CmaCh09G010370 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G010370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 5356524 .. 5360183 (-)
RNA-Seq ExpressionCmaCh09G010370
SyntenyCmaCh09G010370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCTTGTTCAGAGCGATTCTTCCCAGTAAACAGCCGATCCAACTGTGTGGATGAAGTTGCAGCGTTGATCTTTTCGCTGAGGTACTATTTGTGTTCTGTATTCGTTTATTGAATTGTAATGCGTTTGAAAATGTTGTGTTTGGTAGTGAACAGAAGGTATTCGTGTGAAATTCTACTTTTAAGCTTTTTTCCTTTTGTTGAGTTTTGAATTAGGTGATTAGTTTGCGAGTATGTGATGTTGTCGTTATAGTTCGACTTCAGTTGGTTCTCATGGTTCGAGTTTGTGGAGCTTTACTTGATCGTTTCTTTAATGGCTAGCAGATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTACGGTTTGTGTAATGTTGAATGCTTTTCTTATTGCGTTGCCAGCCTTAAATGCTGCTCGTACTCTGGTTCCAGAATTTGTTACTCTGTGTATATTACAATGCAATATCTTGCTGAGAGAATGAACCTGAAACATCTGTACGTTCGGGTTGATTTTCTTTTGCAGATGGTTACGAGTGCATTATGGATATCAGGGTACTGTGGGATCTTGTGTGATGGAAAACTACTAAACTATGTACAATTTAAATTCCAAACACAGAACATGAAATTATTTACATTTCTTTCAATTGTATTTGTATTCATAACACCGTCATCTATCATGAGAAACCTGACTAATTTCAGGACAAACAATTTGGAGAAAGAATCACCTTTCAAGGTTACAAATTCTGACACTAAATCCTTGTAGCAATCTTATGTGTACACCATAAACACACCAACATTAATCATCCTCTTCATCAAGCTAGAAACCTTTCCAAGCATTAAGAATTTCATGGAAGATCTCAGCTATTAGGTCCCTTTCTGCATTTTGCAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAAACTTCACAAGATACTGCATGCAGCTGGTCTTCAGTTTTGGCAATTGATAAAGAGATGCATTTTGGAGTCTATCAAGAACATTTTTGGCATCAATATCTTCTAGCAGACTATCATGGCAGGCTTCTTTTAGGTCATCTATGTCATATTTATCAGCTGCATGAAGAAGTGCCAGTCTATGGACGAGAAACTCTTCATGTTGGATATTACCATACAGATAATTAAGAAGTGCCTGGCAAGCTTCAAAAGACATATCAGAGATGTTTATTGTAGATAGTTCCTTTTCTTTCAGGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGATGTGCTCTAACACTTCCGTCAGATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAGGAAGGTTCCCCACCCTGTTAGTAATTTGACAACAATGAGTTAAAAGAGGAGCGAAATAGGTATTCAATCGTTCTTTCTCTAACACAGGCGTTGATAACTATTTTTTCTTTATCTTAAGGCATAACTTTTGTCAACTGCTTCTGCGTTTGGCTTGTTTTTATCTATGATCCTCAGGTCCTGTGTTATTATAGCCAACCCCACAATCATCTTTGGAAGAAATATGCATGCACTAGCAACGGACAAATATTTATGTGCTTACCTCGGGTGAGGCAATCTTCAAGTCAAGGAATTCGACATCAATAATGAACTTTCCCGTTAATGGAACTTCAATTGGCCAAATAAAGTCGTCGTTGTTTTTAAGCTGTTTATCTATTATTTCTGCATAGAGGAAGATGAGGTAACGTTATTGGTCATTAGAGGAACTGAAGGTCATCAGGAAAAGAAGAAGTTTTTAATAAAAGTCCAACCACAAATCAAATTTCTGAACAGAGATTAGCCATGTTCCCCATCAAATAATTACAGATGTCTAATTTTATTTGGGTTAAGTATTTCAACTTTTATTCATGAATCAGAACCTGAAGATATAATTGAAGGTGAATGTCCTTTCAATCTGAAAACTAACTACTCTGTCTTGAAAATGTACAGGAAAGGAGAAGGAAATTACCTGGATGAATCAAAGCCTTCCGATCTCCTGCAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTCACGCTCGATATCTCTGGGTATAATTTAACATATAAAAGCTTGTTTTTTTCCACCGATAAATGCCTTCAATCCAAACAAAAATATTAGATATATACATCCCTATCCTGTTTGGATAGAGGAGAAAAAAAAACATGCAACATCTCCAATTAGAAGGGGGAAAACAGATTATTGTCATTATCTTCCATTTTCTCTTCTTTTCAAGAGATGGTTAGGATCTTATCCTCTCCTTTCATCACCACATACAAATTAGTTTCTCTTAGGATAAGTGGGTATCTATTTATTTAACCTTATTTCACAAAAATGTAGCTTTAAACGAAACTAATGAACAAAGAAAGATTAATTTACCATTTCCACTTGCCGATTTTGAAAGGATCGGATTTGCGGTAGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGGTTGACGAATTCTGCAGATATTACTCATAAACATATACAGAACAAAACCTATAAAGATAAATACTCTCTCTCTCTCGCTCTTTTCTGCACTGCTCACTGATCAAAGCATAAGAATATATGAGCGAACAAATGACGTTGATTTTTGTGTATTTATTGCTTTTGTTATCTCATGAAATTTGACGCTCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTTGAAGGTTTGATTCTGTGAAGGGGGTTTTGTTGTTTGGTTGATAGACGAAATGGGTTTTAAAACGCTTGTCTGTTGGCTTACACTGCACTTAATAGCGAGGGCGTATCTGGGTCGTGGGTGGTTGGATCGTAAAGCTAATGGATCATTTATTGGTCTTCTTTTATCTTTTTGGGTTTTCTTTCCCACATTAATATATGTCAATCTCGTTTCAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTCATCCTTTATGGGGACTTATTTGTCATTTACCGAGGAGTTGATTGTTGGTGAATCATGGAAACACCAGAAATAAGAAAAGCCCACTCTGCTTTCGTGGACCCCCGTCATGGAGGTATTTATCTTTTTTTCCTCACTCGATTTATCTTCTTGCTGTCCTTTTCTGGAGGCCAATGATGGTCTCCTGACGCATAGTAAGCCTCCGCAAAAGGCAACAACTAAATCCATGCTGTTCTTGAAAATGCTCTCATCTAGAATTCTTACCTCGATTAATTAATTTATGAGACGATTTAGTAATTGAAGTAAGAAATAAGTTTAGTTACAAATTTAGTCTTTAAATATCTTAAAACATAATTTTAGAAGATGTGTGTGCTGAGCTTTTAATTTTTTTTTTATTAAATTTTTATTTTTAAAAGCATTAATAAGCCTTACAGCTTTGGATTATTTCTACTGAAAACTTAA

mRNA sequence

ATGGACTCTTGTTCAGAGCGATTCTTCCCAGTAAACAGCCGATCCAACTGTGTGGATGAAGTTGCAGCGTTGATCTTTTCGCTGAGGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGATGTGCTCTAACACTTCCGTCAGATGCATTAATTATGATATCGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGCATTAATAAGCCTTACAGCTTTGGATTATTTCTACTGAAAACTTAA

Coding sequence (CDS)

ATGGACTCTTGTTCAGAGCGATTCTTCCCAGTAAACAGCCGATCCAACTGTGTGGATGAAGTTGCAGCGTTGATCTTTTCGCTGAGGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGATGTGCTCTAACACTTCCGTCAGATGCATTAATTATGATATCGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTGCTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGCATTAATAAGCCTTACAGCTTTGGATTATTTCTACTGAAAACTTAA

Protein sequence

MDSCSERFFPVNSRSNCVDEVAALIFSLRSCENMLWKTGDREARIARCALTLPSDALIMISVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSINKPYSFGLFLLKT
Homology
[Close]
BLAST of CmaCh09G010370 vs. NCBI nr
Match: KAG7037301.1 (hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 59  MISVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPS 115
           M  VQEARFSILH ARRDVVSTLYAESLILANARAAVIS MQPK+PSR CSPDFPS
Sbjct: 1   MCFVQEARFSILHCARRDVVSTLYAESLILANARAAVISWMQPKMPSRKCSPDFPS 56

[Close]
BLAST of CmaCh09G010370 vs. NCBI nr
Match: KAG7024998.1 (hypothetical protein SDJN02_13818, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 1  MDSCSERFFPVNSRSNCVDEVAALIFSLR 30
          MDSCSERFFPVNSRSNCVD V  LIFSLR
Sbjct: 50 MDSCSERFFPVNSRSNCVDGVVVLIFSLR 78

The following BLAST results are available for this feature:
BLAST of CmaCh09G010370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G010370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G010370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037301.13.5e-1689.29hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7024998.11.8e-0489.66hypothetical protein SDJN02_13818, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh09G010370 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G010370.1CmaCh09G010370.1mRNA