CmaCh09G001840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G001840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr09: 774269 .. 774628 (-)
RNA-Seq Expression	CmaCh09G001840
Synteny	CmaCh09G001840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGACGGATTATGAAGAGCCAAATGAAGGCGAGGTATTCTCAGCTGGTCAACAGCAACTGTTGGCAGTATCGAAGTTGAAGGACCTGAAGGTCAAGAACTATTTATTTCAGTCCATTGATAGGACTATCTTGAAAACAATGCTTCAAAAGAAGACATCCATGGAAGTTTGGGATTCTATGAGGAGAAAGTATCAAGGCTCAACGAGAGAAAAGCGTGCTCAACTTCAAGCTGTTAGAAGAGACTTTGAAATTCTCCAAATGCAAGAAGCTACTACAAATTTGGGAATTGAAATACCTGATTTTATACAGGTCGAGTGGGCCTTACAGTTTGCTTGCTATCCGGATCAAGGATAA

mRNA sequence

ATGGTGGAGACGGATTATGAAGAGCCAAATGAAGGCGAGGTATTCTCAGCTGGTCAACAGCAACTGTTGGCAGTATCGAAGTTGAAGGACCTGAAGGTCAAGAACTATTTATTTCAGTCCATTGATAGGACTATCTTGAAAACAATGCTTCAAAAGAAGACATCCATGGAAGTTTGGGATTCTATGAGGAGAAAGTATCAAGGCTCAACGAGAGAAAAGCGTGCTCAACTTCAAGCTGTTAGAAGAGACTTTGAAATTCTCCAAATGCAAGAAGCTACTACAAATTTGGGAATTGAAATACCTGATTTTATACAGGTCGAGTGGGCCTTACAGTTTGCTTGCTATCCGGATCAAGGATAA

Coding sequence (CDS)

ATGGTGGAGACGGATTATGAAGAGCCAAATGAAGGCGAGGTATTCTCAGCTGGTCAACAGCAACTGTTGGCAGTATCGAAGTTGAAGGACCTGAAGGTCAAGAACTATTTATTTCAGTCCATTGATAGGACTATCTTGAAAACAATGCTTCAAAAGAAGACATCCATGGAAGTTTGGGATTCTATGAGGAGAAAGTATCAAGGCTCAACGAGAGAAAAGCGTGCTCAACTTCAAGCTGTTAGAAGAGACTTTGAAATTCTCCAAATGCAAGAAGCTACTACAAATTTGGGAATTGAAATACCTGATTTTATACAGGTCGAGTGGGCCTTACAGTTTGCTTGCTATCCGGATCAAGGATAA

Protein sequence

MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWDSMRRKYQGSTREKRAQLQAVRRDFEILQMQEATTNLGIEIPDFIQVEWALQFACYPDQG

Homology

[Close]

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL
Match: A0A6J1KMP2 (uncharacterized protein LOC111496684 OS=Cucurbita maxima OX=3661 GN=LOC111496684 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-35
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV S G+QQLLA SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETSYEEPNEGEVLSDGRQQLLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           SMRRKYQGSTR KRAQLQAVRRDFEILQMQ+  T
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQMQQGET 134

[Close]

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL
Match: A0A6J1IP26 (uncharacterized protein LOC111479253 OS=Cucurbita maxima OX=3661 GN=LOC111479253 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV SA +QQLL  SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETGYEEPNEGEVLSADRQQLLTASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           SMRRKYQGSTR KRAQLQAVRRDFEILQMQ+  T
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQMQKGET 134

[Close]

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL
Match: A0A6J1IKL3 (uncharacterized protein LOC111474837 OS=Cucurbita maxima OX=3661 GN=LOC111474837 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV SA +QQLLA SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETGYEEPNEGEVLSADRQQLLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQE 92
           SMRRKYQGSTR KRAQLQAVRRDFEILQ Q+
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQTQK 131

[Close]

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL
Match: A0A3Q7Y1T6 (uncharacterized protein LOC113787151 OS=Cicer arietinum OX=3827 GN=LOC113787151 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.7e-23
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           ++ETDY EP  GEV +  Q+Q LA  KL DLKVKNYLFQ+ID++ILKT++QK TS ++WD
Sbjct: 37  LIETDYVEPTRGEVLNGAQRQALADLKLTDLKVKNYLFQAIDKSILKTIIQKNTSKQLWD 96

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           S++ KYQGS R +R QLQ +RRDFEIL+M+E  T
Sbjct: 97  SLKIKYQGSERVQREQLQRLRRDFEILEMKENET 130

[Close]

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL
Match: A0A2P6QV05 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0409151 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 57/90 (63.33%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           +VET Y EP EGEV +A Q++ L   KLKD KVKNYLFQSID++ILKT++QK TS  +WD
Sbjct: 41  LVETGYTEPAEGEVMTAAQRKTLEELKLKDFKVKNYLFQSIDKSILKTIIQKDTSKHLWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQ 91
           SM+RKYQG+ R +R+QLQ +RR+FEIL+M+
Sbjct: 101 SMKRKYQGNKRVQRSQLQTLRREFEILEMK 130

[Close]

BLAST of CmaCh09G001840 vs. NCBI nr
Match: XP_023002926.1 (uncharacterized protein LOC111496684 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 5.4e-35
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV S G+QQLLA SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETSYEEPNEGEVLSDGRQQLLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           SMRRKYQGSTR KRAQLQAVRRDFEILQMQ+  T
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQMQQGET 134

[Close]

BLAST of CmaCh09G001840 vs. NCBI nr
Match: XP_022979572.1 (uncharacterized protein LOC111479253 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV SA +QQLL  SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETGYEEPNEGEVLSADRQQLLTASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           SMRRKYQGSTR KRAQLQAVRRDFEILQMQ+  T
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQMQKGET 134

[Close]

BLAST of CmaCh09G001840 vs. NCBI nr
Match: XP_022975469.1 (uncharacterized protein LOC111474837, partial [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           MVET YEEPNEGEV SA +QQLLA SKLKDLKVKNYLFQSIDRTIL+TMLQKKTS E+WD
Sbjct: 41  MVETGYEEPNEGEVLSADRQQLLAASKLKDLKVKNYLFQSIDRTILETMLQKKTSKEIWD 100

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQE 92
           SMRRKYQGSTR KRAQLQAVRRDFEILQ Q+
Sbjct: 101 SMRRKYQGSTRVKRAQLQAVRRDFEILQTQK 131

[Close]

BLAST of CmaCh09G001840 vs. NCBI nr
Match: XP_023526391.1 (uncharacterized protein LOC111789905 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-23
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 13  EVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWDSMRRKYQGSTRE 72
           E F   +QQL A SKLKDLKVKNYLFQ IDRTIL+TMLQKKTS E+WDSMRRKYQ STR 
Sbjct: 37  EFFDMVEQQLTA-SKLKDLKVKNYLFQFIDRTILETMLQKKTSKEIWDSMRRKYQDSTRV 96

Query: 73  KRAQLQAVRRDFEILQMQEATT 95
           KRAQLQAVRRDFEILQMQ+  T
Sbjct: 97  KRAQLQAVRRDFEILQMQKGET 117

[Close]

BLAST of CmaCh09G001840 vs. NCBI nr
Match: XP_027191521.1 (uncharacterized protein LOC113787151 [Cicer arietinum])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MVETDYEEPNEGEVFSAGQQQLLAVSKLKDLKVKNYLFQSIDRTILKTMLQKKTSMEVWD 60
           ++ETDY EP  GEV +  Q+Q LA  KL DLKVKNYLFQ+ID++ILKT++QK TS ++WD
Sbjct: 37  LIETDYVEPTRGEVLNGAQRQALADLKLTDLKVKNYLFQAIDKSILKTIIQKNTSKQLWD 96

Query: 61  SMRRKYQGSTREKRAQLQAVRRDFEILQMQEATT 95
           S++ KYQGS R +R QLQ +RRDFEIL+M+E  T
Sbjct: 97  SLKIKYQGSERVQREQLQRLRRDFEILEMKENET 130

The following BLAST results are available for this feature:

BLAST of CmaCh09G001840 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G001840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMP2	2.6e-35	87.23	uncharacterized protein LOC111496684 OS=Cucurbita maxima OX=3661 GN=LOC111496684...	[more]
A0A6J1IP26	1.7e-34	86.17	uncharacterized protein LOC111479253 OS=Cucurbita maxima OX=3661 GN=LOC111479253...	[more]
A0A6J1IKL3	1.1e-33	87.91	uncharacterized protein LOC111474837 OS=Cucurbita maxima OX=3661 GN=LOC111474837...	[more]
A0A3Q7Y1T6	8.7e-23	61.70	uncharacterized protein LOC113787151 OS=Cicer arietinum OX=3827 GN=LOC113787151 ...	[more]
A0A2P6QV05	3.3e-22	63.33	Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4...	[more]

BLAST of CmaCh09G001840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002926.1	5.4e-35	87.23	uncharacterized protein LOC111496684 [Cucurbita maxima]	[more]
XP_022979572.1	3.5e-34	86.17	uncharacterized protein LOC111479253 [Cucurbita maxima]	[more]
XP_022975469.1	2.3e-33	87.91	uncharacterized protein LOC111474837, partial [Cucurbita maxima]	[more]
XP_023526391.1	2.8e-23	80.49	uncharacterized protein LOC111789905 [Cucurbita pepo subsp. pepo]	[more]
XP_027191521.1	1.8e-22	61.70	uncharacterized protein LOC113787151 [Cicer arietinum]	[more]

BLAST of CmaCh09G001840 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 28..93 e-value: 7.2E-8 score: 32.3
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..91
None	No IPR available	PANTHER	PTHR34222:SF47	SUBFAMILY NOT NAMED	coord: 2..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G001840.1	CmaCh09G001840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding