CmaCh09G011070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G011070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	extensin-3-like
Location	Cma_Chr09: 6056697 .. 6057146 (-)
RNA-Seq Expression	CmaCh09G011070
Synteny	CmaCh09G011070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

mRNA sequence

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

Coding sequence (CDS)

ATGGGTCCTCCGTCTATCATTGTCCATCTTGTTATCGCAGTTTGCGTGGTAGCTTTAAGCTCATCATCCACAACTGCTGAAGGCTACGACGACTACTATTCTCCTCCTCCACCTGTCAAATACTCTTCGCCGCCACCACCTGCCTACTACTCTCCTCCACCTCCTAAGAAGGACGACGAATACAAATCTCCTCCTCCACCGGAAGTAAAGAAGTCTCCTCCACCACCACCTCCACGAAAGAAGCCACCCCCTCCACCCGCACCAAAGAAATCTCCTCCGCCCCCACCTCCACGAAAGAAGTCGCCCCCTCCACCCGCACCAAAGAAATCTCCTCCTCCACCGCCGCCACGAAAGAAGTCTCCACCTCCGCCACCGCCAAAGAAGTCTCCTCCGCCACCCTCGCCCGTGTACAAGTCGCCTCCTCCCCCACCATCGCCTTACTACTACTAG

Protein sequence

MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY

Homology

[Close]

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL
Match: A0A6J1IK20 (extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.4e-56
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60
           MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE
Sbjct: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60

Query: 61  YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS 120
           YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS
Sbjct: 61  YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS 120

Query: 121 PPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPPPPKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPPPPKKSPPPPSPVYKSPPPPPSPYYY 149

[Close]

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL
Match: A0A6J1FDF6 (extensin-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443007 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.2e-39
Identity = 138/179 (77.09%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKS---------------PPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR 120
           PPKKDDEYKS               PPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR 120

Query: 121 KKSPPPPAPKKSPPPPPPRKKSPPPPP--------PKKSPPPPSPVYKSPPPPPSPYYY 150
           KKSPPPP+PKKSPPPPPP KKSPPPPP        PKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 KKSPPPPSPKKSPPPPPP-KKSPPPPPKKSPPQPEPKKSPPPPSPVYKSPPPPPSPYYY 178

[Close]

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL
Match: A0A6J1FDF9 (extensin-1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.4e-38
Identity = 129/156 (82.69%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPP 120
           PPKKDDEYKSPPPP  KKSPPP    KK PPPP  KKSPPPPPPRKK PPPPAPKKSPPP
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPP----KKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPP 120

Query: 121 PPPRKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPRKKSPPPP PKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPRKKSPPPPSPKKSPPPPSPVYKSPPPPPSPYYY 152

[Close]

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL
Match: A0A6J1F841 (extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.9e-37
Identity = 130/165 (78.79%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPP 120
           PPKKDDEYKSPPPP  KKSPPP    KK PPPP  KKSPPPPPPRKK PPPPAPKKSPPP
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPP----KKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPP 120

Query: 121 PPPR---------KKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPR         KKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPRKKSPPPPSPKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 161

[Close]

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL
Match: A0A6J1IP49 (extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476988 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 32  YYSPPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKS 91
           YYSPPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKS
Sbjct: 489 YYSPPPPVKYSSPPPPAYYSPPPPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKS 548

Query: 92  PPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPPPPKKSPPPPSPVYKSPPPP 144
           PPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPP PKKSPPPP P  KSPPPP
Sbjct: 549 PPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKSPPPP 600

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: XP_022976650.1 (extensin-3-like [Cucurbita maxima])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60
           MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE
Sbjct: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60

Query: 61  YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS 120
           YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS
Sbjct: 61  YKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPPPPPRKKS 120

Query: 121 PPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPPPPKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPPPPKKSPPPPSPVYKSPPPPPSPYYY 149

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: XP_022936365.1 (extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936368.1 extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936371.1 extensin-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-39
Identity = 138/179 (77.09%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKS---------------PPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR 120
           PPKKDDEYKS               PPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR 120

Query: 121 KKSPPPPAPKKSPPPPPPRKKSPPPPP--------PKKSPPPPSPVYKSPPPPPSPYYY 150
           KKSPPPP+PKKSPPPPPP KKSPPPPP        PKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 KKSPPPPSPKKSPPPPPP-KKSPPPPPKKSPPQPEPKKSPPPPSPVYKSPPPPPSPYYY 178

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: XP_022936367.1 (extensin-1-like isoform X3 [Cucurbita moschata] >XP_022936370.1 extensin-1-like isoform X3 [Cucurbita moschata] >XP_022936373.1 extensin-1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-38
Identity = 129/156 (82.69%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPP 120
           PPKKDDEYKSPPPP  KKSPPP    KK PPPP  KKSPPPPPPRKK PPPPAPKKSPPP
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPP----KKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPP 120

Query: 121 PPPRKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPRKKSPPPP PKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPRKKSPPPPSPKKSPPPPSPVYKSPPPPPSPYYY 152

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: XP_022936366.1 (extensin-like isoform X2 [Cucurbita moschata] >XP_022936369.1 extensin-like isoform X2 [Cucurbita moschata] >XP_022936372.1 extensin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 130/165 (78.79%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYS-------SPPPPAYYSPP 60
           M PPSIIVHLVIAV VVALS SST+AEGYD+YYSPPPPV YS       S PPP  YSPP
Sbjct: 1   MSPPSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPP 60

Query: 61  PPKKDDEYKSPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPRKKSPPPPAPKKSPPP 120
           PPKKDDEYKSPPPP  KKSPPP    KK PPPP  KKSPPPPPPRKK PPPPAPKKSPPP
Sbjct: 61  PPKKDDEYKSPPPPSPKKSPPP----KKTPPPPEVKKSPPPPPPRKKPPPPPAPKKSPPP 120

Query: 121 PPPR---------KKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 150
           PPPR         KKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY
Sbjct: 121 PPPRKKSPPPPSPKKSPPPPPPKKSPPPPSPVYKSPPPPPSPYYY 161

[Close]

BLAST of CmaCh09G011070 vs. NCBI nr
Match: XP_023535874.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-35
Identity = 133/178 (74.72%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 1   MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSP-------PPPAYYSPP 60
           MGPPSIIVHLVIAV V ALS S+T+AEGYDDYYSPPPPV YS P       PP  YYSPP
Sbjct: 1   MGPPSIIVHLVIAVFVAALSLSTTSAEGYDDYYSPPPPVYYSPPPPVKYSSPPRVYYSPP 60

Query: 61  PPKKDDEYKS---------------PPPPEVKKSPPPPPPRKKPPPPPAPKKSPPPPPPR 120
           PPKKDDE KS               PPPPEVKKSPPPPPPRKK PPPPAPKKSPPPPPPR
Sbjct: 61  PPKKDDEDKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRKKSPPPPAPKKSPPPPPPR 120

Query: 121 KKSPPPPAPKKSPPPPPPRKKSPPPPP--------PKKSPPPPSPVYKSPPPPPSPYY 149
           KKSPPPP+PKKSPPPPPP KKSPPPPP        PKKSPPPPSP YK PPPPPSPYY
Sbjct: 121 KKSPPPPSPKKSPPPPPP-KKSPPPPPKKSPPRSEPKKSPPPPSPEYKWPPPPPSPYY 177

The following BLAST results are available for this feature:

BLAST of CmaCh09G011070 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IK20	7.4e-56	100.00	extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1	[more]
A0A6J1FDF6	2.2e-39	77.09	extensin-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443007 PE=4 SV...	[more]
A0A6J1FDF9	2.4e-38	82.69	extensin-1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV...	[more]
A0A6J1F841	5.9e-37	78.79	extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1	[more]
A0A6J1IP49	1.3e-31	96.43	extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476988 PE=4 SV=1	[more]

BLAST of CmaCh09G011070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976650.1	1.5e-55	100.00	extensin-3-like [Cucurbita maxima]	[more]
XP_022936365.1	4.5e-39	77.09	extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936368.1 extensin-3-like ...	[more]
XP_022936367.1	5.0e-38	82.69	extensin-1-like isoform X3 [Cucurbita moschata] >XP_022936370.1 extensin-1-like ...	[more]
XP_022936366.1	1.2e-36	78.79	extensin-like isoform X2 [Cucurbita moschata] >XP_022936369.1 extensin-like isof...	[more]
XP_023535874.1	2.3e-35	74.72	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh09G011070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011070.1	CmaCh09G011070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0016020	membrane
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding