CmaCh09G002570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G002570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 1079749 .. 1082523 (-)
RNA-Seq ExpressionCmaCh09G002570
SyntenyCmaCh09G002570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAGTCGGTATTGGGGAGAACTACCAGCTTTGTTATCCTCTACGAACAGATCCATTGGCTCATGACCGATCCACAAGTGTTGGCTTGTATACTGTCTTCACGAACTGATGTAGTAAGTTATGTTTAATAACTTTGGTTTAGTTGTTTTGTTGTCAGATCTTATGGTTCATCTCTTGTATTAAATACTTTTGAATCATAATAAACTGCCTTCACCATGTTCTGGGAGAATTCCTTCCTTCAGAAGGCCGGCAACATGATAATGCCCGGTATCACAATCGGCATGGAGCAGCAAAAGAACGTTGCCATTTTGCCTATTCAAATGTTTGATCCATTTATTGATCTGCATATGATTCTGATCATCATTGGCCATGTGGAAATTGCCACTGCAGTTTGTTTACGAGACTCTATGTTAAGGAGACAAAGGTAGCTTTTACAGCTTGCTTTGATTTGCTATATGTTCTATATACATTTGTCATTATTTTCAGTGGAAATGTTACAGGAGGGAGGGGAACTCATTTGTTCACTGGAAAATCGAGGTTTCCTCAATTCTGCTGGTGAAGGTATTCTTAACTTGAAGCATGTGTTTACTTTCTCTGGATTATGATGAAGTTGTACCAAACGGAAAACTAACATCTGGTTGAATGGAGTTGTGCAATGGAATCTTCCCCGAAATGTTTGTTATTGCTCTAGTTGTTAATTGCATTGTTGATACATGATATCTGTTCGCGTTATCAACAATTATCATTAGAACTGCCCGTTTCCCACATCTATGGGAGTATTTTTAATGCATTTGAGCTGTACAGAGTTGCAGAATGCTGACCTACAAGTCCTTTTCTCTGCGGTCAAACATTACAGCTCCGGTTGCTTGTATACAAAACAATTTTGATTGAAGTTGCAACATAATATAAGAGAGACGGGGTAAGGCCGTCAACCCTATTAATAATTGCTTGAATTGATACCTATGCTTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCAGAAGAAAAATTAATGAGGTGGTTGGATTGGATTAGATCTCATAGGTGCAGTAATTCTTGGGTAGAACAAAAGTGTGGTTGTTGTATCAATCTTTTTCGCAGTACAATATCGTTGTGGTTTCTGAAATGGTTGATATTTTAGGGCGCTTTTGTTCCTGGTTTTGATGAAATCATGATTCAGTTTCAAAGGAAGAACCATCTTAATTTAAATTTTAGAGTTCACTTTTGGTCTTTGTGAGGTCTGTTTGTTTGCCAGTTTAACTTGTACGTATATCAAGTAACGCTACAATGTCTATACAACCACTAACATTTTGTGCCAGCTGCATAGAAGAGTACCATGTGTAATGGAGAAAGTGTCAAGTGAAGACCATACTAGATACCCTTATCATCCCAGGATTGAAGGCTGTTCATAATTGAATGTGATATTTTATTACAAAACAATTCGGGGTTGGGTTTACTTTTGGTCAAAATGTCCTTTAATTGAGCATCTTTTTAGTTCTTGACTTCAAGCATTCATCTTGCTAGAATCTTTTTTGGCATATCGATGTTCTAACATGAATATAGCAACGAAGAATGTTGAATGGAATATCAGGCATTGTTCCTTTTTGGGTAGAAATAAAGTGCCTTTGACACAGGTCGAATGGGCATCTATGATTTCTAACTAAATGCCAAGGCCCAATCAATACTACGCTTAGCTGCATATGATTTATGAATCAACTAATTAATTATTTTGTAACGACACAATCGAACTTATTAATTAATGACTCCTCTGAGACATTCTTCTTAAAATCATAAATAATACATCAACTGAAAGCCATCGCTTTCAAGTTTTACATCAGTCAGGACTCCCGTCACATTTAAACTTACCTTTGATTGCCCGCCACTATTTAAAAATGGTGATAAGGAGATCTAAGAATAGTTCATAATTGAAGAACAAGAATAGATAAAACGCAGTTCTCAAATATAATCATAAATCTGCAACTCCTGAAAGTTTGATCCGCCATATGAGGTAGTTTGAATAATTTGATTGCCAATCTATTTTCAAAAGTGATTGCTAAAGTTGTTATTTGTTAGTTTAAATAAGGTTGCAATCTATGTTATTATAGTTATGAGAAGAACTCCCTGTTGTGATTGAGAGATTACTACATTTACATGTCGGATTGGGCCACGTTTCTAGGTGAAAGATGTGATAAAGGGCATTGGAGTTGTCATTTGCGGCTGGGCTTGAGCAACATGCACGGAAGGTGTTTGTTATAATGCCAAATCCAAAGAGGTGGAGAATGGTGGTAGAGGACCAAGCCACGGGTCTAGATTATTATCATTGGAGAAGTACACACTGCGTTCTATCCCCCTAATTTCTGTAGCTGTCGACGTATATTTAGCTGCTTCCGTAATGGGGGCATCTTCCCAACATTGTGTTTCTTTCGCCAGAACCAGTTGCCCCATCTAATGTCCTATTATCCACGCTTTGAAAGTGATAATAAAGGTGCAATAAGACATTATCCTTTATTATATAGGGTATTGTTAGCTTGGCTTTTATGTGGCTGCTTTCAGGTTCAAAGATTGCAGATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGATCTCCATATTGCGTGGGTGTGGTTGTCTTTGGTCACTCTTAG

mRNA sequence

ATGTTTCAGTCGGTATTGGGGAGAACTACCAGCTTTGTTATCCTCTACGAACAGATCCATTGGCTCATGACCGATCCACAAGTGTTGGCTTGTATACTGTCTTCACGAACTGATGTAAAGGCCGGCAACATGATAATGCCCGGTATCACAATCGGCATGGAGCAGCAAAAGAACGTTGCCATTTTGCCTATTCAAATGTTTGATCCATTTATTGATCTGCATATGATTCTGATCATCATTGGCCATGTGGAAATTGCCACTGCAGTTTGTTTACGAGACTCTATGTTAAGGAGACAAAGGAGGGAGGGGAACTCATTTGTTCACTGGAAAATCGAGGTTTCCTCAATTCTGCTGGTGAAGAACCAGTTGCCCCATCTAATGTCCTATTATCCACGCTTTGAAAGTGATAATAAAGGTTCAAAGATTGCAGATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGATCTCCATATTGCGTGGGTGTGGTTGTCTTTGGTCACTCTTAG

Coding sequence (CDS)

ATGTTTCAGTCGGTATTGGGGAGAACTACCAGCTTTGTTATCCTCTACGAACAGATCCATTGGCTCATGACCGATCCACAAGTGTTGGCTTGTATACTGTCTTCACGAACTGATGTAAAGGCCGGCAACATGATAATGCCCGGTATCACAATCGGCATGGAGCAGCAAAAGAACGTTGCCATTTTGCCTATTCAAATGTTTGATCCATTTATTGATCTGCATATGATTCTGATCATCATTGGCCATGTGGAAATTGCCACTGCAGTTTGTTTACGAGACTCTATGTTAAGGAGACAAAGGAGGGAGGGGAACTCATTTGTTCACTGGAAAATCGAGGTTTCCTCAATTCTGCTGGTGAAGAACCAGTTGCCCCATCTAATGTCCTATTATCCACGCTTTGAAAGTGATAATAAAGGTTCAAAGATTGCAGATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGATCTCCATATTGCGTGGGTGTGGTTGTCTTTGGTCACTCTTAG

Protein sequence

MFQSVLGRTTSFVILYEQIHWLMTDPQVLACILSSRTDVKAGNMIMPGITIGMEQQKNVAILPIQMFDPFIDLHMILIIIGHVEIATAVCLRDSMLRRQRREGNSFVHWKIEVSSILLVKNQLPHLMSYYPRFESDNKGSKIADAIHLKDANRIDCRSPYCVGVVVFGHS
Homology
[Close]
BLAST of CmaCh09G002570 vs. NCBI nr
Match: KAG6591398.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-22
Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 0 

Query: 53  MEQQKNVAILPIQMFDPFIDLHMILIIIG-----HVEIATAVCLRDSMLRRQRREGNSFV 112
           MEQ+KNVAILPIQMFDPFIDLHMILIIIG     H  + T + ++++  +  R EGNS  
Sbjct: 552 MEQRKNVAILPIQMFDPFIDLHMILIIIGPCGNCHCSLFTRLYVKETKWKCYRGEGNS-- 611

Query: 113 HWKIEVSSILLVKNQLPHLMSYYPRFESDNKGSKIADAIHLKDANRIDCRSPYCVGVVVF 171
              +E    L                 S  +GSKIA+AIHLKDANRIDC SPYCVGVVVF
Sbjct: 612 ---LENRGFL----------------NSAGEGSKIANAIHLKDANRIDCSSPYCVGVVVF 653

[Close]
BLAST of CmaCh09G002570 vs. NCBI nr
Match: XP_023534818.1 (uncharacterized protein LOC111796447 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-16
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 53  MEQQKNVAILPIQMFDPFIDLHMILIIIG-----HVEIATAVCLRDSMLRRQRREGNSFV 112
           MEQ+KNVAILPIQMFDPFIDLHMILIIIG     H  + T + ++++  +  RR GNSFV
Sbjct: 1   MEQRKNVAILPIQMFDPFIDLHMILIIIGPCGNCHCSLFTRLYVKETKWKCYRRGGNSFV 60

Query: 113 HWKIEVSSILLVKN 122
           HWKIEVSSILLVK+
Sbjct: 61  HWKIEVSSILLVKS 74

[Close]
BLAST of CmaCh09G002570 vs. NCBI nr
Match: XP_023534819.1 (uncharacterized protein LOC111796447 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 53 MEQQKNVAILPIQMFDPFIDLHMILIIIG 82
          MEQ+KNVAILPIQMFDPFIDLHMILIIIG
Sbjct: 1  MEQRKNVAILPIQMFDPFIDLHMILIIIG 29

The following BLAST results are available for this feature:
BLAST of CmaCh09G002570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G002570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G002570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591398.12.6e-2255.28F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023534818.14.7e-1667.57uncharacterized protein LOC111796447 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023534819.11.8e-0496.55uncharacterized protein LOC111796447 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh09G002570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G002570.1CmaCh09G002570.1mRNA