CmaCh08G005670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Non-specific lipid-transfer protein
Location	Cma_Chr08: 3230092 .. 3230804 (+)
RNA-Seq Expression	CmaCh08G005670
Synteny	CmaCh08G005670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTCTCATCCAAATCCCTCTACATAAAGTTTGAAGATCATATCACACCTTCCACTTGATCCCATAAGCTACAAGCCATGGCATCTCTTAAAGTAACCATGGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGAACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTTTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTGTTCCAAGTACGAAATTCTATACCCTAAAATTGAATTTTTGTTTGAAGAAAGTACTGTTAATTAGCGTTGTTTGTGTTGTTAATTTTCAGGATTAGTTGATTATGAGACAGGAGCTGGCAGCATTCTACTATAAACTTGGAGAAATTAGTATATATATTATGTAATCAAATAAAATAAAAGTAGCTGGAATGGAATCTAATCTCGTGGATTTTTAGATTCCTTTTATGTCTTCATATCATGTGCTCCGAGTGTACCTTTGTTTCTTCTTATATTCATATAAAAATATGTTATCCTATTATTTCCTTTT

mRNA sequence

ATTTTTTCTCATCCAAATCCCTCTACATAAAGTTTGAAGATCATATCACACCTTCCACTTGATCCCATAAGCTACAAGCCATGGCATCTCTTAAAGTAACCATGGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGAACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTTTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTGTTCCAAGATTAGTTGATTATGAGACAGGAGCTGGCAGCATTCTACTATAAACTTGGAGAAATTAGTATATATATTATGTAATCAAATAAAATAAAAGTAGCTGGAATGGAATCTAATCTCGTGGATTTTTAGATTCCTTTTATGTCTTCATATCATGTGCTCCGAGTGTACCTTTGTTTCTTCTTATATTCATATAAAAATATGTTATCCTATTATTTCCTTTT

Coding sequence (CDS)

ATGGCATCTCTTAAAGTAACCATGGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGAACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTTTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTGTTCCAAGATTAGTTGA

Protein sequence

MASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS

Homology

[Close]

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot
Match: Q9ZPW9 (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-24
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 19  SEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACECIKSVA 78
           SE+AISC+ V ++L PCVSYL SGSG PP  CCDG K+L+ A T+S DKKAAC+CIKSVA
Sbjct: 22  SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81

Query: 79  GNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            +V    +LA+ L  NCG +LP   S  +DC+ +
Sbjct: 82  NSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot
Match: Q43767 (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 2   ASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           AS  V +A +  +LL  ++AAISC  V+  L PC+SY      KPP+ACC G K L+ AA
Sbjct: 6   ASQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot
Match: Q42842 (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.8e-22
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 2   ASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +LL  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot
Match: Q43875 (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 2   ASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +L+  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot
Match: Q43766 (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare OX=4513 GN=LTP3 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 2   ASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +LL  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGNVK-YNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC C+KS+A ++K  N      +PG CG+++PF IS   DC+K+
Sbjct: 66  QSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117

[Close]

BLAST of CmaCh08G005670 vs. TAIR 10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-25
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 19  SEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACECIKSVA 78
           SE+AISC+ V ++L PCVSYL SGSG PP  CCDG K+L+ A T+S DKKAAC+CIKSVA
Sbjct: 22  SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81

Query: 79  GNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
            +V    +LA+ L  NCG +LP   S  +DC+ +
Sbjct: 82  NSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of CmaCh08G005670 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 19  SEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACECIKSVA 78
           SEAAISCN V  NL PCV Y++ G G  P +CC+G + LS  ATS+ DK+  C CIKSV 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVV 79

Query: 79  GNVKYNA---KLAEDLPGNCGITLPFSISAGIDCSKI 113
           G V Y++   K A  LPG CG+ LP+ I    +C+ I
Sbjct: 80  GRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

[Close]

BLAST of CmaCh08G005670 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 7   TMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T   + + ++   +AAISC  V  +L PC +YL  G   PPS CC G K L+  A ++ D
Sbjct: 9   TCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSMAKTTPD 68

Query: 67  KKAACECIKSVAGNVK-YNAKLAEDLPGNCGITLPFSISAGIDCSKI 113
           ++ AC CI+S A ++   N  LA  LPG CG+++P+ IS   +C+ I
Sbjct: 69  RQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of CmaCh08G005670 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 8   MAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           +A  ++L L   EAA+SCN V  +L PC+SY+  G G  P+ CC+G   L   A +S D+
Sbjct: 6   LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDR 65

Query: 68  KAACECIKSVAGNVKYNAKL---AEDLPGNCGITLPFSISAGIDCSKI 113
           +  C CIKS  G +  + +    A +LP  CG+ LP+  S   DC  I
Sbjct: 66  QGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSI 112

[Close]

BLAST of CmaCh08G005670 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-15
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 8   MAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           +A  ++L L   EAA+SCN V  +L PC+SY+  G G  P+ CC+G   L   A +S D+
Sbjct: 6   LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDR 65

Query: 68  KAACECIKSVAGNVKYNAKL---AEDLPGNCGITLPFSISAGIDC 110
           +  C CIKS  G +  + +    A +LP  CG+ LP+  S   DC
Sbjct: 66  QGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109

The following BLAST results are available for this feature:

BLAST of CmaCh08G005670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPW9	3.2e-24	56.38	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
Q43767	1.8e-22	49.55	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=...	[more]
Q42842	8.8e-22	48.65	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=...	[more]
Q43875	1.5e-21	47.75	Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=...	[more]
Q43766	3.7e-20	44.64	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare OX=4513 GN=LTP3 PE=3 SV...	[more]

BLAST of CmaCh08G005670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18370.1	2.3e-25	56.38	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G01870.1	3.8e-20	50.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59320.1	5.6e-16	39.25	lipid transfer protein 3	[more]
AT3G08770.1	2.1e-15	38.89	lipid transfer protein 6	[more]
AT3G08770.2	8.1e-15	39.05	lipid transfer protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 24..40 score: 41.27 coord: 66..81 score: 43.94 coord: 100..111 score: 44.74 coord: 82..99 score: 33.68 coord: 45..59 score: 39.38
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 6..112
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 91..112
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 25..109 e-value: 2.1E-8 score: 43.9
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 25..109 e-value: 1.5E-8 score: 34.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 22..113 e-value: 2.3E-28 score: 100.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 22..112
None	No IPR available	PANTHER	PTHR33076:SF62	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 6..112
None	No IPR available	CDD	cd01960	nsLTP1	coord: 23..110 e-value: 5.10984E-32 score: 106.28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005670.1	CmaCh08G005670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding