CmaCh08G006500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr08: 3777109 .. 3779981 (+)
RNA-Seq Expression	CmaCh08G006500
Synteny	CmaCh08G006500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGAGAGTCAAATGAGAAGAAGGTAAAGCGACTAAACTGGAAGCAAAGCCGAAAGCGAAACCCTTTTCCTCTATTTATTACCTTCCCTTATTTATTGAGGTAATTTGCAAGTCAAGACTCAACTCAAGATTCATTCTTCTTTTCCTTCTTTCACGGTAAACTAAGACTCAACAAGAAGAAATTCATTAGCTTAGCTGCTTTACAGGAGAAAGAGATGAATGAGAGTGAACGAACCCTCTTTCTCTCCTCTCCTTAACAGTCGAGCTGCTTCGCGCCTCTTCTCGTGGAGCTGCTTCGCCCGGTCTCATTTCGCTCATTTGCCTCGTAAACTAAACTATAAGTCAAGCTCTTTCGCTCCTGAATCTCTCCCTTATGAATCAAAAAAAGACTCAACTCAAGATTAATTCGACTTTACAGTCTTTGAATCAATGAATTAGCTGCAAAGACTCAACTCAACAAACAAGATTCATTCTCCTTCACCGATATATATGACTTGAGCTTATTGAACTGTAGACAAAGAGAAATACTCCAGATGAATGAGACTTAACTCCGCTGAATCTTTGACTGATTGAACTCGTTCTCGTGGCTTCGTCGCTCCTGAACCGATATATATGCCCTTGATTGAACAGTAAGAAAAGAAGCAAGCTCCTTCCCCTGAACCTGATGGAACTCCTTCCCCTAAACCCTCTTTCACTCCTCTCCCTATCGGAGGTCTCTCTCGTTGCTTCGCTCATTCACCTATTCATTGTCGGTCCCATTGCTTCGCTCCTAAACATGATTTTACAAGGTAAAAGACAAAGAGAATGAATTGAAGAATCAAATCAAAGAAGAATCAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGTTTACAGTGAAAGAAAGAAGAAGAATCAATAAATTAGAAGCTTCTTTCAAAGATGAAACTAAAGATGAATGATCCTGAACTACTTCCTGAACCGATATAACCTAACCTGATTTCCGGAGGTCAAAGTAGCTCCTTCACTACTGAACCTGAACCTGAACCTGACAAGAAAGAAAGAGAATGCAAGAATCAGAATCAGATATTCCTTCGGAACCAGAACCTTATACTCAATTACCTGACCTACACCTATTTATTCAAAGTAAACGAAGAGAAAGCAAGACAAGATGAATTACAGGAAGGAAAGAGAAAATCAAGCTTAATGAGAGTGAACTGGAAGGAAAGACGAAGAAAGATGAATGATGGGAATATAACTATACTAAGTAAGCAGTGTTCAGTTATTGCATTAAGGAAGTCAAGATGAATGAGACGAAACAAATGAAAAAAGATCAGCTCATTCACCTTCATTTTCTTCTTCTGCCTGAACCTCCCTTCCCGGAACCTTTACTGTCGAGCTACTCCTATTTCTTCTTTCTCCTTCACCTTTACAGGAAAGAAAAGAATAAGAAATCCTTCACCTCGGCTTCGCCCCTTTACTCTTCATTCTCCTTAACTCCTTGTTCCGTTCTTGTTCAGTTATTCTTTCATCACAAGGTAAATAGGTGTTCATTCAGTAGCTCTTTGATTGAACTGATCTTGATCCTCTCGCTACTTACTCATTCAGCCAGCTGAACCAATATTCCCTATTTATTCTTCTTTAACTGTAACTGTAAACGAAGAGAAAGAGAAGCGACTAAACTAGAACCAGATTGGGTAATTAGGAAGGAAAGAGAGGAATGAGACTGAACCTCTATTTATTCCCTTTTTTACAGTTCAAGAAATCCGGGAGAGAGAAGAGACCGTCAAATAGTGAACCCCTTGTTTACAGTCGAGTAAATTAATTAGCTGTTTTTCAAGACTCAACCTTATTCCTATGTGTTTACAGTGAGAATGAAAGAAGAAGAAGAAATTCATTAGATTAGCTGCTTACAAGAGAATTGATTGAATGAAGAAAGAAAGGAAAGACTCTCGATTCATTCTCCTTTTCTTTGACAGGCAAGTCAATTCATTAGATGGCTGTTGAGTAAAGAAAAGATAAGAGAATTGAAAGACTGAAGATGAATGAGAGTGAAGACGAAAGAAGAATTAGACTGAACTACTGAACGAACCTGATTGAACGAACCCATCCTTTACAGTTCGTTCTAGAATCAATGAATATTCAATCCCGAACCTTTACTCCTGAACCTTAACCGATAGAGAATGAAAGAAGGGAGAGTCAATTCCTTTCCTTGCAGCTCAATCACCTGAACTGGAACTCTTGAACAAGGTCAAGCTATTTGATTGAATTCTCCTTCCCCTTATACGACTCTGAGCTTATTGTAAACGAGGTCGGTCTCACAGCTTGGCCCCTTTCCTCTGCATTCTGCTTTTCCTCTTCGTCTGGTTTTCATCATTCCTCTCCTGCCTGCCTGTAAGAAGGATGAATGAACCTATTTCTTCTTAAACGGATCTTTCTCCTCTCGCAACTGACTCCTGACCCGGACCCTTCTTTCACTTCTCTTTCTCCCTTGAACTTGATTGGAACGCCACGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACCGGACAAGATCCTTTTTTCGGGCAATGGGTATACTCTCGGAATTCCATTAGTTCTATATCAACGTTCTAACAAAAAGACTTGTATGCAGCAAAAATCCCAAGTTCCCCAGGGTAAATGCATTAAAAAAGGGCAAATGTTAGCGGACGGTGCTGCTTTAGTGGCGAACTTGCGTTGGTAAAAACCGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACGTACATGGATACGGAAATATGAAATTCAAACTCATG

mRNA sequence

AGAGGAGAGTCAAATGAGAAGAAGGTAAAGCGACTAAACTGGAAGCAAAGCCGAAAGCGAAACCCTTTTCCTCTATTTATTACCTTCCCTTATTTATTGAGGGCAAATGTTAGCGGACGGTGCTGCTTTAGTGGCGAACTTGCGTTGGTAAAAACCGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACGTACATGGATACGGAAATATGAAATTCAAACTCATG

Coding sequence (CDS)

AGAGGAGAGTCAAATGAGAAGAAGGTAAAGCGACTAAACTGGAAGCAAAGCCGAAAGCGAAACCCTTTTCCTCTATTTATTACCTTCCCTTATTTATTGAGGGCAAATGTTAGCGGACGGTGCTGCTTTAGTGGCGAACTTGCGTTGGTAAAAACCGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACGTACATGGATACGGAAATATGAAATTCAAACTCATG

Protein sequence

RGESNEKKVKRLNWKQSRKRNPFPLFITFPYLLRANVSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGYGNMKFKLM

Homology

[Close]

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot
Match: Q06RD9 (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum OX=126431 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 643 GAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 693

[Close]

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot
Match: Q2MIJ5 (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL
Match: A0A7H0R3B3 (DNA-directed RNA polymerase subunit beta OS=Oberonioides microtatantha OX=1559823 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 38  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           SG     GELAL K VLVAYMPWEGYN EDAVLISERLVYEDIYTSFH+H Y
Sbjct: 640 SGAATAGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIHKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL
Match: H2F6Q4 (DNA-directed RNA polymerase subunit beta OS=Scadoxus cinnabarinus OX=112577 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 42/53 (79.25%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 37  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           V G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 639 VDGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL
Match: G0Y398 (DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium striatum OX=59001 GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 75  GAATVSGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 125

[Close]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL
Match: A0A0S2IFG3 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVSGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL
Match: A0A0S2IE41 (DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma OX=34294 GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVSGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. NCBI nr
Match: KAF3625926.1 (hypothetical protein FXO37_30605 [Capsicum annuum])

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-15
Identity = 46/59 (77.97%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGYGNMKFKLM 98
           G     GEL+L K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSF    YGNMKF+LM
Sbjct: 206 GGATVGGELSLGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSF---TYGNMKFRLM 261

[Close]

BLAST of CmaCh08G006500 vs. NCBI nr
Match: YP_009996519.1 (RNA polymerase beta subunit [Oberonioides microtatantha] >QNQ65996.1 RNA polymerase beta subunit [Oberonioides microtatantha])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 38  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           SG     GELAL K VLVAYMPWEGYN EDAVLISERLVYEDIYTSFH+H Y
Sbjct: 640 SGAATAGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIHKY 691

[Close]

BLAST of CmaCh08G006500 vs. NCBI nr
Match: AEX94337.1 (RNA polymerase beta subunit [Scadoxus cinnabarinus])

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 42/53 (79.25%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 37  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           V G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 639 VDGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. NCBI nr
Match: AEJ90756.1 (RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. macrocarpum] >AEJ90823.1 RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. laetum] >AST24576.1 RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 75  GAATVSGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 125

[Close]

BLAST of CmaCh08G006500 vs. NCBI nr
Match: YP_009175759.1 (RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ALH42737.1 RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ANK78934.1 RNA polymerase beta subunit [Astragalus membranaceus var. membranaceus])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Sbjct: 641 GAATVSGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKY 691

[Close]

BLAST of CmaCh08G006500 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-15
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 39  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY 90
           G     GELAL K +LVAYMPWEGYN EDAVLISE LVY DIYTSFH+  Y
Sbjct: 643 GAATVGGELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKY 693

The following BLAST results are available for this feature:

BLAST of CmaCh08G006500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8X9	1.2e-16	80.39	DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P...	[more]
Q06RD9	1.2e-16	80.39	DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum OX=126431 GN=rpo...	[more]
Q3C1G7	1.2e-16	80.39	DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB...	[more]
Q33C46	1.2e-16	80.39	DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN...	[more]
Q2MIJ5	1.2e-16	80.39	DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=r...	[more]

BLAST of CmaCh08G006500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7H0R3B3	9.2e-15	80.77	DNA-directed RNA polymerase subunit beta OS=Oberonioides microtatantha OX=155982...	[more]
H2F6Q4	1.2e-14	79.25	DNA-directed RNA polymerase subunit beta OS=Scadoxus cinnabarinus OX=112577 GN=r...	[more]
G0Y398	1.6e-14	82.35	DNA-directed RNA polymerase (Fragment) OS=Sisyrinchium striatum OX=59001 GN=rpoB...	[more]
A0A0S2IFG3	1.6e-14	82.35	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=rpoB P...	[more]
A0A0S2IE41	1.6e-14	82.35	DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma OX=34294 GN=r...	[more]

BLAST of CmaCh08G006500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3625926.1	3.8e-15	77.97	hypothetical protein FXO37_30605 [Capsicum annuum]	[more]
YP_009996519.1	1.9e-14	80.77	RNA polymerase beta subunit [Oberonioides microtatantha] >QNQ65996.1 RNA polymer...	[more]
AEX94337.1	2.5e-14	79.25	RNA polymerase beta subunit [Scadoxus cinnabarinus]	[more]
AEJ90756.1	3.3e-14	82.35	RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. macrocarpu...	[more]
YP_009175759.1	3.3e-14	82.35	RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus] >ALH42737.1 ...	[more]

BLAST of CmaCh08G006500 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	3.1e-15	72.55	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 51..85 e-value: 1.7E-17 score: 64.4
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 8..88 e-value: 7.1E-15 score: 55.0
None	No IPR available	GENE3D	2.40.50.100		coord: 38..50 e-value: 1.7E-17 score: 64.4
None	No IPR available	PANTHER	PTHR20856:SF20	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 38..89
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 31..89
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 38..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006500.1	CmaCh08G006500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding