CmaCh10G004170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G004170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DUF676 domain-containing protein
Location	Cma_Chr10: 1906668 .. 1906943 (+)
RNA-Seq Expression	CmaCh10G004170
Synteny	CmaCh10G004170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGAGGCCTTAATCAAGTTCCTTGGACACGAGTAGATGTTAGCTTTCAGAAAAGCAGACAGAGATACATTGCTCACAGTACCATTCAGGCAAGTATAGAGTGAAGTAGTTTAGAAAGAAGAAAAAGAAAAGGATGTTTTTTTTTTATGCCTTCAGGTGAACCGCTATTGCCTCAAGCATTGACTCCGAGTACCTCTGTTCATATATTGCAAATCTTTTCCCATTTTAACAAACATTTGATGGCTTCAGGTGAAGAGCTATTGGTTGAATTC

mRNA sequence

ATGATTAGAGGCCTTAATCAAGTTCCTTGGACACGAGTAGATGTTAGCTTTCAGAAAAGCAGACAGAGATACATTGCTCACAGTACCATTCAGGCAAGTGAACCGCTATTGCCTCAAGCATTGACTCCGAGTACCTCTGTTCATATATTGCAAATCTTTTCCCATTTTAACAAACATTTGATGGCTTCAGGTGAAGAGCTATTGGTTGAATTC

Coding sequence (CDS)

ATGATTAGAGGCCTTAATCAAGTTCCTTGGACACGAGTAGATGTTAGCTTTCAGAAAAGCAGACAGAGATACATTGCTCACAGTACCATTCAGGCAAGTGAACCGCTATTGCCTCAAGCATTGACTCCGAGTACCTCTGTTCATATATTGCAAATCTTTTCCCATTTTAACAAACATTTGATGGCTTCAGGTGAAGAGCTATTGGTTGAATTC

Protein sequence

MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASEPLLPQALTPSTSVHILQIFSHFNKHLMASGEELLVEF

Homology

[Close]

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL
Match: A0A251QUT3 (DUF676 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G091600 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASEPLL 38
           MIRGL Q+PW RVDVSFQKSRQRYIAH+TIQASE LL
Sbjct: 380 MIRGLTQIPWERVDVSFQKSRQRYIAHNTIQASEELL 416

[Close]

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL
Match: A0A6J1JMH9 (uncharacterized protein LOC111485732 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485732 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 379 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 409

[Close]

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL
Match: A0A0A0LZP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420345 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
          MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 57 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 87

[Close]

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL
Match: A0A6J1E307 (uncharacterized protein LOC111430104 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430104 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 379 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 409

[Close]

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL
Match: A0A1S3BXX5 (uncharacterized protein LOC103494294 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494294 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 406 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 436

[Close]

BLAST of CmaCh10G004170 vs. NCBI nr
Match: KAG7023403.1 (hypothetical protein SDJN02_14428, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASEPLL 38
          MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASE LL
Sbjct: 59 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASEELL 95

[Close]

BLAST of CmaCh10G004170 vs. NCBI nr
Match: ONI27517.1 (hypothetical protein PRUPE_1G091600 [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASEPLL 38
           MIRGL Q+PW RVDVSFQKSRQRYIAH+TIQASE LL
Sbjct: 380 MIRGLTQIPWERVDVSFQKSRQRYIAHNTIQASEELL 416

[Close]

BLAST of CmaCh10G004170 vs. NCBI nr
Match: XP_038879828.1 (putative lipase ROG1 isoform X1 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 374 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 404

[Close]

BLAST of CmaCh10G004170 vs. NCBI nr
Match: XP_023516856.1 (uncharacterized protein LOC111780634 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 379 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 409

[Close]

BLAST of CmaCh10G004170 vs. NCBI nr
Match: XP_011656679.2 (putative lipase YDR444W [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ
Sbjct: 421 MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 451

[Close]

BLAST of CmaCh10G004170 vs. TAIR 10
Match: AT4G25770.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.9e-07
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MI GL+Q+ W RVDVSF  S+QRY+AHSTIQ
Sbjct: 365 MIHGLSQLSWERVDVSFHNSKQRYVAHSTIQ 395

[Close]

BLAST of CmaCh10G004170 vs. TAIR 10
Match: AT1G10040.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQASE 35
           MIR L ++ W RVDVSF+ + QR++AH+TIQASE
Sbjct: 359 MIRELTKLSWERVDVSFRGTLQRFLAHNTIQASE 392

[Close]

BLAST of CmaCh10G004170 vs. TAIR 10
Match: AT5G51180.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MI+GL+ V W +VDVSF  SRQR+ AHS IQ
Sbjct: 304 MIKGLSSVSWEKVDVSFHSSRQRFAAHSVIQ 334

[Close]

BLAST of CmaCh10G004170 vs. TAIR 10
Match: AT5G51180.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHSTIQ 32
           MI+GL+ V W +VDVSF  SRQR+ AHS IQ
Sbjct: 304 MIKGLSSVSWEKVDVSFHSSRQRFAAHSVIQ 334

[Close]

BLAST of CmaCh10G004170 vs. TAIR 10
Match: AT4G25770.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-05
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 1   MIRGLNQVPWTRVDVSFQKSRQRYIAHS 29
           MI GL+Q+ W RVDVSF  S+QRY+AHS
Sbjct: 365 MIHGLSQLSWERVDVSFHNSKQRYVAHS 392

The following BLAST results are available for this feature:

BLAST of CmaCh10G004170 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh10G004170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251QUT3	1.6e-08	86.49	DUF676 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G091600 PE=...	[more]
A0A6J1JMH9	3.6e-08	100.00	uncharacterized protein LOC111485732 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LZP2	3.6e-08	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420345 PE=4 SV=1	[more]
A0A6J1E307	3.6e-08	100.00	uncharacterized protein LOC111430104 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BXX5	3.6e-08	100.00	uncharacterized protein LOC103494294 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmaCh10G004170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023403.1	4.7e-10	97.30	hypothetical protein SDJN02_14428, partial [Cucurbita argyrosperma subsp. argyro...	[more]
ONI27517.1	3.3e-08	86.49	hypothetical protein PRUPE_1G091600 [Prunus persica]	[more]
XP_038879828.1	7.4e-08	100.00	putative lipase ROG1 isoform X1 [Benincasa hispida]	[more]
XP_023516856.1	7.4e-08	100.00	uncharacterized protein LOC111780634 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_011656679.2	7.4e-08	100.00	putative lipase YDR444W [Cucumis sativus]	[more]

BLAST of CmaCh10G004170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25770.1	3.9e-07	70.97	alpha/beta-Hydrolases superfamily protein	[more]
AT1G10040.2	7.4e-06	61.76	alpha/beta-Hydrolases superfamily protein	[more]
AT5G51180.1	1.3e-05	64.52	alpha/beta-Hydrolases superfamily protein	[more]
AT5G51180.2	1.3e-05	64.52	alpha/beta-Hydrolases superfamily protein	[more]
AT4G25770.2	1.7e-05	67.86	alpha/beta-Hydrolases superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G004170.1	CmaCh10G004170.1	mRNA