CmaCh10G010860 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G010860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
LocationCma_Chr10: 7157095 .. 7161484 (+)
RNA-Seq ExpressionCmaCh10G010860
SyntenyCmaCh10G010860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACTGAGTCTAACCTGGGAGGACATCGAGATTGGAATTCTGAAAATCATAATGAAATTCTATGGGTGCTTGTCCCTATTTTGACAACTGTATTAGGAATCACAATCGACGTACCAGTAATTGTATGGTTAGAAAGAGAAATATACGCATACAACAACGGATTGGACCTGAATATGCTGGTCCTTTGCGAGTTCTTCAAGTTTTAGCCGATGGTACAAAACGACTTTTGTTAAAGATCACGTGTTTGTTTAGATTGTTGTCAATTAGTATCTAATTAAATCTTAGGAGTTGATTTACTTTGATTTGATTTGATTTTGTTTTGATTTGATTTACTCGTTTGTTACCAAATTTTCAACGATTTTTAGGTAGATTTTGTAAATATTTTTTTGTATTCTCTGTATATATATAAAGCATTCTTGCTCTACATAATATAATCTTCTTATTACCATTCAATCACTCACTCTTTCACTAACAATTGACATTAGAGCTATCTTATTAAGTGATCTGTGAGATCAAAATGGGAGGAGAATCCAGTTTTTCAGTTGTTGCACCACCAATCTTCAATGGAGAAAATAATCAAATGTGGGCAATTCGTATAGAGACTTATCTGGAGACTTTGGATCTTTGGGAAGCAATAGAGGAGAATTACGAGGTCCCTCCGCTTCCAACAAATTCTATTGTAGCACAAATCAAAGTACACAAGGAAAAGAAGACAAGGAAATCAAAGGCAAAAACTTGCCTATTTGCCGCTGTATCTCAAATGATCTTCATACGAATAATGTCCCTCAAAACAGCAAAGGAAATCTAGGATTATCTCAAGGCTGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAGTTCTGAATTTGATTAGGAATTTTGAGTTTCAGAAGATGAAAGAGTCGGAGTCGGTGAAAAAATACTCTGACAGACTTCTCAACATTGCCAACAAGGTGAAATTGCTTGGTTCTGTGTTAAATGATTCCAGGATCATTGAAAAGCTACTAGTCACTGTTCCGGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCATAAGAGCAAAGAGGTCTATGAGGCAAGAAGGGGTGATTAAAGGCACCTTACATGTCAAGCATCAAGACAATAGTAGGTATAAAAATAAGAAAAATTCAAAAACCAATCGACGAATCGAGATTCATCTGCCAATTATCATAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACGTTGCCGCCATTGTGAGAAGAAAGATCATCCACCATACAAGTGTTGGAGAAGACCTGATGCCTTCTGCTCCAAATGCAATCAACTTGGACATAAAGCTGTGATCTGCAAAGCCAAAGATCAGGTGAAAGAAGTAGATGCATAGGTAGTTGATCAAGAAGAAGAAGAAAATCAATTGTTTATGGTCACTTCTTCCTCAGGCAAAGAATCAAGCAAGAGCTAGTTGATTGACAGTGGGTGCACAAATCATATGACATATGACAATGAGTATTTTGAGGATTTAAGAGACACTGAAGTCAAGAGAGTGAGGATTGGCAATGGTGAACACTTGGAAATCAAAGGAAAAGGCACAGTAGCTATAACAAGTTATGAAGGTACAAAATTTATTCCATATGTTTTATTTGTACCTAAAATTGATCAAAATCTCAAGTGTTGGTCAGTTACTTGATAAAGGCTATAAAGTGTTGTTTGAGAATAAGCCGTGCTTGATCAAAGATGCTAGTGGCAAAGACTTGTTCAATGTCAAAATGGAAGGAAAAATCTTTGCTCTAAATTCGATGGAGAAAGAGCAGATGACCTTTATATCTAGAACTAGTGCCACTGAGATTTGGCACAAAAGACGTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCTGGTAGAAGAACTCGCTGACATTAATGATGACATGCCTCCTTGTCGTACTTGTAATGTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGGCATGGAGAGCCTCGAAAAAAAATGTAGCTGGTTCATACTGATCTTTGTGGTTCTCAGTGAACACCATCATTAAATGATAATCTTTATTACATTATTTTTATTGATGATCTAACAAGAATGTGTTGGATCTTCTTGCTGGAGCAAAAGTCAGAAGTTGCAGGTGTATTTTGGAAATTCAAAGTCAGAGTTGAGAATGAAAGTGCATGCTTGATTCAAACTATAAGATTAGATTATGGCAAGAACTACACTTCAGAAACTTTTAACAGGTTTTGTGAAGAGGTTGGAATTGAACATCAATTGACAACACCATATACTCCTCAACAGAATGACGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACAAGATGCATGCTTCATGAGAAGGATCTTCCAAAACGTTTTTGGGGAAAAGCAGTAAACACTGTTGTGTGCTTGCAAAATCGAATTTCAACAAAAGTTGTGAAGGACATCACACCATTTGAAGTTTGGCATGGTTACAAACCTTCTTTAAAGTTCCTTGGAATATTTGGGTGTCTTTACTTCACTTACATTCCATAGGTCAAGCATGATAAGCTTGACAAAAAGCAGAAGATGACATCTTTGTTGGGTATAGCACTATATCCAAAGCTTACAGAGTTTTTCAACCACACACTAGTCATGTTATTGTGAGCCAAGATGTTCTTTTTGCTGGAAATGAGCAATGGAATTGGGAAGAACTGAAAAATGTGAATAAGATTTCTAATACACCAAACAATTTAATCTTTGGTAGCAAGTTAGAAGAGTTTGAAGATGAACAACTAGAAGAGTTTGAAGATGAACGACAAGAAGAGTTTGAAGATGAAAGACAAGATGATTTGGTTGATGATGCACCTATCAGAGGAGGAGCTTTGAGTGATCGAGAAATACAAAACCTAGGAGTTGGTTGATCGACCTCTAAACAGAAAGATAATTGGAGTAAGATGAGTGTTTAGAAAAAAGCTTGGAGTTCACAACATCTAAACAAGGAGTGTTAAAGATCACGTGTTTGTTTAGATTGTTGTCAATTAGTATCTAACTAATTAAATCTTATAAGTTGATTTACTTCTGTTTTGATTTGATTTAATTTTGTTTTAATTTACTGATTTGTTACCAAATTTTCACCAGATTTTTAGGTAGATTTTCTAAATATCTTTTTGTATTCTCTGTATATATAGAGCATTCTTGCTCTTCATAATATAATCTTCTTATTAACCATTCAATCACTCACTCTCTCACTAACAACGTTTTAAAGAAAATTTACTTCCATCTAGAGGTATACACGTTTATTCAGTATTGGACCATCCATCCATAGCAGTCATATCCATTTTACTAAGCTATTCAGTAATTCCTTTTGTCGCCTTATTTTAGCAGATCTGCATAGGTGTTTTTTTTTATGGATTTCCATTTCAAGTCTTGCTCCCATCGGACCATTCAATCACTCACTCTTTCACTAACAACTTTTTAAAGAAAATCAGCTTCCATCTAGAGGTATACACGTTTATTCAGTATCGGACCATCTATCCTAGCAGTCATATCCATTTTACTAAGCTATTCAGTAATTCCTTGTCACCTTATTTTAGCAGATCTACATAGGTGTTTTTTTTATGGATTTCCATTTCAAGTCTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAAGAAATATTCCTTTTTAGGTGGTCTACGAGCTACTGTTCCATCAATTAGTTATGAAATATCATTAACTCTGTGTATTATCAATATATGTACGTGTGATTCGTTGAGACATAAACTTCTCCCACTTTGTTGTTGTTGAGAAAAGGGGTGATGAATAGATATCTTCATTTTGATATTCATTATTCGAATTAATGAACTAAATCAAATAGTTATAGAGTGAAAGAAAACAGCTTATATAAAGTAAAATTAGCAGTCAAAATATTGAGTCTCATTTTTATGTATAAAAGAGTTAAGCAAAAAATAAAGATAGGGGCAAGAGAGCATTTATCCCAACCAAGATTAGTTGACTAGTTATCCTATCTTGAAGCGGACTCAAAAGATCAATTGGATTGAGTTTTCACTATTATTTGAATGTATTACCATATATCTATTATCATAACACGACCCATTGAGCAAAAATGAGTGGATGGTTAGAAAGACCAAGATATACAAAGGATTTGTAATGGAGATTTTCTAAATTATCCAAAGGAGAGAGGACATTTTTCCAAAATGCATAATAGGAAAAGAATAGGAATCAGGGCTTTAAGTTTGTAGAAATGATCAGGCAGTACTCCCCACCATCCCGATCCAGAGTATGGACCTATCCACCCATTAA

mRNA sequence

GATACTGAGTCTAACCTGGGAGGACATCGAGATTGGAATTCTGAAAATCATAATGAAATTCTATGGGTGCTTGTCCCTATTTTGACAACTGTATTAGGAATCACAATCGACGTACCAGTGTTTTTTTTATGGATTTCCATTTCAAGTCTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAAGAAATATTCCTTTTTAGGTGGTCTACGAGCTACTGTTCCATCAATTAGTTATGAAATATCATTAACTCTGTGTATTATCAATATATGTACAAATGATCAGGCAGTACTCCCCACCATCCCGATCCAGAGTATGGACCTATCCACCCATTAA

Coding sequence (CDS)

GATACTGAGTCTAACCTGGGAGGACATCGAGATTGGAATTCTGAAAATCATAATGAAATTCTATGGGTGCTTGTCCCTATTTTGACAACTGTATTAGGAATCACAATCGACGTACCAGTGTTTTTTTTATGGATTTCCATTTCAAGTCTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAAGAAATATTCCTTTTTAGGTGGTCTACGAGCTACTGTTCCATCAATTAGTTATGAAATATCATTAACTCTGTGTATTATCAATATATGTACAAATGATCAGGCAGTACTCCCCACCATCCCGATCCAGAGTATGGACCTATCCACCCATTAA

Protein sequence

DTESNLGGHRDWNSENHNEILWVLVPILTTVLGITIDVPVFFLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINICTNDQAVLPTIPIQSMDLSTH
Homology
[Close]
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match: Q9MUL1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride OX=41882 GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-16
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 22  WVLVPILTTVLGITIDVPVFFLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISY 81
           +++VP    ++   I++ +FF WI++SS+AP+GLLMSGYGSN KYSFLGGLRAT  S+SY
Sbjct: 114 YLIVPFGENLIVSNINLGIFF-WITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQSLSY 173

Query: 82  EISLTLCIINIC 94
           EI L LC+++IC
Sbjct: 174 EIPLALCVLSIC 184

[Close]
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match: Q06FP9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum OX=4031 GN=ndhA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-16
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCI--INICTNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+  I++ +N  + 
Sbjct: 132 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSST 191

Query: 102 LPTIPIQS 108
           +  I  QS
Sbjct: 192 VDIIEAQS 199

[Close]
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCI--INICTNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+  I++ +N  + 
Sbjct: 132 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSST 191

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 192 VDIVEAQS 199

[Close]
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 34  ITIDVPV-FFLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCI--I 93
           +  D+P+  FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+  I
Sbjct: 123 VLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182

Query: 94  NICTNDQAVLPTIPIQS 108
           ++ +N  + +  +  QS
Sbjct: 183 SLLSNSSSTVDIVEAQS 199

[Close]
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match: Q14FA3 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba OX=43335 GN=ndhA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCI--INICTNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+  I++ +N  + 
Sbjct: 132 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSST 191

