CmaCh10G002460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G002460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S28
Location	Cma_Chr10: 1094299 .. 1096590 (+)
RNA-Seq Expression	CmaCh10G002460
Synteny	CmaCh10G002460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGTAGGGCAAGGGAAGGTGGTGAGTGGTGAAACTACGAATTGAGAGAGGACCACTTTTTGGAAGTTGAAGTGACATGTTCTTTCTCATTTTCATTTTCATACCCCCATCAATAATCATACTTCCAGAAGCTTTAGAGACAGAGGGGGGGACTTTATGGTCAAACATCAGCAATCATGGAGTAGGTAGTGAGAATCTTAAAAAAGAACACATATTAAACCATAATCTTTCTCTCTTTTTGCAGTTCCCTACAGAAGGAAGAGAAAAGAAAAGAAAAGGAGAAGAAACAAGAGTTTGCCACACGACTGTCGTCATCGTCGTGGTTGGAGGCGTGCAGGTATTTTTCTTTTTCTAACTCGCCCCATGAATCTCTAGCTTCAAGTCTGAATAACACACCATATGAACTCCAACTACGAACTTGACATTGTCTAGTATTACCGTAGTATGAAGAAGAAGAAAAGTGTGATATTGATGAAATAAGATCAGATATCATTTAATTACGAGGGACAAATTTTTCCTATTAATTGGGATACGAGTAATGTATATGTGCATGAGCATGGAGGTAAGAAGTTGGATCATTAATCGAAAAAAGGTGTCAACTGGAACATAATTTAACTATATACAACTTGGATCCAAATTCTACAGCATTATTATGCTGAATTTGGTAATTTCAATAAATTAAAAAGTCTACTAATTTACAATTAATTGATTTACAATTTTGTTATATCTTTAAAAATCTTTTTTTTTTTTCAAAAAGAAAAAAAAAAAAGAAAAGATGAAGCTTAATGTCTTAGTCTAATTATTAATTTTCTTTATGAAAAACCTTAAATAAAAAATATATGCTCAATCTTGTAATATATTTATATGTGATGGAATTTACCCAATCCATACAAGCTCTAGGGTTTCGAAAGGTTAAATGACCAAAACAACCCTCACATCTTAGCAATTCATGGGGGTATATCCGTCTTCACACATGATCAGAAGCCCTAGTTATGATACGCATTTTTCTCCTCCCCATTTGCATTGGTCGATTCTGCAGTCCGGCGGCTTGTCTACTATTCTTCATAGTTTTCTCTGATCACATCTTCCCTCGTTTAAGGTATCTATCGACTTCATTCTTCGATCCGTGTTGATCTCTCTTGTTCTTTGTTCTTTGTTCTGTTCAGAATCCATTGCATTTGCAGTTCGTGTTTGAATGCTCTGCGAGATGGTTGAAAAAGGACTATTTATTTTTCAGTTTTTTTTTTCTTTTTTTGTTTTTCTTTAGTCGTCAGTGTTTTCATTAACTAGAATGAATCTTTCGGTCGTTGCTTTTATGATTTCATTTTAAACGATTGAATTCTTACTGTGAAGAAGATTTTCGAGTAATTATTGAACGAAGAATCGTAGTACTGTTGAGTTTCGTATTAGGCAGATAATTATTGAGATTAGGGTTGTTTAGCATTGCAGTTCTTAGTCTTTCAGGAGCCTGTTTACGAGTTGAAAACCTTGCTATGCTATGCAGGCATATTCCTCGATGTCTTGGTTGAAAATATTGAAGTAATTAGTATTGTAACTTTCTGAAAGTTGGTCTCTTCCACACTTAACATTAGGTTGTTCTGGACTGACATCAATAAGCTTTTCTGTTTTCACTAGTTTACCCGTTCCTATACCTTAACATTGGGTTGTTCAAGTTGAGAAGTGGAGCTGTATAACTAGCAATTGGTGTACTTAGAAGGGGTAATTGTAAAGGAAATTTTTTTTTGGATTGTAAGATTTGTTATTGGTACTTTTGTGTAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTAACTCAAGTGAGAGTCAAGTTTCTCGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTGCTGGAGTCTGAGAGGGAAGCTAGAAGGTTGCGTTAACGTTGATGGGGACTCTGTCAAGGTCCCAGTTCTCCGATTTGCAGTTGTTGAATGTAGAATGGCTGTTTTCATATTCCCCTAATTGTGTGATTTTAGTGACTAGCTTGTCCAAGACATTTGGATCTAAGGCAGAATACGTGAACTGGATGAGTTATTTAATGGAGTTTTGAAAGCATCAATTTTGCTTATTATGGAGTTTATGTCAAATTTTGTGGTTGTTTACAGACTGCGTGGTATTTTTGGTGTTATTCAAGTCATGCATACAATGAAATTCTTGAGTTAAGTTGGTATGCTAACTTTCTTGGGAAG

mRNA sequence

ATGTGGTGTAGGGCAAGGGAAGGTGTTCCCTACAGAAGGAAGAGAAAAGAAAAGAAAAGGAGAAGAAACAAGAGTTTGCCACACGACTGTCGTCATCGTCGTGGTTGGAGGCGTGCAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTAACTCAAGTGAGAGTCAAGTTTCTCGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTGCTGGAGTCTGAGAGGGAAGCTAGAAGGTTGCGTTAACGTTGATGGGGACTCTGTCAAGGTCCCAGTTCTCCGATTTGCAGTTGTTGAATGTAGAATGGCTGTTTTCATATTCCCCTAATTGTGTGATTTTAGTGACTAGCTTGTCCAAGACATTTGGATCTAAGGCAGAATACGTGAACTGGATGAGTTATTTAATGGAGTTTTGAAAGCATCAATTTTGCTTATTATGGAGTTTATGTCAAATTTTGTGGTTGTTTACAGACTGCGTGGTATTTTTGGTGTTATTCAAGTCATGCATACAATGAAATTCTTGAGTTAAGTTGGTATGCTAACTTTCTTGGGAAG

Coding sequence (CDS)

ATGTGGTGTAGGGCAAGGGAAGGTGTTCCCTACAGAAGGAAGAGAAAAGAAAAGAAAAGGAGAAGAAACAAGAGTTTGCCACACGACTGTCGTCATCGTCGTGGTTGGAGGCGTGCAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTAACTCAAGTGAGAGTCAAGTTTCTCGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTGCTGGAGTCTGAGAGGGAAGCTAGAAGGTTGCGTTAA

Protein sequence

MWCRAREGVPYRRKRKEKKRRRNKSLPHDCRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 45  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 104
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 105 R 106
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 45  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 104
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 105 R 106
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 10  PYRRKRKEKKRRRNKSLPHDCRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 69
           P   + KEKKRRRNKSLPHD R RRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK
Sbjct: 12  PTEGREKEKKRRRNKSLPHD-RRRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 71

Query: 70  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106
           FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 72  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106

[Close]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 10  PYRRKRKEKKRRRNKSLPHDCRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 69
           P   + KEKKRRRNKSLPHD R RRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK
Sbjct: 15  PTEGREKEKKRRRNKSLPHD-RRRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 74

Query: 70  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106
           FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 75  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 109

[Close]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh10G002460 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-37
Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 10  PYRRKRKEKKRRRNKSLPHDCRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 69
           P   + KEKKRRRNKSLPHD R RRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK
Sbjct: 15  PTEGREKEKKRRRNKSLPHD-RRRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 74

Query: 70  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106
           FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 75  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 109

[Close]

BLAST of CmaCh10G002460 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-37
Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 10  PYRRKRKEKKRRRNKSLPHDCRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 69
           P   + KEKKRRRNKSLPHD R RRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK
Sbjct: 12  PTEGREKEKKRRRNKSLPHD-RRRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVK 71

Query: 70  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106
           FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 72  FLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106

[Close]

BLAST of CmaCh10G002460 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-37
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 10  PYRRKRKEKKRRRNKSLPHD-CRHRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRV 69
           P   + KEKKRRRNKSLPHD  R RRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRV
Sbjct: 3   PTEGREKEKKRRRNKSLPHDRRRRRRGWRRAGMESQIKHAVVVKVMGRTGSRGQVTQVRV 62

Query: 70  KFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 106
           KFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 63  KFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 99

[Close]

BLAST of CmaCh10G002460 vs. NCBI nr
Match: KAG7027430.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 40  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 99
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111

Query: 100 EARRLR 106
           EARRLR
Sbjct: 112 EARRLR 117

[Close]

BLAST of CmaCh10G002460 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 37  RRAGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLE 96
           RR  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLE
Sbjct: 62  RRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLE 121

Query: 97  SEREARRLR 106
           SEREARRLR
Sbjct: 122 SEREARRLR 130

[Close]

BLAST of CmaCh10G002460 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh10G002460 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh10G002460 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 41  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 100
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 101 ARRLR 106
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of CmaCh10G002460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	6.0e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	1.3e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	5.1e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	9.9e-20	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	9.9e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh10G002460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E226	1.4e-37	92.71	40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E336	1.4e-37	92.71	40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HTG7	2.5e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]
A0A0A0LPR2	2.5e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
A0A1S3CD61	2.5e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]

BLAST of CmaCh10G002460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922061.1	3.0e-37	92.71	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
XP_022922062.1	3.0e-37	92.71	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
KAG7023246.1	5.1e-37	91.75	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7027430.1	1.1e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KGN63808.2	1.8e-26	97.10	hypothetical protein Csa_014218 [Cucumis sativus]	[more]

BLAST of CmaCh10G002460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	9.5e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	9.5e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	3.6e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 44..104 e-value: 5.3E-32 score: 109.6
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 41..105
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 41..105 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 46..105 e-value: 1.6483E-31 score: 103.484
None	No IPR available	GENE3D	2.40.50.140		coord: 39..105 e-value: 2.8E-36 score: 125.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 41..105
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 96..104
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 41..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G002460.1	CmaCh10G002460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome