CmaCh09G000370 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G000370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGlyceraldehyde-3-phosphate dehydrogenase Bic isoform X1
LocationCma_Chr09: 165252 .. 166383 (-)
RNA-Seq ExpressionCmaCh09G000370
SyntenyCmaCh09G000370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAAAGGTGTAATAAAGGTGATGGAACCATGTTGTAGTATTTCATTCATTTCTGTCCCTTTTCAAAGGTCATTAGCTTTAGAATATTGCCTTCAAATGTTATATACGAATTCAAAACCAGCATTGTACATTCATGCACAAGAACAACATAGACTCAAAACAGCCAGCAAGAGACATGATGCCTAAGCTTCAAAAACTTTGCACTCTTTGTCAGCTGGGTTAGTCTGGCAGTAATCCTCCAATGGGTCTCCGCTCTTTCCTGATCCCGCTCCCGGCCATTCGCTTGCCACCAAATGAGCCAAGTCGACAACTCTTTGGCTGGAGGCAACAAAAAAACAAATGAAACTTAATATACTTTGGCTTCTACTATTGAGGGAACATGAATTCCCATGAATTAAAGTCCTCACCTGTATCCCCATTCGTTGTCGTACCAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGGTGCGATGCATCTAAGAGTCTCTAAAAATAATCCCAAGAACATGACAAGAGGTCATAAGATTTTCTCTTTTTCAAGAATCATTTATCAGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

mRNA sequence

ATGAGGAAGAAAGGTGTAATAAAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

Coding sequence (CDS)

ATGAGGAAGAAAGGTGTAATAAAGGCAACGACCTTGAGCATATCATCTCCCATTACCATTGTTAGCGAAGAGTCAATTGTGGAGGAAACATCAGTACACTTGAAGTCCACAGACACAAGAGGGATATCGCATACAGCTAAAACTCCCTTCAACGGTCCATCAGCTGCCTTTCTGAAGGCAGCATTGACATCGTCGGCAGAGATGCCTTTCTTCTCAATGTTCACAACGAGGTCGACAACTGAAACGTTTGGAGTAGGCACACGAAGTGCAATTCCATTGAGCTTGCCCTTAAGCTGGGGCAACACAAGGGACACAGCCTTTGCTGCACCCGTGCTTGTAGGGACAATGTTCAAAGCTGCCGCCCTGGCTCGCCTCAAGTCACGATCAATGTCATGGTGCATTCATAATGTGATGTTCATGTCTTTTCCTTACCTGGTCTCCAGTGTAGGAGTGAGTGGTTGTCATGGTTCCCTTCACAATGCCTGGATTCAATCATATATCAAATGGTTAAAATCAGGAACCAGTGCCAGTCGGCCAAAACGAAACCAATTGCTTACCAAATTCCTCGTCGATAATCTTCACAAAAGGAGCAAGGCAATTGGTGGTGCAAGAAGCATTGCTGCATAA

Protein sequence

MRKKGVIKATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKSRSMSWCIHNVMFMSFPYLVSSVGVSGCHGSLHNAWIQSYIKWLKSGTSASRPKRNQLLTKFLVDNLHKRSKAIGGARSIAA
Homology
BLAST of CmaCh09G000370 vs. ExPASy TrEMBL
Match: A0A2P2JS94 (Glyceraldehyde-3-phosphate dehydrogenase Bic isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-41
Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           +ATTL+ISSP+T+V+EESIVEETS+  KSTDTRG S T+  PFNGPSAAFL AALTSSAE
Sbjct: 21  QATTLTISSPMTMVNEESIVEETSLQRKSTDTRGSSQTSSIPFNGPSAAFLNAALTSSAE 80

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 127
           MPFFS FTTRSTT+T GVGTR A+PLSLP SWG+TRDTA AAPVLVGTM +AAALA L+S
Sbjct: 81  MPFFSTFTTRSTTDTLGVGTRKAMPLSLPFSWGSTRDTALAAPVLVGTMLRAAALALLRS 140

Query: 128 R 129
           R
Sbjct: 141 R 141

BLAST of CmaCh09G000370 vs. ExPASy TrEMBL
Match: A0A6N2M8K3 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS336608 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.7e-30
Identity = 97/197 (49.24%), Postives = 116/197 (58.88%), Query Frame = 0

Query: 14  ISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPFFSM 73
           +SSPITIVS+ES V++TS+HLKST+T G S T + P +  SA  LKAA TSSA++ F   
Sbjct: 1   MSSPITIVSDESTVDDTSLHLKSTETSGSSQTDRIPLSSFSALSLKAAFTSSAKV-FLET 60

Query: 74  FTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKSRSMSWC 133
           +TTRSTTETFGVGTR AIPLS PL  G TR TA AAPV VGT+ +AAALARL+SR     
Sbjct: 61  WTTRSTTETFGVGTRRAIPLSFPLREGRTRATALAAPVEVGTILRAAALARLRSR----- 120

Query: 134 IHNVMFMSFPYLVSSVGVSGCHGSLHNAWIQSYIKW---LKSGTSASRPKRNQLLTKFLV 193
                                       W+ S   W   +K    A       L+TK LV
Sbjct: 121 ----------------------------WLASSSLWSPRVKGKVPA------DLITKLLV 157

Query: 194 DNLHKRSKAIGGARSIA 208
            NL K S+A+ GARSIA
Sbjct: 181 KNLDKGSQAVSGARSIA 157

BLAST of CmaCh09G000370 vs. ExPASy TrEMBL
Match: A5BUM4 (RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_031969 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           ++TTL++SSPIT+V +ES VE+TS HLKSTDT G SH    P +  SA FLKAA TSSA+
Sbjct: 358 RSTTLTMSSPITMVRDESTVEDTSEHLKSTDTSGSSHIDGIPLSSFSALFLKAAFTSSAK 417

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 127
           +      TTRSTTET  VGTR A+PLS PL  G TR TAFAAPV VGTM + AA  RL++
Sbjct: 418 VSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAFAAPVEVGTMLRTAARTRLRT 477

Query: 128 R 129
           R
Sbjct: 478 R 478

BLAST of CmaCh09G000370 vs. ExPASy TrEMBL
Match: A0A3B6DEY3 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 0

Query: 11  TLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPF 70
           TL++SSP+T++S+ S+VE+TS H KSTDT G S T++ P +  +AA   A  TSSA + F
Sbjct: 2   TLTMSSPMTMLSDASMVEDTSEHRKSTDTSGSSQTSRMPLSSLAAASRNAWFTSSARV-F 61

Query: 71  FSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKSR 129
               TTRSTT+T GVGTRSAIPLSLPL  G+T  TA AAPV VGTM  AAA AR +SR
Sbjct: 62  LETCTTRSTTDTLGVGTRSAIPLSLPLRLGSTSATALAAPVEVGTMLSAAARARRRSR 118

BLAST of CmaCh09G000370 vs. ExPASy TrEMBL
Match: A0A0A9LVV8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 49  PFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFA 108
           P +GPSAAF  A  TSSA MP FS+  TRSTTETFGVGTRSA+PLSLP SWG+TR TA A
Sbjct: 2   PLSGPSAAFRNAPFTSSAVMPVFSVLITRSTTETFGVGTRSAMPLSLPFSWGSTRATALA 61

Query: 109 APVLVGTMFKAAALARLKSR 129
           APVLVGTMF AAA A L+SR
Sbjct: 62  APVLVGTMFSAAARALLRSR 81

BLAST of CmaCh09G000370 vs. NCBI nr
Match: KAG9151299.1 (hypothetical protein Leryth_002832 [Lithospermum erythrorhizon])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-25
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 49  PFNGPSAAFLKAALTSSAEMPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFA 108
           PFNGPSAAFLKAALTSSA +PFFS   TRSTTET GVGTR A+P SLPLSWG+TR+TA A
Sbjct: 2   PFNGPSAAFLKAALTSSAVIPFFSTLMTRSTTETLGVGTRRAMPFSLPLSWGSTRETALA 61

Query: 109 APVLVGTMFKAAALARLKSRSMS 132
           APVLVGTM  AAALARLKSR+ +
Sbjct: 62  APVLVGTMLSAAALARLKSRTFA 84

BLAST of CmaCh09G000370 vs. NCBI nr
Match: CAN81495.1 (hypothetical protein VITISV_031969 [Vitis vinifera])

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-25
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           ++TTL++SSPIT+V +ES VE+TS HLKSTDT G SH    P +  SA FLKAA TSSA+
Sbjct: 358 RSTTLTMSSPITMVRDESTVEDTSEHLKSTDTSGSSHIDGIPLSSFSALFLKAAFTSSAK 417

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKS 127
           +      TTRSTTET  VGTR A+PLS PL  G TR TAFAAPV VGTM + AA  RL++
Sbjct: 418 VSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAFAAPVEVGTMLRTAARTRLRT 477

Query: 128 R 129
           R
Sbjct: 478 R 478

BLAST of CmaCh09G000370 vs. NCBI nr
Match: KAF7016805.1 (hypothetical protein CFC21_030333 [Triticum aestivum])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-22
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 0

Query: 11  TLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAEMPF 70
           TL++SSP+T++S+ S+VE+TS H KSTDT G S T++ P +  +AA   A  TSSA + F
Sbjct: 2   TLTMSSPMTMLSDASMVEDTSEHRKSTDTSGSSQTSRMPLSSLAAASRNAWFTSSARV-F 61

Query: 71  FSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPVLVGTMFKAAALARLKSR 129
               TTRSTT+T GVGTRSAIPLSLPL  G+T  TA AAPV VGTM  AAA AR +SR
Sbjct: 62  LETCTTRSTTDTLGVGTRSAIPLSLPLRLGSTSATALAAPVEVGTMLSAAARARRRSR 118

BLAST of CmaCh09G000370 vs. NCBI nr
Match: VVW58739.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-20
Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 8   KATTLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 67
           +A T ++SSPIT+VS+ S V++TS HLKSTDTRG SHT + P +  SA  LKAA TSSA 
Sbjct: 18  QAITFTMSSPITMVSDASTVDDTSEHLKSTDTRGSSHTDRMPCSSLSALSLKAAFTSSAN 77

Query: 68  MPFFSMFTTRSTTETFGVGTRSAIPLSLPLSWGNTRDTAFAAPV 112
           + FF   TTRSTT+T GVGT SAIP S PLS G+T  TA AAPV
Sbjct: 78  V-FFCTCTTRSTTDTLGVGTLSAIPFSFPLSVGSTSATALAAPV 120

BLAST of CmaCh09G000370 vs. NCBI nr
Match: KAF1886043.1 (hypothetical protein Lal_00021324 [Lupinus albus])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-08
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 11 TLSISSPITIVSEESIVEETSVHLKSTDTRGISHTAKTPFNGPSAAFLKAALTSSAE 68
          TL+ISSP+TIV++ESIVEETSVHLKSTDT G S T + PF+  SA  L AA TSSA+
Sbjct: 2  TLTISSPMTIVNDESIVEETSVHLKSTDTSGSSQTERIPFSSLSALSLNAAFTSSAK 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P2JS942.5e-4178.51Glyceraldehyde-3-phosphate dehydrogenase Bic isoform X1 OS=Rhizophora mucronata ... [more]
A0A6N2M8K35.7e-3049.24Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS336608 PE=4 SV=... [more]
A5BUM41.9e-2561.16RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_031969 ... [more]
A0A3B6DEY31.5e-2259.32Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
A0A0A9LVV81.3e-2175.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG9151299.11.4e-2579.52hypothetical protein Leryth_002832 [Lithospermum erythrorhizon][more]
CAN81495.13.9e-2561.16hypothetical protein VITISV_031969 [Vitis vinifera][more]
KAF7016805.13.1e-2259.32hypothetical protein CFC21_030333 [Triticum aestivum][more]
VVW58739.15.0e-2062.50unnamed protein product, partial [Nymphaea colorata][more]
KAF1886043.15.7e-0868.42hypothetical protein Lal_00021324 [Lupinus albus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G000370.1CmaCh09G000370.1mRNA