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 192 VDIVEAQS 199

[Close]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match: A0A7J6EKW2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_017246 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 20  ILWVLVPILTTVLGITIDVPV------------FFLWISISSLAPIGLLMSGYGSNKKYS 79
           I+W+L+P  T VLGITI VP              FLWI+ISS+APIGLLMSGYGSN KYS
Sbjct: 26  IIWILIPTFTLVLGITIVVPFGSHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYS 85

Query: 80  FLGGLRATVPSISYEISLTLCIINI 93
           FLGGLRA   SISYEI LTLC+++I
Sbjct: 86  FLGGLRAAAQSISYEIPLTLCVLSI 110

[Close]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match: A0A251RRE6 (Putative NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0557741 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 20  ILWVLVPILTTVLGITIDVPVF---------------------FLWISISSLAPIGLLMS 79
           I+WVL+PI T VLGITI V V                      FLWI+ISS+AP+GLLMS
Sbjct: 26  IIWVLIPIFTPVLGITIGVLVIVWLEREISGYTTTYRDLSIGVFLWIAISSIAPVGLLMS 85

Query: 80  GYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           GYGSN KYSFLGGLRA   SISYEI LTLC+++I
Sbjct: 86  GYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 119

[Close]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match: A0A7J6GWI2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016706 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-16
Identity = 54/101 (53.47%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 20  ILWVLVPILTTVLGITIDV----------PV------------------FFLWISISSLA 79
           I+W+L+P  T VLGITI V          P+                   FLWI+ISS+A
Sbjct: 26  IIWILIPTFTLVLGITIGVLRRYSFIQYWPIHSIVPFGSHLVLADLNIGVFLWIAISSIA 85

Query: 80  PIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           PIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++I
Sbjct: 86  PIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 126

[Close]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match: A0A6M3RVV4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes rosthornii OX=676073 GN=ndhA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINICTNDQAVLP 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++I +N  + + 
Sbjct: 132 FLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSILSNSSSTVD 191

Query: 102 TIPIQS 108
            +  QS
Sbjct: 192 IVEAQS 197

[Close]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match: A0A4P8Y4G0 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Glochidion chodoense OX=2583285 GN=ndhA PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINIC--TNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++IC  +N  + 
Sbjct: 136 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSICLLSNSLST 195

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 196 VDIVEAQS 203

[Close]
BLAST of CmaCh10G010860 vs. NCBI nr
Match: KAF4358369.1 (hypothetical protein G4B88_017246 [Cannabis sativa])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 20  ILWVLVPILTTVLGITIDVPV------------FFLWISISSLAPIGLLMSGYGSNKKYS 79
           I+W+L+P  T VLGITI VP              FLWI+ISS+APIGLLMSGYGSN KYS
Sbjct: 26  IIWILIPTFTLVLGITIVVPFGSHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYS 85

Query: 80  FLGGLRATVPSISYEISLTLCIINI 93
           FLGGLRA   SISYEI LTLC+++I
Sbjct: 86  FLGGLRAAAQSISYEIPLTLCVLSI 110

[Close]
BLAST of CmaCh10G010860 vs. NCBI nr
Match: KAF4387297.1 (hypothetical protein F8388_016706 [Cannabis sativa])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 54/101 (53.47%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 20  ILWVLVPILTTVLGITIDV----------PV------------------FFLWISISSLA 79
           I+W+L+P  T VLGITI V          P+                   FLWI+ISS+A
Sbjct: 26  IIWILIPTFTLVLGITIGVLRRYSFIQYWPIHSIVPFGSHLVLADLNIGVFLWIAISSIA 85

Query: 80  PIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           PIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++I
Sbjct: 86  PIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 126

[Close]
BLAST of CmaCh10G010860 vs. NCBI nr
Match: QJD26700.1 (NdhA [Trichosanthes rosthornii])

HSP 1 Score: 90.9 bits (224), Expect = 7.6e-15
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINICTNDQAVLP 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++I +N  + + 
Sbjct: 132 FLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSILSNSSSTVD 191

Query: 102 TIPIQS 108
            +  QS
Sbjct: 192 IVEAQS 197

[Close]
BLAST of CmaCh10G010860 vs. NCBI nr
Match: YP_009776877.1 (NADH dehydrogenase subunit 1 [Phyllanthus emblica] >QJA27531.1 NADH dehydrogenase subunit 1 [Phyllanthus emblica])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINIC--TNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++IC  +N  + 
Sbjct: 136 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSICLLSNSLST 195

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 196 VDIVEAQS 203

[Close]
BLAST of CmaCh10G010860 vs. NCBI nr
Match: DAZ85482.1 (TPA: NADH dehydrogenase ND1 subunit [Flueggea virosa])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINIC--TNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+++IC  +N  + 
Sbjct: 138 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSICLLSNSLST 197

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 198 VDIVETQS 205

[Close]
BLAST of CmaCh10G010860 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-17
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 42  FLWISISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCI--INICTNDQAV 101
           FLWI+ISS+APIGLLMSGYGSN KYSFLGGLRA   SISYEI LTLC+  I++ +N  + 
Sbjct: 132 FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLST 191

Query: 102 LPTIPIQS 108
           +  +  QS
Sbjct: 192 VDIVEAQS 199

[Close]
BLAST of CmaCh10G010860 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 46  SISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           +ISSL   G++++G  SN KY+FLG LR+    +SYE+S+ L +I +
Sbjct: 112 AISSLGVYGIIIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITV 158

[Close]
BLAST of CmaCh10G010860 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 46  SISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           +ISSL   G++++G  SN KY+FLG LR+    +SYE+S+ L +I +
Sbjct: 112 AISSLGVYGIIIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITV 158

[Close]
BLAST of CmaCh10G010860 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 46  SISSLAPIGLLMSGYGSNKKYSFLGGLRATVPSISYEISLTLCIINI 93
           +ISSL   G++++G  SN KY+FLG LR+    +SYE+S+ L +I +
Sbjct: 112 AISSLGVYGIIIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITV 158

The following BLAST results are available for this feature:
BLAST of CmaCh10G010860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9MUL11.4e-1658.33NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride OX=... [more]
Q06FP91.9e-1666.18NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum ... [more]
A0A3902.5e-1664.71NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134... [more]
Q2QD362.5e-1659.74NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36... [more]
Q14FA32.5e-1664.71NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba OX=43335... [more]
BLAST of CmaCh10G010860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6EKW22.1e-1863.53Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_017246 PE=3 SV=1[more]
A0A251RRE61.0e-1758.51Putative NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit... [more]
A0A7J6GWI25.7e-1653.47Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016706 PE=3 SV=1[more]
A0A6M3RVV43.7e-1566.67NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes rosthor... [more]
A0A4P8Y4G01.1e-1466.18NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Glochidion chodoense ... [more]
BLAST of CmaCh10G010860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4358369.14.3e-1863.53hypothetical protein G4B88_017246 [Cannabis sativa][more]
KAF4387297.11.2e-1553.47hypothetical protein F8388_016706 [Cannabis sativa][more]
QJD26700.17.6e-1566.67NdhA [Trichosanthes rosthornii][more]
YP_009776877.12.2e-1466.18NADH dehydrogenase subunit 1 [Phyllanthus emblica] >QJA27531.1 NADH dehydrogenas... [more]
DAZ85482.12.2e-1466.18TPA: NADH dehydrogenase ND1 subunit [Flueggea virosa][more]
BLAST of CmaCh10G010860 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01100.13.0e-1764.71NADH dehydrogenase family protein [more]
ATMG01120.16.9e-0644.68NADH dehydrogenase 1B [more]
ATMG00516.16.9e-0644.68NADH dehydrogenase 1C [more]
ATMG01275.16.9e-0644.68NADH dehydrogenase 1A [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 21..94
e-value: 6.8E-15
score: 55.2
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 41..94
NoneNo IPR availablePANTHERPTHR11432:SF3NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1coord: 41..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G010860.1CmaCh10G010860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016020 membrane
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0048038 quinone binding