CmaCh08G005560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	homeobox-leucine zipper protein HOX11-like
Location	Cma_Chr08: 3178646 .. 3180062 (-)
RNA-Seq Expression	CmaCh08G005560
Synteny	CmaCh08G005560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTGACTCATCTTATCACAAAATCTTTAATACTCTTTTCATTATTTCGCAGTCTTCTCCACTCCAAACTCGCCGTTAACTCGTCTCCTTCCTTTTCCGCCTGCGCTCTGCCGCAGCACCGATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCGAACCCTTCCGTTTCGTCGACAAGCAACCGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCTGACGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACAAATCCATACCAAGGATTTCCATGGCCGTCGTCCGAAAACGGTAAGGTTTTCGAGATTTCGAAACCCTGACTGTAACAACCTTCCAAATCACGAAATCATTTCCCCTGATTTTTCTAACGGAAATTGATTGTTTTCAGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTACACGGATAGATCAAATGAAAAATAGCGTGGTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCTCGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAGTAAGAACACAGCGATTGATTTCTTAATTTTAACCTCGAATCTTAATTTCTGAAACTGATTCTTGCGATTCCGATTCCGATTTGTACAGAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGTAATTGGTTCAGTCGTTCGAATCAAATCAGTTATGGAATAGATTCTTTGGGGAAATTTGTTGAAATTTGTAGAAATTTACAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACGAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTCACCTCCTCCGTCGCCACAGCCACCGACGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGCGCAAGCTCCTCTTTCCCATTTTCTGCAAAAACGCAGACCCACCAGTCAACAACTTCATGATAAGGAGATATGGGTTAAGGCGAATCATGATGGTGCTCCCTTTTCTGTACATAAAACCCTTTCCCCCCCCC

mRNA sequence

TTATTTGACTCATCTTATCACAAAATCTTTAATACTCTTTTCATTATTTCGCAGTCTTCTCCACTCCAAACTCGCCGTTAACTCGTCTCCTTCCTTTTCCGCCTGCGCTCTGCCGCAGCACCGATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCGAACCCTTCCGTTTCGTCGACAAGCAACCGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCTGACGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACAAATCCATACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTACACGGATAGATCAAATGAAAAATAGCGTGGTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCTCGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACGAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTCACCTCCTCCGTCGCCACAGCCACCGACGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGCGCAAGCTCCTCTTTCCCATTTTCTGCAAAAACGCAGACCCACCAGTCAACAACTTCATGATAAGGAGATATGGGTTAAGGCGAATCATGATGGTGCTCCCTTTTCTGTACATAAAACCCTTTCCCCCCCCC

Coding sequence (CDS)

ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCGAACCCTTCCGTTTCGTCGACAAGCAACCGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCTGACGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACAAATCCATACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTACACGGATAGATCAAATGAAAAATAGCGTGGTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCTCGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACGAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTCACCTCCTCCGTCGCCACAGCCACCGACGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGCGCAAGCTCCTCTTTCCCATTTTCTGCAAAAACGCAGACCCACCAGTCAACAACTTCATGA

Protein sequence

MELGLSLGDTPEPFRFVDKQPQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSSVATATDGGGKLPGFAISGGASSSFPFSAKTQTHQSTTS

Homology

[Close]

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot
Match: P46665 (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 PE=2 SV=3)

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-69
Identity = 171/314 (54.46%), Postives = 207/314 (65.92%), Query Frame = 0


Query: 1   MELGLSLGD-TPEPFRFVDKQPQ------PQRGLSRPDLGFCVDL--------SIGRTIA 60
           MEL LSLGD T + F F++K  +           S  DLGFC+ L        S+  + +
Sbjct: 1   MELALSLGDNTKKQFSFMEKNSKINNPSVSSTSTSEKDLGFCMALDVAFGGHRSLSSSSS 60

Query: 61  GDKEGDEEKPNQREEESD-----GNEDPPIQLDL-----LPRNPVQRNLTNPYQGFPWPS 120
              E +++KP  R ++SD      + DPP+QL L     LP N   R       G     
Sbjct: 61  PSVEDEKKKPAPRAKKSDEFRVSSSVDPPLQLQLHFPNWLPENSKGRQGGRMPLGAATVV 120

Query: 121 SENDEVEDRSAS-----PNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERAS 180
            E +E E+   S     P+S  SSFQ++FG+   G    +     K  + +EV   ER++
Sbjct: 121 EEEEEEEEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSN----KRDIDDEV---ERSA 180

Query: 181 SRASDE---DENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEV 240
           SRAS+E   DENGSTRKKLRLSKDQSA+LE+SFKEH+TLNPKQK+ALAKQLNLRPRQVEV
Sbjct: 181 SRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEV 240

Query: 241 WFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTL 282
           WFQNRRARTKLKQTEVDCEYLKRCCE+LTEENRRLQKE++ELR LKT+  FYMQLPATTL
Sbjct: 241 WFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTL 300

[Close]

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot
Match: Q67UE2 (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX11 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 9.2e-61
Identity = 167/353 (47.31%), Postives = 199/353 (56.37%), Query Frame = 0


Query: 1   MELGLSLGDTPEPFRFVDKQPQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREE 60
           MELGLSLG+                 ++       + L +GR     + G  +   +RE 
Sbjct: 1   MELGLSLGE----------------AMADAGRELVLGLGMGRREEAAEAGRRDHEVRREL 60

Query: 61  E--------SDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDR-------- 120
           E           + +P ++L LLP  P    L  P+   P PSSE+  +E          
Sbjct: 61  EFGSMSSRCGGSSPEPTVRLTLLPMVP---GLGLPWPPPPPPSSESRHLEASTRGFDVNR 120

Query: 121 -------------------------SASPNSAASSFQM-EFGLYGGGGNISTRIDQMKNS 180
                                    S+SPN++A SF M +F  +G GG          N 
Sbjct: 121 PPSSGGGGGGGGAEEEQDDVAGAALSSSPNNSAGSFPMDDFSGHGLGG----------ND 180

Query: 181 VVNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQL 240
                G  +R+ SRASDED+ GS RKKLRLSK+QSA+LEESFKEH+TLNPKQKLALAKQL
Sbjct: 181 AAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQL 240

Query: 241 NLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSF 300
           NLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL ELRALKT + F
Sbjct: 241 NLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPF 300

Query: 301 YMQLPATTLTMCPSCERVTSSVATATDGGGKLPGFAISGGASSSFPFSAKTQT 312
           YM LPATTL+MCPSCERV S+ A AT         A    A SS   +A + +
Sbjct: 301 YMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSS 324

[Close]

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot
Match: A2Z1U1 (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica OX=39946 GN=HOX11 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-60
Identity = 141/218 (64.68%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 97  ENDEVEDR--SASPNSAASSFQM-EFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRA 156
           E D+V     S+SPN++A SF M +F  +G GG          N      G  +R+ SRA
Sbjct: 30  EQDDVAGAALSSSPNNSAGSFPMDDFSGHGLGG----------NDAAPGGGGGDRSCSRA 89

Query: 157 SDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRR 216
           SDED+ GS RKKLRLSK+QSA+LEESFKEH+TLNPKQKLALAKQLNLRPRQVEVWFQNRR
Sbjct: 90  SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRR 149

Query: 217 ARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSC 276
           ARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL ELRALKT + FYM LPATTL+MCPSC
Sbjct: 150 ARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSC 209

Query: 277 ERVTSSVATATDGGGKLPGFAISGGASSSFPFSAKTQT 312
           ERV S+ A AT         A    A SS   +A + +
Sbjct: 210 ERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSS 237

[Close]

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot
Match: A2YW03 (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica OX=39946 GN=HOX27 PE=2 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 6.6e-59
Identity = 156/313 (49.84%), Postives = 189/313 (60.38%), Query Frame = 0


Query: 1   MELGLSLGDTPEPFRFVDKQPQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREE 60
           MELGLSLGD        D          R +L   + + +G   AG + G+EE+  +RE+
Sbjct: 1   MELGLSLGDA---VTVADG--------GRLELVLGLGVGVG---AGVRRGEEEERGRRED 60

Query: 61  ---------ESDGNEDPPIQLDLLP----RNPVQRNLTN-----------PYQGFPWPSS 120
                     +  + +P ++L L+       P +   +            P      P  
Sbjct: 61  VVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGM 120

Query: 121 ENDE-----VEDRSASPNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASS 180
           E+DE         S+SPN +  SF ++   +G  G+                G  ER+SS
Sbjct: 121 EDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGG-----GGGERSSS 180

Query: 181 RASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQN 240
           RASD+DE  S RKKLRLSK+QSA+LEESFKEH+TLNPKQK+ALAKQLNLRPRQVEVWFQN
Sbjct: 181 RASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQN 240

Query: 241 RRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCP 285
           RRARTKLKQTEVDCEYLKRCCETLTEENRRL KEL ELRALKT   FYM LPATTL+MCP
Sbjct: 241 RRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCP 294

[Close]

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot
Match: Q6YPD0 (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX27 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-58
Identity = 156/313 (49.84%), Postives = 188/313 (60.06%), Query Frame = 0


Query: 1   MELGLSLGDTPEPFRFVDKQPQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREE 60
           MELGLSLGD        D          R +L   + + +G   AG + G+EE+  +RE+
Sbjct: 1   MELGLSLGDA---VTVADG--------GRLELVLGLGVGVG---AGVRRGEEEERGRRED 60

Query: 61  ---------ESDGNEDPPIQLDLLP----RNPVQRNLTN-----------PYQGFPWPSS 120
                     +  + +P ++L L+       P +   +            P      P  
Sbjct: 61  VVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGM 120

Query: 121 ENDE-----VEDRSASPNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASS 180
           E+DE         S+SPN +  SF ++    G  G+                G  ER+SS
Sbjct: 121 EDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGG-----GGGERSSS 180

Query: 181 RASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQN 240
           RASD+DE  S RKKLRLSK+QSA+LEESFKEH+TLNPKQK+ALAKQLNLRPRQVEVWFQN
Sbjct: 181 RASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQN 240

Query: 241 RRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCP 285
           RRARTKLKQTEVDCEYLKRCCETLTEENRRL KEL ELRALKT   FYM LPATTL+MCP
Sbjct: 241 RRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCP 294

[Close]

BLAST of CmaCh08G005560 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-70
Identity = 171/314 (54.46%), Postives = 207/314 (65.92%), Query Frame = 0


Query: 1   MELGLSLGD-TPEPFRFVDKQPQ------PQRGLSRPDLGFCVDL--------SIGRTIA 60
           MEL LSLGD T + F F++K  +           S  DLGFC+ L        S+  + +
Sbjct: 1   MELALSLGDNTKKQFSFMEKNSKINNPSVSSTSTSEKDLGFCMALDVAFGGHRSLSSSSS 60

Query: 61  GDKEGDEEKPNQREEESD-----GNEDPPIQLDL-----LPRNPVQRNLTNPYQGFPWPS 120
              E +++KP  R ++SD      + DPP+QL L     LP N   R       G     
Sbjct: 61  PSVEDEKKKPAPRAKKSDEFRVSSSVDPPLQLQLHFPNWLPENSKGRQGGRMPLGAATVV 120

Query: 121 SENDEVEDRSAS-----PNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERAS 180
            E +E E+   S     P+S  SSFQ++FG+   G    +     K  + +EV   ER++
Sbjct: 121 EEEEEEEEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSN----KRDIDDEV---ERSA 180

Query: 181 SRASDE---DENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEV 240
           SRAS+E   DENGSTRKKLRLSKDQSA+LE+SFKEH+TLNPKQK+ALAKQLNLRPRQVEV
Sbjct: 181 SRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEV 240

Query: 241 WFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTL 282
           WFQNRRARTKLKQTEVDCEYLKRCCE+LTEENRRLQKE++ELR LKT+  FYMQLPATTL
Sbjct: 241 WFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTL 300

[Close]

BLAST of CmaCh08G005560 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-49
Identity = 119/192 (61.98%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 106 ASPNSAASSF---QMEFGLYGGGGNISTRIDQMKNSVVNEVGESERAS------SRASDE 165
           +SPNSA SS    + +  +  GG                +  E+ERAS      S  SD+
Sbjct: 109 SSPNSAVSSLSGNKRDLAVARGG----------------DENEAERASCSRGGGSGGSDD 168

Query: 166 DENGS---TRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRR 225
           ++ G+   +RKKLRLSKDQ+  LEE+FKEH+TLNPKQKLALAKQLNLR RQVEVWFQNRR
Sbjct: 169 EDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRR 228

Query: 226 ARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQL-PATTLTMCPS 285
           ARTKLKQTEVDCEYLKRCC+ LTEENRRLQKE+ ELRALK +   YM + P TTLTMCPS
Sbjct: 229 ARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPS 284

[Close]

BLAST of CmaCh08G005560 vs. TAIR 10
Match: AT5G47370.1 (Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein )

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-48
Identity = 126/234 (53.85%), Postives = 148/234 (63.25%), Query Frame = 0


Query: 69  PIQLDLLPRNPVQRNLTNPYQGFPW------------------PSSENDEVEDRSASPNS 128
           P+Q++L P + +  NL    Q  PW                  PS+ N E +   +SPNS
Sbjct: 22  PLQMNLNPNSSLSNNL----QRLPWNQTFDPTSDLRKIDVNSFPSTVNCEEDTGVSSPNS 81

Query: 129 AASSF-----QMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRASDEDENG--STR 188
             SS          G+ G G  + +  D       +E+      S   SDE+E+G  ++R
Sbjct: 82  TISSTISGKRSEREGISGTG--VGSGDDH------DEITPDRGYSRGTSDEEEDGGETSR 141

Query: 189 KKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 248
           KKLRLSKDQSA+LEE+FKEHNTLNPKQKLALAK+LNL  RQVEVWFQNRRARTKLKQTEV
Sbjct: 142 KKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEV 201

Query: 249 DCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQL-PATTLTMCPSCERV 277
           DCEYLKRC E LTEENRRLQKE  ELR LK +  FY Q+ P TTL MCPSCERV
Sbjct: 202 DCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERV 243

[Close]

BLAST of CmaCh08G005560 vs. TAIR 10
Match: AT4G37790.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-47
Identity = 111/194 (57.22%), Postives = 134/194 (69.07%), Query Frame = 0


Query: 104 RSASPNSAASSF-----QMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRASDEDE 163
           R  S +S  SSF     + E  + GG G      +  +  V + V +         D++E
Sbjct: 69  RQTSSHSGISSFSSGRVKREREISGGDGEEEAE-ETTERVVCSRVSDDH-------DDEE 128

Query: 164 NGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 223
             S RKKLRL+K QSA LE++FK H+TLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKL
Sbjct: 129 GVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 188

Query: 224 KQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTS 283
           KQTEVDCE+LK+CCETLT+ENRRLQKELQ+L+ALK +  FYM +PA TLTMCPSCER+  
Sbjct: 189 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERL-- 245

Query: 284 SVATATDGGGKLPG 293
                  GGG + G
Sbjct: 249 -------GGGGVGG 245

[Close]

BLAST of CmaCh08G005560 vs. TAIR 10
Match: AT2G22800.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 185.7 bits (470), Expect = 6.0e-47
Identity = 113/210 (53.81%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 104 RSASPNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRASDEDENGSTR 163
           R  S +S  SSF          G +  R          E   +ER  S   +++E  S R
Sbjct: 61  RQTSSHSGVSSF--------SSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISAR 120

Query: 164 KKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 223
           KKLRL+K QSA LEESFK+H+TLNPKQK  LA+QLNLRPRQVEVWFQNRRARTKLKQTEV
Sbjct: 121 KKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEV 180

Query: 224 DCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSSVATA 283
           DCE+LK+CCETL +EN RLQKE+QEL+ LK T  FYM +PA+TLT CPSCER+       
Sbjct: 181 DCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERIGGGGGGN 240

Query: 284 TDGGGKLPGFA-ISGGASSSFPFSAKTQTH 313
             GGG     A I  G+++   FS  ++ H
Sbjct: 241 GGGGGGSGATAVIVDGSTAKGAFSISSKPH 262

The following BLAST results are available for this feature:

BLAST of CmaCh08G005560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46665	2.4e-69	54.46	Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 P...	[more]
Q67UE2	9.2e-61	47.31	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
A2Z1U1	1.2e-60	64.68	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
A2YW03	6.6e-59	49.84	Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6YPD0	1.5e-58	49.84	Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CmaCh08G005560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06710.1	1.7e-70	54.46	homeobox from Arabidopsis thaliana	[more]
AT2G44910.1	1.3e-49	61.98	homeobox-leucine zipper protein 4	[more]
AT5G47370.1	2.4e-48	53.85	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	[more]
AT4G37790.1	2.7e-47	57.22	Homeobox-leucine zipper protein family	[more]
AT2G22800.1	6.0e-47	53.81	Homeobox-leucine zipper protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..255
None	No IPR available	GENE3D	1.10.10.60		coord: 169..215 e-value: 7.1E-20 score: 72.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..168
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 1..296
None	No IPR available	PANTHER	PTHR45714:SF15	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	coord: 1..296
None	No IPR available	CDD	cd14686	bZIP	coord: 212..251 e-value: 0.00667636 score: 32.5173
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 161..223 e-value: 1.0E-15 score: 68.3
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 163..217 e-value: 1.8E-15 score: 56.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 159..219 score: 17.118856
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 163..220 e-value: 1.98146E-15 score: 67.6536
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 219..262 e-value: 5.6E-25 score: 99.0
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 219..253 e-value: 1.6E-10 score: 41.0
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 194..217
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 155..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005560.1	CmaCh08G005560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding