + NA+ M+ IWG +A+PF+ RE+ LWK W Sbjct: 422 LNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWS 481
Query: 497 LELLIDGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAYVGKNN 556 + LL+DGI + EGR IC+FG E+++WI EF +++ + L++ Y+ Sbjct: 482 INLLLDGIHPTF-----EGREICIFGSENLDWIDEFVSLARKI-QNLGFQLELIYLSNQR 541
Query: 557 AKERVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLNH--GRTVENDQIMQEIM 616 ER + + ++ TL FW RLES+ SKL + D++ +E+ Sbjct: 542 RDERAMEESSILF---------SPTLQQLFWLRLESIERSKLKRIVIEPSKPDRVFEEVR 601
Query: 617 TLLSFD-GSDKGWAIFFGRGGEMTRAKGETALGCILAYEEWKTEVEEKGFLTALAEYLQQ 676 LL FD G +GW I G G GE + W + GF A+ ++ Sbjct: 602 NLLDFDYGKHRGWGI-IGNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEK 661
Query: 677 LRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYR 701 H ++P + V C +C M++++ Y+ Sbjct: 662 PCELSH--TAVVPFEEALTMKVVTCEKCKWPMKRFVAYQ 664
BLAST of CmaCh11G000600 vs. TAIR 10
Match: AT3G01680.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 560.1 bits (1442), Expect = 2.6e-159 Identity = 286/701 (40.80%), Postives = 441/701 (62.91%), Query Frame = 0 Query: 24 ASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQHEDML---- 83 +SD++ M K I TH+PD R V + +L +ED++ RAT LD + ML Sbjct: 37 SSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRAT------LDSEDTNASMLPLPT 96
Query: 84 EDHISSAEMDGVLESLTYVIQKVGAELACK-CSGGDAHASTMAILNLLSNYSWDAKVVIT 143 ED + + M VL+S++Y I +V E+A K +G D+H TM++ LS++ WD K+V+T Sbjct: 97 EDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLT 156
Query: 144 MAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSLKPQFEALNKLVKAMLDV 203 +AAFA+NYG++WLL Q Y+ N LAK+LA+LK +P ++N +L+ + LN L++ M V Sbjct: 157 LAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVP--VQNRVTLESVSQGLNDLIREMKSV 216
Query: 204 TKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVACTSLIESLVSLTHERIMS 263 T C+VE +ELP +YI+ D P +S ++ P A YWTI+S +AC S I + ++ HE + + Sbjct: 217 TACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHEMMNT 276
Query: 264 TTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQNLVRISETHHLDNMKFIR 323 ++WE S LA+K NI++HL L LC +HI+ ++ E+ + L + +T H+DNMK + Sbjct: 277 QMDLWETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTHIDNMKILT 336
Query: 324 ALISARDDIQPLYDGTSKTTVHLEILKRKHVLLLISDLDISHEEVMVLDNLFKESQQ--- 383 AL+ + I PL DG +K VHL++L+RK VLLLISDL+I +E+ + + ++ ES++ Sbjct: 337 ALVHPKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTESRRNLV 396
Query: 384 ----RQEIRYEIVWIPIID--QSIEQQGKNKHTFKEVQMMMPWFSVHEPSIIERSVIRFI 443 + + YE+VW+P++D + E+ + F++++ MPW+SV P +IER V+ F+ Sbjct: 397 GVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERHVVEFM 456
Query: 444 KEKWNFTKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWKTESWRLELLI 503 + +W+F K ILV +DPQG +S NALHM+WIWG +AFPFT REE LW+ E++ L L++ Sbjct: 457 RGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFSLNLIV 516
Query: 504 DGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAYVGKNN--AKE 563 DGID I +W YI L+GG+D++WI+ FTM K A+++ V+L+MAYVGK N +E Sbjct: 517 DGIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHRE 576
Query: 564 RVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLNHGRTVENDQIMQEIMTLLSF 623 ++R+I+ +I LSH W + L+WFFW RLESM+YSK+ G+ ++D +MQ I +LS+ Sbjct: 577 QIRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGIKKILSY 636
Query: 624 DGSDKGWAIFFGRGGEMTRAKGETALGCILAYEE-WKTEVEEKGFLTALA-----EYLQQ 683 D GWA+ +G E+ + Y+ WKT V KG+ A++ E L++ Sbjct: 637 DKLG-GWAL-LSKGPEIVMIAHGAIERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLRE 696
Query: 684 LRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCC 703 P + +G IPE + C EC R MEKY+ + CC Sbjct: 697 TGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCC 727
BLAST of CmaCh11G000600 vs. TAIR 10
Match: AT3G01670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 466.1 bits (1198), Expect = 5.1e-131 Identity = 263/716 (36.73%), Postives = 386/716 (53.91%), Query Frame = 0 Query: 16 KNDRRMLSASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQH 75 +N R M S SDD M ++L TH+PD D +L + D+ + P+I + Sbjct: 128 RNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVPSIDSSAPKPSLV 187
Query: 76 EDMLEDHISSAEMDGVLESLTYVIQKVGAELACKC-SGGDAH-------------ASTMA 135 DH S E+ +I ++ E+ CKC GG++H +T + Sbjct: 188 FKDYADHTS-------FETFADLIDQISCEIDCKCLHGGESHGMMTSGLHLDSRNTTTFS 247
Query: 136 ILNLLSNYSWDAKVVITMAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSL 195 +L+L+S Y WDAK+V+ ++A AV YG + LLA+ + TN L K+LAL+KQLP + ++L Sbjct: 248 VLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPSIFSRQNAL 307
Query: 196 KPQFEALNKLVKAMLDVTKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVAC 255 + + L++ M+D+T I++ +LP +I+ + H PTA YW ++ + C Sbjct: 308 HQRLDKTRILMQDMVDLTTTIIDIYQLPPNHIT------AAFTDHIPTAVYWIVRCVLIC 367
Query: 256 TSLIESLVSLTHERIMSTTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQN 315 S I ++IMS EV E+ + + I +L Q I+ E YQ Sbjct: 368 VSHISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSKMTIEEGIIEEEYQE 427
Query: 316 LVRISETHHLDNMKFIRALISARDDIQPLYD--GTSKTTVHLEILKRKHVLLLISDLDIS 375 L++ T + ++ + L+ I LY G SK V + +L +KHVLLLISDL+ Sbjct: 428 LIQTFTT--IIHVDVVPPLLRLLRPIDFLYHGAGVSKRRVGINVLTQKHVLLLISDLENI 487
Query: 376 HEEVMVLDNLFKESQQRQEIRYEIVWIPIIDQSIEQQGKNKHTFKEVQMMMPWFSVHEPS 435 +E+ +L++L+ E+ Q+ +EI+W+P+ D E F+ + M M W+ + EP Sbjct: 488 EKELYILESLYTEAWQQS---FEILWVPVQDFWTEADDAK---FEALHMNMRWYVLGEPR 547
Query: 436 IIERSVIRFIKEKWNFTKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWK 495 + R+ IRF++E W F + ILVALDP+G+V STNA M+WIW A PFT+ RE LW Sbjct: 548 KLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHPFTTARERDLWS 607
Query: 496 TESWRLELLIDGIDLSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAY 555 + W LE LIDG D L+ +G+YICL+GGEDM+WIK FT + VA+ A + L+M Y Sbjct: 608 EQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVAKAANIQLEMVY 667
Query: 556 VGKNNAKERVRKITIMIGENKLSHYWPDSTLIWFFWARLESMMYSKLN----HG------ 615 VGK N K ++ I I E LSH PD IWFFW R+ESM SK HG Sbjct: 668 VGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQRMLKAHGIKGREG 727
Query: 616 -RTVENDQIMQEIMTLLSFDGSDKGWAIFFGRGGEMTRAKGETALGCILAYEEWKTEVEE 675 + E D ++QE++ +L + G GW + M RAKG + + EW+ + Sbjct: 728 FKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPT 787
Query: 676 KGFLTALAEYLQQLRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCCVE 705 KGFLTAL ++L PHHC R +LP AG IP V C EC R MEKY +Y+CC+E Sbjct: 788 KGFLTALNDHLLMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCCLE 822
BLAST of CmaCh11G000600 vs. TAIR 10
Match: AT1G67790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 239.6 bits (610), Expect = 7.7e-63 Identity = 176/690 (25.51%), Postives = 307/690 (44.49%), Query Frame = 0 Query: 17 NDRRMLSASDDNAMTKQILATHAPDGRMVDFKPILFTIEDVIRRATPAIGNVLDGNGQHE 76 N RR +SA +++ + +Q+L +H PDGR +D + +L +E + + VL + Sbjct: 2 NFRRDISALNEDIIVEQLLRSHDPDGRWLDSEMLLQEVETI-------LSFVLQNDVSRP 61
Query: 77 DMLEDHISSAEMDGVLESLTYVIQKVGAELACKCSG-GDAHASTMAILNLLSNYSWDAKV 136 + E+ I++ E+ E+L Y I ++ ++ C C+G + TM + +LL Y WDAK Sbjct: 62 LLTENCITTIEVFDSKETLPYAIFRISVQMLCPCTGENEIRKRTMVLFDLLKEYRWDAKA 121
Query: 137 VITMAAFAVNYGQYWLLAQLYTTNMLAKALALLKQLPDVMENSSSLKPQFEALNKLVKAM 196 V+ + A YG L L + +A ++A L QLP + +P E+LN L+KAM Sbjct: 122 VLVLGVLAATYGGLLLPVHLAICDPVAASIAKLNQLP---IERTKFRPWLESLNLLIKAM 181
Query: 197 LDVTKCIVEFTELPSQYISQDTPAMSVAIAHFPTATYWTIKSAVACTSLIESLVSLTHER 256 +DVTKCI++F ++P + D + +++ TY +KSA+ C ++ + + Sbjct: 182 VDVTKCIIKFEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTC---MQQIPYFKQTQ 241
Query: 257 IMSTTEVWELSSLAHKETNIYEHLRTQLDLCLQHIDGKKHLEAYQNLVRISETHHLDNMK 316 +S TEV + +L Sbjct: 242 QISITEVQDKVTL----------------------------------------------- 301
Query: 317 FIRALISARDDIQPLYDGTSKTTVHLEILKRKHVLLLISDLDISHEEVMVLDNLFKE-SQ 376 L+ ++ ++PL+ +L L+ S Sbjct: 302 ----LLLSKPPVEPLF--------------------------------FLLQQLYDHPSN 361
Query: 377 QRQEIRYEIVWIPIIDQSIEQQGKNKHTFKEVQMMMPWFSVHEPSIIERSVIRFIKEKWN 436 E YEI+W+P I S + + K F +PW SV +P ++ +++ F K++W+ Sbjct: 362 TNTEQNYEIIWVP-IPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSSTILNFFKQEWH 421
Query: 437 F-TKKTILVALDPQGKVSSTNALHMLWIWGNQAFPFTSEREEALWKTESWRLELLIDGID 496 + + +LV +D G+ + NA+ M+ IWG +A+PF+ RE+ LWK W + LL+DGI Sbjct: 422 YKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGWSINLLLDGIH 481
Query: 497 LSILDWAAEGRYICLFGGEDMEWIKEFTMKTKQVAEEAKVDLQMAYVGKNNAKERVRKIT 556 + EGR IC+FG E+++WI EF +++ + L++ Y+ ER + + Sbjct: 482 PTF-----EGREICIFGSENLDWIDEFVSLARKI-QNLGFQLELIYLSNQRRDERAMEES 541
Query: 557 IMIGENKLSHYWPDSTLIWFFWARLESMMYSKLNH--GRTVENDQIMQEIMTLLSFD-GS 616 ++ TL FW RLES+ SKL + D++ +E+ LL FD G Sbjct: 542 SILF---------SPTLQQLFWLRLESIERSKLKRIVIEPSKPDRVFEEVRNLLDFDYGK 576
Query: 617 DKGWAIFFGRGGEMTRAKGETALGCILAYEEWKTEVEEKGFLTALAEYLQQLRTPHHCNR 676 +GW I G G GE + W + GF A+ ++ H Sbjct: 602 HRGWGI-IGNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSH--T 576
Query: 677 LILPGLAGNIPENVVCAECGRAMEKYLMYR 701 ++P + V C +C M++++ Y+ Sbjct: 662 AVVPFEEALTMKVVTCEKCKWPMKRFVAYQ 576
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SS87 | 3.6e-158 | 40.80 | Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 S... | [more] |
Q93XX2 | 7.1e-130 | 36.73 | Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 S... | [more] |
Q9FXE2 | 2.9e-75 | 28.47 | Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
AT3G01680.1 | 2.6e-159 | 40.80 | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640);... | [more] |
AT3G01670.1 | 5.1e-131 | 36.73 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT1G67790.1 | 7.7e-63 | 25.51 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR027942 | Sieve element occlusion, N-terminal | PFAM | PF14576 | SEO_N | coord: 25..310 e-value: 6.3E-119 score: 396.4 |
IPR027944 | Sieve element occlusion, C-terminal | PFAM | PF14577 | SEO_C | coord: 472..702 e-value: 2.4E-101 score: 338.0 |
IPR039299 | Protein SIEVE ELEMENT OCCLUSION | PANTHER | PTHR33232 | PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE | coord: 8..703 |
None | No IPR available | PANTHER | PTHR33232:SF20 | PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE | coord: 8..703 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0010088 |
phloem development |
|