CmaCh08G005620 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G005620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr08: 3204711 .. 3205076 (-)
RNA-Seq ExpressionCmaCh08G005620
SyntenyCmaCh08G005620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA

mRNA sequence

ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA

Coding sequence (CDS)

ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA

Protein sequence

MAANGGSSAANSHSQPTFPLHLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLLVHWLSNAGNSLLPEKDSLHRAGGMPWGVGFLLVLLLFMISYQSYFQERWFPLLSR
Homology
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT2G31940.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 11  NSHSQPTFPLHLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLLVHWL 70
           +    P  PLHLC F LILLMF++ SWY +YE V+EG   Q KL L+  PLLLLL VH+L
Sbjct: 4   DQEGSPPVPLHLCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFL 63

Query: 71  SN---AGNSL-----LPEKDSLHRAGGMPWGVGFLLVLLLFMISYQSYFQERWFPL 119
           S+    G  +     L E++SL+RAGG PWGV F+LV L FM+SYQS FQERWFPL
Sbjct: 64  SDDQGVGGMMTSLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFPL 119

BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-27
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 21  HLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLLVHWLSNAGNSLL-- 80
           HLCF F+++   LS++WYLN+ES++E   D LKL+ I  PL LLLLVH+ S   +  +  
Sbjct: 21  HLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLLLVHFFSGGLSFYVPW 80

Query: 81  PEKDSLHRAGGMPWGVGFLLVLLLFMISYQSYFQERWFP 118
           PE+DS+HRAG  PWGV  +LVL+LFM+SYQS FQERWFP
Sbjct: 81  PEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFP 119

BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 0

Query: 7   SSAANSHSQPTFPLHLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLL 66
           SS  +S S    P  +     +  +FL  SWY + E   E   +Q+   L+++PL L++L
Sbjct: 8   SSILDSFSLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVL 67

Query: 67  VHWLSNAGN--SLLPEKDSLHR-----------AGGMPWGVGFLLVLLLFMISYQSYFQE 116
           V WLS+  N  +LL    S  R            G  PWGV  L+VLLL ++ YQS F E
Sbjct: 68  VRWLSSMENPDALLGMFSSSRRTTYVSPGAGGDGGSSPWGVAALIVLLLVLLQYQSSFLE 127

BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 38/109 (34.86%), Postives = 53/109 (48.62%), Query Frame = 0

Query: 19  PLHLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLLVHWLSNAGNSLL 78
           PL L     I+ + L  S Y  Y+  VE     LKL ++ LP+L + ++  LS     L 
Sbjct: 29  PLTLLALLAIISLLLFLSSYPRYKYEVEKTAANLKLFMLFLPILFVFVLVSLSFVHRLLF 88

Query: 79  P--------EKDSLHRAGGMPWGVGFLLVLLLFMISYQSYFQERWFPLL 120
                    +  SL   G  PWGV  +L+LLL ++S QSYF   W+P L
Sbjct: 89  KSSYSVRANQAKSLFGEGNFPWGVLLMLILLLLLVSKQSYFHSLWYPNL 137

BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT3G06890.1 (unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 42  ESVVEGIFDQLKLL-LIVLPLLLLLLVHWLSNAGNSLLP------EKDSLHRAGGMPWGV 101
           E++ + I + L  + L++LP++LLL + +LS+   S +       E +S+HR  G P GV
Sbjct: 43  EAITDAIAELLSPVGLLLLPIILLLTIQFLSSERGSFVSAIFSTGEPESIHRVSGSPVGV 102

Query: 102 GFLLVLLLFMISYQ 109
              LVL+LF++ Y+
Sbjct: 103 ALFLVLILFLLYYR 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G31940.11.1e-2856.90unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembra... [more]
AT5G19875.13.4e-2757.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT2G21180.12.6e-1135.25unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G42146.12.3e-0734.86unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac... [more]
AT3G06890.11.1e-0435.14unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306:SF5EXPRESSED PROTEIN-RELATEDcoord: 13..121
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 13..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G005620.1CmaCh08G005620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane