CmaCh08G005620 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA ATGGCTGCCAACGGAGGCTCCTCCGCCGCAAATTCCCACTCTCAGCCCACCTTCCCTCTTCATCTCTGCTTCTTCTTCCTCATCCTCCTCATGTTCTTGTCCTACTCTTGGTACCTCAATTACGAGTCGGTTGTCGAAGGCATCTTCGATCAGCTCAAGCTTCTTCTCATCGTCTTGCCGCTCCTCCTCCTCCTCCTCGTCCACTGGCTCTCCAACGCTGGAAACTCTCTTTTACCTGAAAAAGACTCGCTCCACCGCGCCGGTGGGATGCCGTGGGGCGTCGGGTTCTTGTTGGTTCTTCTCCTTTTCATGATCTCGTACCAATCCTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGA MAANGGSSAANSHSQPTFPLHLCFFFLILLMFLSYSWYLNYESVVEGIFDQLKLLLIVLPLLLLLLVHWLSNAGNSLLPEKDSLHRAGGMPWGVGFLLVLLLFMISYQSYFQERWFPLLSR Homology
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT2G31940.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28 Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 118.6 bits (296), Expect = 3.4e-27 Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11 Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 0
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07 Identity = 38/109 (34.86%), Postives = 53/109 (48.62%), Query Frame = 0
BLAST of CmaCh08G005620 vs. TAIR 10
Match: AT3G06890.1 (unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04 Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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