CmaCh09G005470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G005470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr09: 2474971 .. 2475279 (-)
RNA-Seq Expression	CmaCh09G005470
Synteny	CmaCh09G005470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

mRNA sequence

ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

Coding sequence (CDS)

ATGGGAATCAAATGGCGCAATTCACGCAGTCAAAGCATCAGGTTAGGGCAGAACTGTGGCTCTTCGAATAAACAAGAAAGCAAACGGCTCCTCGGATGGCAGATTTTGTGGCAGAAATTCAAGAAGGAGAAGATCAGAATCTTCAGTTGTTCTTCGGCTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGGGCTCTGATTCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA

Protein sequence

MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD

Homology

[Close]

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.3e-47
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MGIKWRNSRSQSIRLGQ+CGSSN+QESKRL GWQILWQKFKKEK RIFSCSS ELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAYRLNFEQENWGSD DDLCRSFSARFADPSIVSRSFRLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.1e-37
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MG+KWRNSRSQSIRLGQ+C SSN+QESKR LGWQILW+K KKEK ++FSCSS ELRSSYN
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKR-LGWQILWRKLKKEKRKMFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAY LNF++ENW S+ D+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL
Match: A0A5N5I1S5 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034369 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSA--ELRS 60
           MGI+ WRNSRSQSIRLG N    +   +K   GWQ  W++FK E+ +IF  S+   + ++
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNY-NKSQPGWQKFWKRFKIERKKIFGSSTVMPQAQA 60

Query: 61  SYNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFR-LLD 103
           SY+P+ Y  NF+Q     + D+L RSFSARFADPS V    R LLD
Sbjct: 61  SYDPDTYSKNFDQGTQWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL
Match: A0A540LRN7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025286 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQNC---GSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSA--E 60
           MGI+ WRNSRSQSIRLG N    G+ NK ++    GWQ  W++FK E+ + F  S+   +
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPGNYNKSQT----GWQKFWKRFKIERKKNFGSSTVTPQ 60

Query: 61  LRSSYNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFR-LLD 103
            ++SY+P  Y  NF+Q     + D+L RSFSARFADPS V    R LLD
Sbjct: 61  AQTSYDPETYSKNFDQGTGWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL
Match: A0A5N5HP14 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034370 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSA--ELRS 60
           MGI+ WRNSRSQSIRLG N    +   +K   GWQ  W++FK E+ + F  S+   + ++
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNY-NKSQPGWQKFWKRFKIERKKNFGSSTVTPQAQT 60

Query: 61  SYNPNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFR-LLD 103
           SY+P  Y  NF+Q     + D+L RSFSARFADPS V    R LLD
Sbjct: 61  SYDPETYSKNFDQGTGWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CmaCh09G005470 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MGIKWRNSRSQSIRLGQ+CGSSN+QESKRLLGWQILWQKFKKEK RIFSCSS ELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAYRLNFEQENWGSD DDLCRSFSARFADPSIVSRSFRLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CmaCh09G005470 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 6.8e-47
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MGIKWRNSRSQSIRLGQ+CGSSN+QESKRL GWQILWQKFKKEK RIFSCSS ELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAYRLNFEQENWGSD DDLCRSFSARFADPSIVSRSFRLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CmaCh09G005470 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 4.4e-46
Identity = 95/102 (93.14%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
           MGIKWRNSRSQSIRLGQ+CGS N+QESKRL GWQILWQKFKKEK RIFSCSS ELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
           PNAYRLNFEQENWGSD DDLCRSFSARFADPSIVSRSFRLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CmaCh09G005470 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.4e-37
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1    MGIKWRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSYN 60
            MG+KWRNSRSQSIRLGQ+C SSN+QESKR LGWQILW+K KKEK ++FSCSS ELRSSYN
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKR-LGWQILWRKLKKEKRKMFSCSSVELRSSYN 1089

Query: 61   PNAYRLNFEQENWGSDSDDLCRSFSARFADPSIVSRSFRLLD 103
            PNAY LNF++ENW S+ D+L RSFSARFADPSIVSR+ RLLD
Sbjct: 1090 PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of CmaCh09G005470 vs. NCBI nr
Match: KAF3446462.1 (hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis])

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-13
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQNCGSSNKQESKRLLGWQILWQKFKKEKIRIFSCSSAELRSSY 60
           MGIK W  S SQSIRLGQN   SN    +   GW+ +W+K K++K +    S   L++SY
Sbjct: 1   MGIKEWYKSGSQSIRLGQNYMQSNNDREQIQDGWRKVWRKIKRDKNKKVFSSPVTLQASY 60

Query: 61  NPNAYRLNFEQENWGSDSDDLCRSFSARFADPS-IVSRSFRLLD 103
           +PN Y  NF+Q    ++ D+L RSFSARFADP+ I   +F LLD
Sbjct: 61  DPNTYSKNFDQGMVWTEPDNLSRSFSARFADPNKIFPTTFSLLD 104

The following BLAST results are available for this feature:

BLAST of CmaCh09G005470 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G005470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7R9	3.3e-47	94.12	uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A0A0LJH9	3.1e-37	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1	[more]
A0A5N5I1S5	1.6e-12	49.06	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]
A0A540LRN7	2.6e-12	48.62	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025286 PE=4 SV=1	[more]
A0A5N5HP14	1.3e-11	48.11	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]

BLAST of CmaCh09G005470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536137.1	2.3e-47	95.10	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
XP_022936244.1	6.8e-47	94.12	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	4.4e-46	93.14	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60340.2	6.4e-37	79.41	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
KAF3446462.1	4.9e-13	48.08	hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]	[more]

BLAST of CmaCh09G005470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 7..95
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 7..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G005470.1	CmaCh09G005470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity