CmaCh10G005850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G005850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr10: 2668370 .. 2673100 (+)
RNA-Seq Expression	CmaCh10G005850
Synteny	CmaCh10G005850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTGTTCATCCAGCAGAAAGAAACAGCATGCCCTTTCAGAAGATATACACAAAAAAGGTAAATATATAGAAGTGGAGAGCATACATTATTCCTAAAAACACTAAATCTTGTTCATCGCGTGAAAAATCCACAATATAAACACAACCCCAGAAAAATATTCACAGAAAATTCAGAATTCAGCATGAAAAACCCAACAGTGATGCAGCAAATCGAGGAAGAAACCAGATCAAAGAACAGAAACTATAAACAAAGAGAAGGGTATGCACAAATTCGAGTTGAAAAGAGAAAAAAGGAGAAACCCAGATAGGAAACAGACCTGAAAACTCAAATCCCTGGGCAGGCCGCAGGAATCTCGGTTGAGAGAGGGCCAAAGAGGAAGAGAGTTGAGAGAGGAAATGGAGCGATATATACAAAGGGCTTAAAGTGGACGAAAAAAGAAGAAGAAAAAGGAGATTGGAATAAAATTAAGAAGTAAAAAGTGGATTAAAAAAAGGGTTAACTGGGGTAGAGGTGGGGGCAGAACGTAACAAGAAGGAAGAAGAAGGGGGTTAACGGAGAGGGAAGGTCATAGCCATAGATGAAGGCGGCGAGGTGTACGGATGCTTTTGAATTGAAGAACGAGGCTTAGATGCAAGTGACGACGGCGCTGTCTGGCGCTGGCGCTGCCTTGTTTTGAATTGGGATTTGATCATTGTCTGTTTCTTCCTGTCTCTGTAACCAATCCCTCAATTCTCCTCCTCCTCCATTTTTACTCCTCATTTTATTTTAATAAATTATTTATTTTTCGTTATTATTTTACCCGACAATCATTTATTTCTTCCTTAATTTTCAAAAGGTAAGATATATAATTCATAAAAATAAACAATTAATTAATTAATTATACAGCTAGGATTATGCATTTTATGAAACCTTTTACATGAGAAAAGGGTGGGGGGACCATGAAGTAAGGGCTGGCTGGCTGGCTGGCAAAAAAGTTTTCGGACGAATAGAGTTACGCCACGTGTAATATTTGAAACGCCTTAATAATAAATAAATAAACAAATAATTGGCCGTTCTCGACTGCCACCTATTTTGAATCTGGGTTTGTCTGTTCCCTTTTGATTTTTCTTTTCTCCATTGATAAGTCAAATTTGTCCGACAACTAATTATGTCATTTTCTTTGACCATTAATAAATCGAGATCTTATTTAAATAAGAGTAATATTGAATTTAAAATAATTGTGAAAAAATTAAAATTATTATTTATATCATAAAATATATTTTCATTTTCAGCGACTCGATTATAATATTTTTAAAGTCATAGGTTACTTTTAAACTCAAACGGCCAATTAAATAAAACTATTGAAAAAAAACAAACATAAAGATGTTACCAAATTTGTTTAGGAATTGCTCTTTCAAGAAAAATTTAAAATTTTATTGCTGGGACAGATAAATTAATAGAGTACAAAGCTTAAGTTTAAGTTTTACCTCATTCTAATTAGGTAGAGAGCGACTGTGGAGTTATTGAAGTGTTGTCTCGCAGCAAGATAGAGACGATAACTAAGTTACATAAAGAATATGGGGAGGTCAACAACATGTCGTGGAAGGAGATAACGGGTGGAGCCAATGACCCATTAAGACTGCCGTATCTACAACTACATCTCCGAGCAGCAATTAAATGGTGGGTTATAACTGTTATATTCACTTCTCAAATGCAACAATACCTAAATATTTATTCACTTGTGCATCACAATTCGTCGTGCACTATAAGCCACAATAGAGCCCACAAATAGCGCATAGTTGGGCTTTGGCCCAAGTTGAAGAAGTGGGCCAATATTCTATCTTCCCAAATGGATTTAGTATAAATACGTGGGAAAATGGAGTAAATACTCGGAAATATACTTAAATTTCAATGATAAATGGCCTCTACCTCTAAATACTTGGAGTCGACTATTTTAGTTGTACAGTTACCGACACATGAAACATGATGGTACACAACGTTAGTCGTGACGCTCTAACCTAACATCTCTAACATGACGTTTGTGTAACCATTTAAGCTCACTACTAGTATATATTGTCCATTTTAACCCGTTGCGTATCATCATGAGTCTCACAGTTTTAAAACGCGTCTACCAAGAAGAGGTTTCCATACCCATATAATGAATGTTTCATTCCCTCTCCAACCGATATGAGAATTTCACATTCTACCCACTTGGGGCTCGCTGGCATATCGTCCGTATCTGGTTCTAATATCATTTGTAACAGCTCAAGCCCACCGTTAGTATATATTGTCCACTTTAGACCGTTACATATCGTCGTCAACTTCACGATTTTAAAACGTGTCTACTAGATAGAAGTTTCCACACTCATATAAAGAATGTTTCGTGTTAAGGATTATTGGGAGTGAGTCCCACATTGGTTAATATAGTGGAAGATCATGGATTTATAAGTAAGGAATACATCTCTATTGGTATGAGACCTTTTGAGGAAGCCCAAAGCAAAGTTATGATAACTTAGGCTCAAAGTGGACAATATTATACCATTGTGAAGATTCGTGATTTCTAATATGGTATCAAAGGCATACCCTAAACTCAGCTATATCAATAGAATCCTCAAATATCGAACAAATGGTGTACTTTGTTCGAGGGGAGGATTTGAGGATTATTGAGAGTGAGTCTCACATCAGTTAATTTTCGTGATTCCTAACACTTCGTTCCCTCTCCAATCGAAGGTTTAACTCCACAAACCTAACATTTTATATCACAAGACTTGGCTTAGTCACACCAACCCAAGCCAAAACCGAGCTACATCGACAACACCTATAAACTTAGCTTCAAACGTGCTAGAGAACAACATGCAAATAGAGGTTATACATAGTAAATCAAGAATAAATCCTCTAATAATGCCATTCAATCAAAGAACTAGGAATAAATGGAACATATCTCTTAACCTAATCCAACCACCTTCCATGATTTATTTTGCATAATGATTCCTTATATACACAGATGGGTTTAGAGTATTAAACACTTGCTTAAGACTTCTAAGTGGCAAAGAAGGATATGCATACAACAACCCAAGCCTGATGGGTTACGTAACTAAGATGCACAATTCTAAAGCTGGTTGATTTCAATTCATGAACTAATTTGGAATAGAATATAAACAACTAAGTAAAGGGGAAGATTAATCACAATTAATGGATAAGCACAAAAATAATCCTACGTTTTTTTAGACCAAAATTAGAAAACGTGACCAAAAAGCTTATAAGAATCTAACCTACTTGATTTAAGATTAAAAAAAATGGGTTATGTTTACCTTTGCCAGTAATTTAAAAAAATTTATTCGTGCATATTTTAGTTTAGCTGAGTGATTGAACGAACGATGTAAATGATTTAAAAATTATTCTTTAACAACGATGTCTGCCCATTGATTGATTGATTAATATGGACGAGTATATGAATAGGACATTAGTTAATGGGGATTTTAGCTGAAAACCAATGTCTATCTCATGGAATCCATGGCACACCAAGACACGAGCTGTTTGATATTACTAAAAACATAAATAGATTGGGAAGAGTGGATTGGATTCTAGTATAGTGTGTGTTAAATCAGCTTTTGGTTTCTGTCAGCAACAAATATTCTTCCAAATTGGAACACGACCGAGGTTGAGCATCTAAGCATCCACCTTTTTTTTCACCCATGCTTCTTGTTCTTTTCCCACATTCTTATTTAGTTTAGTTCAAATCACACATCTAGAAGGTCGTCGTCGGCGAACTATTTACCGTTTGAAAGAGAATAAAACGGCTTAAAATTTCAAAAACTAATCTAAATCAATTACTTACCCCTTGTTACAATTGCACTCTTGTAATAGCGAGAGAACGATTATGCGGTACTTATTTTAACCCAATGATCAAGTCGGCGTATGCTCGAGCCTCGAATCATATTTGGGAGGAATGTTTTTAGAAAATGTGAGTGAAGAAATACATGGAAAACAACTTGAAAGAAAGCAAATGTTATAAAAACACCAACGACTTTGATATAACCCAGATAGGAAAAAGTGACAACTAGTCTATCCCTGTAGTACATTTTGGAGATAGACATGATTTTGGTGAACAGTCATACATTCTTGTATTGACACAACATGAAATAGTAAAAGTCCATCTAAAATGAAAGCATGTAAGAGGGATTTCGGTTATAGACAACACATCCTAAACAAACATAGCTGAGACATTCGACGTATGGCCATAAACACCACGCCCCGGACAAACATGGACGGTGATAAAAATACGTACCAACTAGAAATGTGAAATGTGTAAAATAATATATTATTGGAGAGTGTGATTATAATTAAATATATGTATAGTTAATGTGAGTTATAAAGGGACTTATGCATGCATGCGCATCTAAAATTATTCCAATAAACCTAATTTACCTTATTTGAAGAAACAATAGAAACCCACCACCGCACTCCTTATATAAAGCATCAAAGCCGGGTGCCTAAAACGCAGGCTTCTCCCTTTACTTCCCTTTGCAGCTAAACCCTTTTGGTCTCCCTTTGGGCTCAGAAAAGGAAACAAAAATGATGGCTCCCATTGAATCCAGTGGCAAGAACAGCCATGGAGATTGCGGCAATGGCGGTAAGAACTACCTCGACCCACCTCCTCCGCCACTGCCGCTTCCTCCGCCGCCACCCGGTGCCGGCGGAGGCGTAAGCATAGTTGCAGATTATGACTTTGCTCCGGCAGCATGA

mRNA sequence

ATGGTTTTTGTTCATCCAGCAGAAAGAAACAGCATGCCCTTTCAGAAGATATACACAAAAAAGGTAGAGAGCGACTGTGGAGTTATTGAAGTGTTGTCTCGCAGCAAGATAGAGACGATAACTAAGTTACATAAAGAATATGGGGAGGTCAACAACATGTCGTGGAAGGAGATAACGGGTGGAGCCAATGACCCATTAAGACTGCCGTATCTACAACTACATCTCCGAGCAGCAATTAAATGTGGCAAGAACAGCCATGGAGATTGCGGCAATGGCGGTAAGAACTACCTCGACCCACCTCCTCCGCCACTGCCGCTTCCTCCGCCGCCACCCGGTGCCGGCGGAGGCGTAAGCATAGTTGCAGATTATGACTTTGCTCCGGCAGCATGA

Coding sequence (CDS)

ATGGTTTTTGTTCATCCAGCAGAAAGAAACAGCATGCCCTTTCAGAAGATATACACAAAAAAGGTAGAGAGCGACTGTGGAGTTATTGAAGTGTTGTCTCGCAGCAAGATAGAGACGATAACTAAGTTACATAAAGAATATGGGGAGGTCAACAACATGTCGTGGAAGGAGATAACGGGTGGAGCCAATGACCCATTAAGACTGCCGTATCTACAACTACATCTCCGAGCAGCAATTAAATGTGGCAAGAACAGCCATGGAGATTGCGGCAATGGCGGTAAGAACTACCTCGACCCACCTCCTCCGCCACTGCCGCTTCCTCCGCCGCCACCCGGTGCCGGCGGAGGCGTAAGCATAGTTGCAGATTATGACTTTGCTCCGGCAGCATGA

Protein sequence

MVFVHPAERNSMPFQKIYTKKVESDCGVIEVLSRSKIETITKLHKEYGEVNNMSWKEITGGANDPLRLPYLQLHLRAAIKCGKNSHGDCGNGGKNYLDPPPPPLPLPPPPPGAGGGVSIVADYDFAPAA

Homology

[Close]

BLAST of CmaCh10G005850 vs. ExPASy TrEMBL
Match: A0A0A0LUD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 38/50 (76.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 83  KNSHGDCGNGGKNYLDPPPP---PLPLPPPPPGAGGGVSIVADYDFAPAA 130
           KNSHGD  +GGKNYLDPPPP   PLPLP P    GGG SIVADYDFAPAA
Sbjct: 14  KNSHGDRCHGGKNYLDPPPPPPLPLPLPQPHIDIGGGGSIVADYDFAPAA 63

[Close]

BLAST of CmaCh10G005850 vs. NCBI nr
Match: KGN65403.1 (hypothetical protein Csa_019940 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 38/50 (76.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 83  KNSHGDCGNGGKNYLDPPPP---PLPLPPPPPGAGGGVSIVADYDFAPAA 130
           KNSHGD  +GGKNYLDPPPP   PLPLP P    GGG SIVADYDFAPAA
Sbjct: 14  KNSHGDRCHGGKNYLDPPPPPPLPLPLPQPHIDIGGGGSIVADYDFAPAA 63

The following BLAST results are available for this feature:

BLAST of CmaCh10G005850 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh10G005850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUD7	4.5e-09	76.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1	[more]

BLAST of CmaCh10G005850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65403.1	9.3e-09	76.00	hypothetical protein Csa_019940 [Cucumis sativus]	[more]

BLAST of CmaCh10G005850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G005850.1	CmaCh10G005850.1	mRNA