CmaCh10G003770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G003770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Fiber protein Fb15
Location	Cma_Chr10: 1732749 .. 1733021 (-)
RNA-Seq Expression	CmaCh10G003770
Synteny	CmaCh10G003770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

mRNA sequence

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Coding sequence (CDS)

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Protein sequence

MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCFGGMILSYLLALPEERRHLEHQQHAKEHGGH

Homology

[Close]

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL
Match: A0A6J1JG85 (uncharacterized protein LOC111484841 OS=Cucurbita maxima OX=3661 GN=LOC111484841 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL
Match: A0A6J1E7G2 (uncharacterized protein LOC111430103 OS=Cucurbita moschata OX=3662 GN=LOC111430103 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.2e-42
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKP+LSVDYVKKA QRGLDNYNAKYIQTGSIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHL HQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLAHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL
Match: A0A6J1IH01 (uncharacterized protein LOC111472849 OS=Cucurbita maxima OX=3661 GN=LOC111472849 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQF+SEI+GLKVKELP YVKP+LS+DY KKA QRGLDNYNAKYIQTGSIDPLLHVC+
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLSIDYAKKAVQRGLDNYNAKYIQTGSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL
Match: A0A6J1F109 (uncharacterized protein LOC111441149 OS=Cucurbita moschata OX=3662 GN=LOC111441149 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQF+SEI+GLKVKELP YVKP+L++D VKKA QRGLDNYNAKYIQT SIDPLLHVC+
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYNAKYIQTSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL
Match: A0A6J1C4T8 (uncharacterized protein LOC111007393 OS=Momordica charantia OX=3673 GN=LOC111007393 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAM+QF+SEIKGLKVKELP +VKP+LS+DY+KKA +RGLDNYNAKYIQTGSIDPLLHVCF
Sbjct: 1  MAMKQFFSEIKGLKVKELPGHVKPMLSIDYIKKAVERGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGM+ SYL+ALPEERRHL HQQHAKEHGGH
Sbjct: 61 GGMVFSYLVALPEERRHLAHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: XP_022987225.1 (uncharacterized protein LOC111484841 [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 4.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: XP_023515839.1 (uncharacterized protein LOC111779885 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 4.5e-42
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKP+LSVDYVKKA QRGLDNYNAKYIQT SIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: XP_022922030.1 (uncharacterized protein LOC111430103 [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 4.5e-42
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKP+LSVDYVKKA QRGLDNYNAKYIQTGSIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHL HQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLAHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: KAG7023370.1 (hypothetical protein SDJN02_14395, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQFYSEIKGLKVKELPAYVKP+LSVDYVKKA QRGLDNY+AKYIQTGSIDPLLHVCF
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYSAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHL HQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLAHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: XP_022974229.1 (uncharacterized protein LOC111472849 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 3.2e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMRQF+SEI+GLKVKELP YVKP+LS+DY KKA QRGLDNYNAKYIQTGSIDPLLHVC+
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLSIDYAKKAVQRGLDNYNAKYIQTGSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. TAIR 10
Match: AT4G30010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 137.5 bits (345), Expect = 5.3e-33
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA+R+ YSEI+G KV ELP Y+K   S++ VK + +RGLDNYN KYIQT S+DP+LH+CF
Sbjct: 1  MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GM  SYL+ALP ERRHLEHQQHAKEHGGH
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQHAKEHGGH 90

The following BLAST results are available for this feature:

BLAST of CmaCh10G003770 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh10G003770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JG85	2.3e-44	100.00	uncharacterized protein LOC111484841 OS=Cucurbita maxima OX=3661 GN=LOC111484841...	[more]
A0A6J1E7G2	2.2e-42	96.67	uncharacterized protein LOC111430103 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A6J1IH01	1.6e-40	90.00	uncharacterized protein LOC111472849 OS=Cucurbita maxima OX=3661 GN=LOC111472849...	[more]
A0A6J1F109	2.9e-39	88.89	uncharacterized protein LOC111441149 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A6J1C4T8	5.0e-39	85.56	uncharacterized protein LOC111007393 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of CmaCh10G003770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987225.1	4.8e-44	100.00	uncharacterized protein LOC111484841 [Cucurbita maxima]	[more]
XP_023515839.1	4.5e-42	96.67	uncharacterized protein LOC111779885 [Cucurbita pepo subsp. pepo]	[more]
XP_022922030.1	4.5e-42	96.67	uncharacterized protein LOC111430103 [Cucurbita moschata]	[more]
KAG7023370.1	1.7e-41	95.56	hypothetical protein SDJN02_14395, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974229.1	3.2e-40	90.00	uncharacterized protein LOC111472849 [Cucurbita maxima]	[more]

BLAST of CmaCh10G003770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30010.1	5.3e-33	68.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36059	OS02G0175800 PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003770.1	CmaCh10G003770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus