CmaCh10G009720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G009720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	lamin-like protein
Location	Cma_Chr10: 5017638 .. 5018223 (-)
RNA-Seq Expression	CmaCh10G009720
Synteny	CmaCh10G009720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTGTAAGTTCTTCATTTAAGAAAGTTGTTTTTCTCCGTTTCTAATATTTTCTTTAACAATTTTTAGATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG

mRNA sequence

ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG

Coding sequence (CDS)

ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG

Protein sequence

MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN

Homology

[Close]

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-24
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 8   VATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLY 67
           +A  T ++  V +A  +   + G     + VG  K+ W  NIN+T W+  +HFY+GDWLY
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKF-WNPNINYTIWAQGKHFYLGDWLY 60

Query: 68  FGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRG-GRDVFNLTQAKPYYFLSGRGFCFQGM 127
           F FD+  +N+L+VNKT Y+ C  +  + N TRG GRD+  L Q K YY L G+G C+ GM
Sbjct: 61  FVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGM 120

Query: 128 KVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIA 167
           K+++ VE  PP   PK A       P+K + S+S+   +A
Sbjct: 121 KLSVKVEKLPP--PPKSA-------PVKNIGSVSMVTGLA 150

[Close]

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 40  GGKYTWTTN--INFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNV 99
           GG   W TN   N+  WS    F V D LYF + K   +VL+VNK  YD+CN  + +  V
Sbjct: 34  GGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRV 93

Query: 100 TRGGRDVFNLTQAKPYYFLSG-RGFCFQGMKVAIFV 133
             G  ++ +L +  P+YF+SG    C +G K+ + V
Sbjct: 94  DDGDSEI-SLDRYGPFYFISGNEDNCKKGQKLNVVV 128

[Close]

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot
Match: Q9SK27 (Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 38  VGGGKYTW----TTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDF 97
           VGG    W    +++ +FT+W+    F VGD++ F ++    +VL+V K +Y+SCN  + 
Sbjct: 33  VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNP 92

Query: 98  VFNVTRGGRDVFNLTQAKPYYFLSG-RGFCFQGMKVAIFV 133
           + N T G   V  L ++ P+YF+SG  G C +G K+++ V
Sbjct: 93  LANYTDGETKV-KLDRSGPFYFISGANGHCEKGQKLSLVV 131

[Close]

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot
Match: O82081 (Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 38/130 (29.23%), Postives = 58/130 (44.62%), Query Frame = 0


Query: 40  GGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTR 99
           GG   WT   +   W+  + F VGD L F +    ++V++V K  +DSC     +     
Sbjct: 29  GGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFAN 88

Query: 100 GGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSP--------PISSPKI-ANHSSSI 159
           G   V   T  K Y+     G C QGMK+ + V  +         P + P + A   SS+
Sbjct: 89  GNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVVPTATVAPTAPLPNTVPSLNAPSPSSV 148

Query: 160 QPLKPLSSLS 161
            P++PL  L+
Sbjct: 149 LPIQPLLPLN 158

[Close]

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot
Match: Q02917 (Early nodulin-55-2 OS=Glycine max OX=3847 GN=ENOD55-2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 38  VGGGKYTWTTNINFTD----WSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDF 97
           VGG + +W   ++  D    W+    F +GD L F ++KR  +V + N+T Y+ CN    
Sbjct: 31  VGGSEKSWKFPLSKPDSLSHWANSHRFKIGDTLIFKYEKRTESVHEGNETDYEGCNTVGK 90

Query: 98  VFNVTRGGRDVFNLTQAKPYYFLSG-RGFCFQGMKVAIFVEDSPPISSPKIANH--SSSI 157
              V  GG     LT+    +F+SG +  C  G+K+A+ V     ISS K   +  S S 
Sbjct: 91  YHIVFNGGNTKVMLTKPGFRHFISGNQSHCQMGLKLAVLV-----ISSNKTKKNLLSPSP 150

Query: 158 QPLKPLSSL 160
            P  P SSL
Sbjct: 151 SPSPPPSSL 154

[Close]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL
Match: A0A6J1JLN0 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.7e-94
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF
Sbjct: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 174
           FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 173

[Close]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL
Match: A0A6J1HAJ6 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 159/172 (92.44%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMT E  TVTTV VVVTMAGWLLGGV+GR+PVLHRVGGGKYTWTTN+NFTDWSIHEHF
Sbjct: 1   MFGMTVEATTVTTVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLL 173
           FCFQGMKVAIFVEDSPPISSPKI+NHSSSIQPLKPLSSLS+ IT+AFTK +L
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPKISNHSSSIQPLKPLSSLSVLITLAFTKIVL 172

[Close]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL
Match: A0A1S3BQT0 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 122/177 (68.93%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGM A+V  +TTVVVVV   GWLL GV+G+QPVLH VGGGKYTWTTNINFTDWSIHEHF
Sbjct: 1   MFGMAAKV-VITTVVVVV---GWLLCGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDK IYNVL+VNKTSY++CN+ DF+FN+T+GGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKHIYNVLEVNKTSYENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRG 120

Query: 121 FCFQGMKVAIFVED--SPP---ISSPKIANHSSSIQP-LKPLSSLSLFITIAFTKFL 172
           FCFQGMKVA+FVE+  +PP   IS P +  ++ ++ P LKPL     F+ +    FL
Sbjct: 121 FCFQGMKVAVFVEEYSTPPPTIISPPNLPKNNPNLSPSLKPLLIPFSFLLLIAQYFL 173

[Close]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL
Match: A0A6J1DWA4 (lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.9e-59
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFG+      V    V +   GWLL GV+GR P+LHRVGGGKYTW  N+NFTDWSIHEHF
Sbjct: 1   MFGI------VMAEAVAMVALGWLLCGVEGRDPMLHRVGGGKYTWAPNVNFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDK IYNVL+VN+TSY+SCNE DF+FN+TRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISS-----PKIANHSSSIQPLKPLSSLSLFITIAFTKFL 172
           FC+QGMK+A+FVE+SPP ++     PK++N S SI  L+PL SL L +      F+
Sbjct: 121 FCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLLFTIIANFI 168

[Close]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL
Match: A0A2P6QEZ3 (Putative cupredoxin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0049891 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.1e-45
Identity = 91/165 (55.15%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           M G    V  + +++V+V M   +   V+ R+PVLHRVGGG++TW  +INFTDWS  EHF
Sbjct: 1   MEGSNNRVEWLMSMLVIVIMMILMSHAVESREPVLHRVGGGRFTWAPDINFTDWSSKEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDK IYNVL+VN+TSY++C + ++++NVTRGGRDVFNLT+AK YYFL GRG
Sbjct: 61  YVGDWLYFGFDKHIYNVLEVNRTSYENCFDKEYIYNVTRGGRDVFNLTEAKTYYFLGGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITI 166
           +C++GMKVA+FVE +PP     + +HS   +   P SS +  I +
Sbjct: 121 YCYKGMKVAVFVEQTPP-----VLHHSPGFKSY-PYSSTNFIIIL 159

[Close]

BLAST of CmaCh10G009720 vs. NCBI nr
Match: XP_022988228.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 5.7e-94
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF
Sbjct: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 174
           FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 173

[Close]

BLAST of CmaCh10G009720 vs. NCBI nr
Match: XP_022960973.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 159/172 (92.44%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMT E  TVTTV VVVTMAGWLLGGV+GR+PVLHRVGGGKYTWTTN+NFTDWSIHEHF
Sbjct: 1   MFGMTVEATTVTTVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLL 173
           FCFQGMKVAIFVEDSPPISSPKI+NHSSSIQPLKPLSSLS+ IT+AFTK +L
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPKISNHSSSIQPLKPLSSLSVLITLAFTKIVL 172

[Close]

BLAST of CmaCh10G009720 vs. NCBI nr
Match: XP_023516910.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 159/172 (92.44%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMT EVATV TV VVVTMAGWLLGGV+GR+PVLHRVGGGKYTWTTN+NFTDWSIHEHF
Sbjct: 1   MFGMTTEVATVATVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLL 173
           FCFQGMKVAIFVEDSPPISSP+I+NHSSSIQPLKPLSSLS+ IT+AFTK +L
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPRISNHSSSIQPLKPLSSLSVLITLAFTKIVL 172

[Close]

BLAST of CmaCh10G009720 vs. NCBI nr
Match: KAG7023887.1 (Lamin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 157/172 (91.28%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGMTAE  TVTTV V+VTMAGWLLGGV+GR+PVLHRVGGGKYTWTTN+NFTDWSIHEHF
Sbjct: 1   MFGMTAEATTVTTVAVIVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLL 173
           FCFQGMKVAIFVEDSPPISSPK++NHSSSIQPLKPLSSLS+ IT+AF K +L
Sbjct: 121 FCFQGMKVAIFVEDSPPISSPKVSNHSSSIQPLKPLSSLSVLITLAFAKIVL 172

[Close]

BLAST of CmaCh10G009720 vs. NCBI nr
Match: XP_038880463.1 (lamin-like protein [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 3.6e-64
Identity = 120/157 (76.43%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60
           MFGM  E     T VV + +AGWLL G +GRQPVLHRVGGGKYTWTTNINFTDWSIHEHF
Sbjct: 1   MFGMAVE---AVTTVVAMAVAGWLLFGAEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120
           YVGDWLYFGFDK IYNVL+VNKTSY+SCN+  F+FN+TRGGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKHIYNVLEVNKTSYESCNDKGFIFNLTRGGRDVFNLTEAKTYYFLSGRG 120

Query: 121 FCFQGMKVAIFVEDSPPISS----PKIANHSSSIQPL 154
           FCFQGMKVA+FVE+SPPI S    P + NHS S+QPL
Sbjct: 121 FCFQGMKVAVFVEESPPIVSPPNLPNLPNHSPSLQPL 154

[Close]

BLAST of CmaCh10G009720 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 35  LHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFV 94
           LHRVGGG+YTW +++NF+DW+ H+ FY GDWLYFGF++  +N+LQVNK+SY+ C +ND++
Sbjct: 27  LHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHNILQVNKSSYEQCVDNDYI 86

Query: 95  FNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLK 154
           FN+TRGGRDVF L + KPYYF+ GRG+C +GMK+AI V   PP S+P   N +S+  PL 
Sbjct: 87  FNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQPPPSAP--TNFTSTTTPLI 146

Query: 155 PLSSLSLFITIAFTKFLL 173
           P ++++  I I   K LL
Sbjct: 147 PPNAITAAILIFAFKALL 162

[Close]

BLAST of CmaCh10G009720 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 8   VATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLY 67
           +A  T ++  V +A  +   + G     + VG  K+ W  NIN+T W+  +HFY+GDWLY
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKF-WNPNINYTIWAQGKHFYLGDWLY 60

Query: 68  FGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRG-GRDVFNLTQAKPYYFLSGRGFCFQGM 127
           F FD+  +N+L+VNKT Y+ C  +  + N TRG GRD+  L Q K YY L G+G C+ GM
Sbjct: 61  FVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGM 120

Query: 128 KVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIA 167
           K+++ VE  PP   PK A       P+K + S+S+   +A
Sbjct: 121 KLSVKVEKLPP--PPKSA-------PVKNIGSVSMVTGLA 150

[Close]

BLAST of CmaCh10G009720 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 40  GGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTR 99
           G K  W  NIN+T W+  +HFYVGDWLYF F +  +N+L+VNK  Y+ C  N  + N TR
Sbjct: 32  GDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNILEVNKADYEKCISNRPIRNYTR 91

Query: 100 G-GRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPP 138
           G GRD+  L + + YY L GRG C QGMK+ + VE  PP
Sbjct: 92  GAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVETPPP 130

[Close]

BLAST of CmaCh10G009720 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-23
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 38  VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNV 97
           VG  K+ W  NIN+T W+  +HFY+ DWLYF +++  YNV++VN+T+Y SCN N+ + N 
Sbjct: 29  VGDNKF-WNPNINYTIWAQDKHFYLDDWLYFVYERNQYNVIEVNETNYISCNPNNPIANW 88

Query: 98  TRG-GRDVFNLTQAKPYYFLSGR-GFCFQGMKVAIFVEDSPP 138
           +RG GRD+ +L   + YY +SG  G C+ GMK+A+ VE  PP
Sbjct: 89  SRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVEKPPP 129

[Close]

BLAST of CmaCh10G009720 vs. TAIR 10
Match: AT4G12880.2 (early nodulin-like protein 19 )

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-12
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 60  FYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRG-GRDVFNLTQAKPYYFLSG 119
           F+    L F F +  +N+L+VNK  Y+ C  N  + N TRG GRD+  L + + YY L G
Sbjct: 14  FFFNFSLNFVFYRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDG 73

Query: 120 RGFCFQGMKVAIFVEDSPP 138
           RG C QGMK+ + VE  PP
Sbjct: 74  RGGCVQGMKLDVLVETPPP 92

The following BLAST results are available for this feature:

BLAST of CmaCh10G009720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	2.2e-24	40.00	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q9T076	2.6e-09	37.50	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]
Q9SK27	3.4e-09	35.00	Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 S...	[more]
O82081	1.4e-07	29.23	Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1	[more]
Q02917	4.2e-07	33.33	Early nodulin-55-2 OS=Glycine max OX=3847 GN=ENOD55-2 PE=2 SV=1	[more]

BLAST of CmaCh10G009720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLN0	2.7e-94	100.00	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1	[more]
A0A6J1HAJ6	5.0e-88	92.44	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1	[more]
A0A1S3BQT0	1.5e-60	68.93	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1	[more]
A0A6J1DWA4	2.9e-59	65.91	lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1	[more]
A0A2P6QEZ3	1.1e-45	55.15	Putative cupredoxin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0049891 PE=4 SV=...	[more]

BLAST of CmaCh10G009720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988228.1	5.7e-94	100.00	lamin-like protein [Cucurbita maxima]	[more]
XP_022960973.1	1.0e-87	92.44	lamin-like protein [Cucurbita moschata]	[more]
XP_023516910.1	1.0e-87	92.44	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
KAG7023887.1	2.3e-87	91.28	Lamin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038880463.1	3.6e-64	76.43	lamin-like protein [Benincasa hispida]	[more]

BLAST of CmaCh10G009720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27035.1	1.4e-42	55.07	early nodulin-like protein 20	[more]
AT5G15350.1	1.6e-25	40.00	early nodulin-like protein 17	[more]
AT4G12880.1	1.1e-23	50.51	early nodulin-like protein 19	[more]
AT3G01070.1	7.3e-23	48.04	early nodulin-like protein 16	[more]
AT4G12880.2	3.4e-12	44.30	early nodulin-like protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 45..126 e-value: 4.6E-17 score: 61.8
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 34..134 score: 29.994055
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 35..141 e-value: 3.0E-24 score: 87.2
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 35..132
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 12..143
None	No IPR available	PANTHER	PTHR33021:SF262	EARLY NODULIN-LIKE PROTEIN 20	coord: 12..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G009720.1	CmaCh10G009720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity