CmaCh10G004330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G004330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor IBH1-like 1
Location	Cma_Chr10: 1969560 .. 1970548 (-)
RNA-Seq Expression	CmaCh10G004330
Synteny	CmaCh10G004330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTAAATGGCCCACCAATCCCCTCCTTTAACCACATAAATTGGTTTCTGCACATTCTTCTATTTCCCATGCTTCTCTCTCTTGGATCTCTAAATCTTCCCAACTAATAATCCTTTCTCTCATTAAACCACATATTTCCCAGGTATGTTCTTTCTTTTTTTCTCATTTTTTCATCAACTTTTCCATAATCTTCTATCTTTGATCCAATTTCCCCTGATAATTCTTTGTTTTTTTGTTTTTAAATATCAGAATGCGCAATCCCAGTTCGTTGAAACGAGATTTTTTGAAGAAATGGCTGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACCGTCGCCGACAGAAAAAGGGCAATAAAGTTATCCGCCGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTCCATGATGGCAGCTTCTTGGTGGCTAACGGCTTACTGGGTCGTGCCGTATGCGAGAGAATCAAGCAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTGGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAGAAGGTTGGTGCAAAAAAGAACGAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTGTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACACAGGTTGATGTCATGCGGTGTCTTGCAACAACTGCATACGTAGCGCCACCATCATTATGAGTATCCAAATTTCTATTTCTTCTTTGGCCAACATTGGTATGATGAATGGATGGTGAAAGTTATGGGCTTTTTTTTTTTTGTTCTTTAAACATATGTATAGCTAATTGGGAGTTAAATGTAGTGATAATTTGAAAACATTATGTTGTACATATTAAATTTTATGTAAGTTAAGACATATATTATTAC

mRNA sequence

TCTCTAAATGGCCCACCAATCCCCTCCTTTAACCACATAAATTGGTTTCTGCACATTCTTCTATTTCCCATGCTTCTCTCTCTTGGATCTCTAAATCTTCCCAACTAATAATCCTTTCTCTCATTAAACCACATATTTCCCAGATGCGCAATCCCAGTTCGTTGAAACGAGATTTTTTGAAGAAATGGCTGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACCGTCGCCGACAGAAAAAGGGCAATAAAGTTATCCGCCGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTCCATGATGGCAGCTTCTTGGTGGCTAACGGCTTACTGGGTCGTGCCGTATGCGAGAGAATCAAGCAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTGGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAGAAGGTTGGTGCAAAAAAGAACGAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTGTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACACAGGTTGATGTCATGCGGTGTCTTGCAACAACTGCATACGTAGCGCCACCATCATTATGAGTATCCAAATTTCTATTTCTTCTTTGGCCAACATTGGTATGATGAATGGATGGTGAAAGTTATGGGCTTTTTTTTTTTTGTTCTTTAAACATATGTATAGCTAATTGGGAGTTAAATGTAGTGATAATTTGAAAACATTATGTTGTACATATTAAATTTTATGTAAGTTAAGACATATATTATTAC

Coding sequence (CDS)

ATGCGCAATCCCAGTTCGTTGAAACGAGATTTTTTGAAGAAATGGCTGATGGGTCTTCAAATATACACAACCACCAACCGAAACATGACCGTCGCCGACAGAAAAAGGGCAATAAAGTTATCCGCCGATATTGCTTTGGCGTCCTCCAGAAACTGTGCCACTCGTTGGAGCCGAGCTGTCATCGCTGGCACCTCCGTCCATGATGGCAGCTTCTTGGTGGCTAACGGCTTACTGGGTCGTGCCGTATGCGAGAGAATCAAGCAAAGCAGTTCAAAAATCACGCGAAGTTCGTGGAGTAGTGGGAAGATTCTCAAACGGAGCCGCCGTGTGGGGCGGAGGAAAAAATGTAGGAAGCCGGCTGCTGAGTGGATTGCAAGAAGGTTGGTGCAAAAAAGAACGAGAACGCTTCGTGGGTTGGTTCCCGGAGGTGAATTTATGGATGAAGTGTCGTTAATTGAAGAAACCCTAGATTACATTTTGGCTCTTCAAACACAGGTTGATGTCATGCGGTGTCTTGCAACAACTGCATACGTAGCGCCACCATCATTATGA

Protein sequence

MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPAAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAPPSL

Homology

[Close]

BLAST of CmaCh10G004330 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 83/178 (46.63%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  +FLKKW MGLQI+  +  N +V +RK+AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRK-KCRKP 120
           I  T+  D +FLV   L G      I   + K+ + +    KI++RS+++ RRK K    
Sbjct: 61  IEKTATED-NFLVRQMLSGIKAETLI---NKKLPKKTVCHRKIVRRSKKILRRKSKSASE 120

Query: 121 AAEWIARRLVQKRTRTLRGLVPGGEFM-DEVSLIEETLDYILALQTQVDVMRCLATTA 177
            A   A+RLV++RT+ LR +VPGGE M ++V L++ETLDYI++LQTQV+VMR +   A
Sbjct: 121 EAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAA 174

[Close]

BLAST of CmaCh10G004330 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.2e-05
Identity = 37/96 (38.54%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 77  LLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPAAEWIARRLVQKRTRTL 136
           L  RA+  R  +  +KI R S    KI  + RR  +R    + AAE             L
Sbjct: 66  LWSRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPVVEEAAE------------RL 125

Query: 137 RGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCL 173
           R LVPGG  M+   L+EET  YI  L  QV VM+CL
Sbjct: 126 RNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCL 149

[Close]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL
Match: A0A6J1JMR3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 181 PSL 184
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL
Match: A0A6J1E715 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.7e-90
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKRDFLKKW MGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANG+LGRAVCERIK+SSSKITRSSWSS KILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 120

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIA+RLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 181 PSL 184
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL
Match: A0A1S3B8V1 (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 136/177 (76.84%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M+NP+SLK++FLKKW+MGLQIYTTTN NMTVA+RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQ-SSSKITRSSWSSGKILKRSRRVGRRKKCRKP 120
           IA +SV + S LVANG+LGR +CER+KQ S+ KITRSSWSSGKI+KRSRRV RR++ R  
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 --AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 175
             AA  IARRLVQ+RT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LA+
Sbjct: 121 CMAAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAS 177

[Close]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL
Match: A0A6J1F0A2 (transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441170 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.5e-61
Identity = 135/183 (73.77%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW+MGL+IYTT+N+NMTV  RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGR-RKKCRKP 120
           IA TSV DGS LVA+ LLGR +       + KITR  WSSGKI+KRSRRV R R+KC+KP
Sbjct: 61  IAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSSGKIVKRSRRVQRMRRKCKKP 120

Query: 121 AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVA 180
           AAE IA++LV+KR + LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMRCLA TAY+A
Sbjct: 121 AAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIA 175

Query: 181 PPS 183
             S
Sbjct: 181 SSS 175

[Close]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL
Match: A0A0A0LWQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.2e-61
Identity = 134/177 (75.71%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M+N +SLK++F KKW+MGLQIYTTTN NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQ-SSSKITRSSWSSGKILKRSRRVGRRKKCRKP 120
           IA +SV + S  VANG+LGR +CER+KQ S+ KITRSSWSSGKI+KRSRRV RR++ R  
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 --AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 175
             AA  IARRLVQKRT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LAT
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAT 177

[Close]

BLAST of CmaCh10G004330 vs. NCBI nr
Match: XP_022988593.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 181 PSL 184
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of CmaCh10G004330 vs. NCBI nr
Match: KAG7023415.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKRDFLKKW MGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANG+LGRAVCERIK+SSSKITRSSWSS KILKRSRRVGRRKKCRKPA
Sbjct: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 128

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIA+RLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 129 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 188

Query: 181 PSL 184
           PSL
Sbjct: 189 PSL 191

[Close]

BLAST of CmaCh10G004330 vs. NCBI nr
Match: XP_022921880.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKRDFLKKW MGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANG+LGRAVCERIK+SSSKITRSSWSS KILKRSRRVGRRKKCRKPA
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRRKKCRKPA 120

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIA+RLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 181 PSL 184
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of CmaCh10G004330 vs. NCBI nr
Match: XP_023515816.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M NP+SLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MSNPNSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPA 120
           IAGTSVHDGSFLVANG+LGRAVCERIK+SSSKITRSSW SGKILKRSRRVGRRKKCRK  
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWCSGKILKRSRRVGRRKKCRKAG 120

Query: 121 AEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180
           AEWIA+RLVQKRTR LRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP
Sbjct: 121 AEWIAKRLVQKRTRMLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAP 180

Query: 181 PSL 184
           PSL
Sbjct: 181 PSL 183

[Close]

BLAST of CmaCh10G004330 vs. NCBI nr
Match: KAG6589740.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 6.9e-74
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 29  MTVADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGLLGRAVCERIKQ 88
           MTVADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANG+LGRAVCERIK+
Sbjct: 1   MTVADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGVLGRAVCERIKE 60

Query: 89  SSSKITRSSWSSGKILKRSRRVGRRKKCRKPAAEWIARRLVQKRTRTLRGLVPGGEFMDE 148
           SSSKITRSSWSS KILKRSRRVGRRKKCRKPAAEWIA+RLVQKRTRTLRGLVPGGEFMDE
Sbjct: 61  SSSKITRSSWSSRKILKRSRRVGRRKKCRKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDE 120

Query: 149 VSLIEETLDYILALQTQVDVMRCLATTAYVAPPSL 184
           VSLIEETLDYILALQTQVDVMRCLATTAYVAPPSL
Sbjct: 121 VSLIEETLDYILALQTQVDVMRCLATTAYVAPPSL 155

[Close]

BLAST of CmaCh10G004330 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 83/178 (46.63%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  +FLKKW MGLQI+  +  N +V +RK+AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRK-KCRKP 120
           I  T+  D +FLV   L G      I   + K+ + +    KI++RS+++ RRK K    
Sbjct: 61  IEKTATED-NFLVRQMLSGIKAETLI---NKKLPKKTVCHRKIVRRSKKILRRKSKSASE 120

Query: 121 AAEWIARRLVQKRTRTLRGLVPGGEFM-DEVSLIEETLDYILALQTQVDVMRCLATTA 177
            A   A+RLV++RT+ LR +VPGGE M ++V L++ETLDYI++LQTQV+VMR +   A
Sbjct: 121 EAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAA 174

[Close]

BLAST of CmaCh10G004330 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 83/178 (46.63%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  +FLKKW MGLQI+  +  N +V +RK+AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRK-KCRKP 120
           I  T+  D +FLV   L G      I   + K+ + +    KI++RS+++ RRK K    
Sbjct: 61  IEKTATED-NFLVRQMLSGIKAETLI---NKKLPKKTVCHRKIVRRSKKILRRKSKSASE 120

Query: 121 AAEWIARRLVQKRTRTLRGLVPGGEFM-DEVSLIEETLDYILALQTQVDVMRCLATTA 177
            A   A+RLV++RT+ LR +VPGGE M ++V L++ETLDYI++LQTQV+VMR +   A
Sbjct: 121 EAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAA 174

[Close]

BLAST of CmaCh10G004330 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-17
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 1   MRNPSSLKRDFLKKWLMGLQIY-TTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRA 60
           M   + +K++F+KKW+  L +  ++    + V +RK AI+LS+D+A+A++RN +T WSRA
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 61  VIAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSR-RVGRRKKCRK 120
           +I+                           S   T +   + +ILK++R R+  R    +
Sbjct: 62  LIS--------------------------RSGNKTANKPMARRILKKARNRMKNRCNILR 121

Query: 121 PAAEWIARRLVQKRTRTLRGLVPGGEFMDEVS-LIEETLDYILALQTQVDVMRCLA 174
               + A+  V+KRT  L+ LVPGGE +D+   LI ETLDYI+ L+ QVDVMR +A
Sbjct: 122 RNGNFTAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of CmaCh10G004330 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-06
Identity = 37/96 (38.54%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 77  LLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPAAEWIARRLVQKRTRTL 136
           L  RA+  R  +  +KI R S    KI  + RR  +R    + AAE             L
Sbjct: 66  LWSRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPVVEEAAE------------RL 125

Query: 137 RGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCL 173
           R LVPGG  M+   L+EET  YI  L  QV VM+CL
Sbjct: 126 RNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCL 149

[Close]

BLAST of CmaCh10G004330 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 46/162 (28.40%), Postives = 72/162 (44.44%), Query Frame = 0


Query: 23  TTTNRNMT---VADRKRAIKLSADIALASSRNCATRWSRAVIAGTSVHDGSFLVANGLLG 82
           +TT+ N T   V+   R I+ +AD  LA+S    TRWSRA++A                 
Sbjct: 69  STTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILA----------------- 128

Query: 83  RAVCERIKQSSSKITRSSWSSGKILKRSRRVGRRKKCRKPAAEWIARRLVQKRTRTLRGL 142
                R++    K  ++  S+G   K  + +    + + PA        V+++ + L  L
Sbjct: 129 ----SRVRAKLKKHRKAKKSTGN-CKSRKGLTETNRIKLPA--------VERKLKILGRL 188

Query: 143 VPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTAYVAPP 182
           VPG   +   +L++E  DYI AL+ QV  M  LA     A P
Sbjct: 189 VPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAAAP 200

The following BLAST results are available for this feature:

BLAST of CmaCh10G004330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	1.6e-28	46.63	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
Q9SKX1	9.2e-05	38.54	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]

BLAST of CmaCh10G004330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMR3	1.9e-93	100.00	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=...	[more]
A0A6J1E715	5.7e-90	96.72	transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 P...	[more]
A0A1S3B8V1	1.3e-62	76.84	uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=...	[more]
A0A6J1F0A2	1.5e-61	73.77	transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0LWQ3	4.2e-61	75.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1	[more]

BLAST of CmaCh10G004330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988593.1	3.9e-93	100.00	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
KAG7023415.1	1.2e-89	96.72	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022921880.1	1.2e-89	96.72	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
XP_023515816.1	2.2e-88	95.08	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6589740.1	6.9e-74	97.42	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CmaCh10G004330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30410.2	1.1e-29	46.63	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	1.1e-29	46.63	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	4.8e-17	35.23	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT2G43060.1	6.6e-06	38.54	ILI1 binding bHLH 1	[more]
AT1G09250.1	7.3e-05	28.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..175
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..175
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 113..162 score: 8.962315
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 112..173 e-value: 3.1398E-13 score: 59.5584
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 114..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G004330.1	CmaCh10G004330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding