CmaCh08G005020 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G005020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description60S ribosomal protein L44
LocationCma_Chr08: 2881421 .. 2883372 (-)
RNA-Seq ExpressionCmaCh08G005020
SyntenyCmaCh08G005020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTGGTCGCCGATTAGGGTTTCTTCTTAGAGCTAGTAACGACCAGAAGCCGCCATGGTAATCTTGCTTCCACTGTTCTTTTAGTTTTTTTTTTTTCTCCGTCTGTTCATGATTGTTGCTGTTTGGTAATGAGGATTTAAGTGGAAATGAGAAGATGGAAGCATCTTCTTTCCTATGATATTATCCTATTTGATTCCGAACGCTGCAAGCTAAAGCTTCGTAAAGTTATTTTTGATATGAGCTAATATTGACGGTTTTCGGAGGCAGTGAATGTGTCGTAAATATATTTGTATTCTAGGATGTCGGATTGATTGATTCTCGGAATCGTTTTGGTTGTTTTACTTTCGAGAGTTGCCATTTATGAAGGACATTATTCTTTTTGAAGGTTATGTTCTGTGCAGTGTGGTTATCTGTGTATTTTTTAGTTACGTTTGATTTTTTTGAAAGGGTTAATGATGTAGATCTGGATTTAATATGCTCGAATTGACAACCTAATCTGTATGTCTAGACTCGAGAGACAAGATATGCCATAGCAAACTGACTTTGAAATTCAGTGAAGAACATATTAGCTCTGGTTTCTCTGTTCAAGCACTTTTTGTATAATTTCCAATTATGTTTCTCTGCCAGATATTCAGCTAATTTCGAAGTTTTTTTTTTTTATAATTCTCATGGAGTTCTAATTTATGATCTTAAAATTCTTCTCTGTTATATGAAATGATATTGAATTTTTCTACTAATTAGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGTAAGGACAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCCGTCTTTCACAAGAAGGTGAAAATTCCTTCCATATCTATTCTACTCAAACCACATTTTGCTCATTTTCCCTCGAATAAATAATCATGAGAGCTTTAATTCCCCTGCCAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTAACTTACGTGAACTCTTCTTGGATACAACACATAATACCATTGTCTTTCAATTTCTGTTTCATTAAAATGCCTACCTTCACATTTATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAGATGCTTTAACATTGTCATTCACTATATATTGGTTTTTAGGGAGCCAAAATTGTGGGTTTCTTCTGCCCTATGCTTTTTTTTTGGTTATTCTGATATTTGTGAACACTTCTACCTGTTGAATTTTGTTTATTGCTTCAGTTTATAATGGAACAACTAGCTAGCCTCTTCCATTTTTCTGTTTATCACTTGTTTCAACTCCATAGTTCATTATTCTTTCTTCGTTAACAATTGCTATAAGTTCATATTTTGGCAATTTGCTGGTGCTACATTACCATGTTGGATTTGTTTATTGTGGCAGTTATTATTTCTGATGCTTTTATAAGAATTTGGCATTCATTCACGCATATCATAGCCTGTGTTTGTCATGAATATTAGTTTCTTTATATTTTATTTTCACCTTATGAGTTTCCTTGTGTTATTGATTTTTCTTGTCCAACTCGAGCATGTTCAAAAAAACATTCTTGACTTGTAATTTTTGAACTATAATCCTGTAAATTTACGTGAAATGATGAAGTACATGAAAAAAAAGTTGGGGCAGAAAAATGCGTTAGTATCTTCCAAATTCATCCATTTTCTTTTGGCAATCAACAATGGGCACCTGAACAGGTATACGTATAGATTAACAAGAGTCGGAAGAACTATTCACGAGCTGGATTCTTTCTAATTAAAGCATTGCTTAAAGTTCTTGACCTTCGAAATGCAC

mRNA sequence

AGTTGGTCGCCGATTAGGGTTTCTTCTTAGAGCTAGTAACGACCAGAAGCCGCCATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGTAAGGACAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCCGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAGATGCTTTAACATTGTCATTCACTATATATTGGTTTTTAGGGAGCCAAAATTGTGGGTTTCTTCTGCCCTATGCTTTTTTTTTGGTTATTCTGATATTTGTGAACACTTCTACCTGTTGAATTTTGTTTATTGCTTCAGTTTATAATGGAACAACTAGCTAGCCTCTTCCATTTTTCTGTTTATCACTTGTTTCAACTCCATAGTTCATTATTCTTTCTTCGTTAACAATTGCTATAAGTTCATATTTTGGCAATTTGCTGGTGCTACATTACCATGTTGGATTTGTTTATTGTGGCAGTTATTATTTCTGATGCTTTTATAAGAATTTGGCATTCATTCACGCATATCATAGCCTGTGTTTGTCATGAATATTAGTTTCTTTATATTTTATTTTCACCTTATGAGTTTCCTTGTGTTATTGATTTTTCTTGTCCAACTCGAGCATGTTCAAAAAAACATTCTTGACTTGTAATTTTTGAACTATAATCCTGTAAATTTACGTGAAATGATGAAGTACATGAAAAAAAAGTTGGGGCAGAAAAATGCGTTAGTATCTTCCAAATTCATCCATTTTCTTTTGGCAATCAACAATGGGCACCTGAACAGGTATACGTATAGATTAACAAGAGTCGGAAGAACTATTCACGAGCTGGATTCTTTCTAATTAAAGCATTGCTTAAAGTTCTTGACCTTCGAAATGCAC

Coding sequence (CDS)

ATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGTAAGGACAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCCGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAG

Protein sequence

MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Homology
[Close]
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-54
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-51
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-43
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match: A8PCG3 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match: Q9UWE4 (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of CmaCh08G005020 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.1e-53
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of CmaCh08G005020 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.1e-53
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of CmaCh08G005020 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-45
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:
BLAST of CmaCh08G005020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q964991.6e-5498.1060S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
O232901.3e-5193.3360S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
O598706.4e-4378.8560S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3[more]
A8PCG31.9e-4277.8860S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ... [more]
Q9UWE41.9e-4277.8860S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3[more]
BLAST of CmaCh08G005020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23390.19.1e-5393.33Zinc-binding ribosomal protein family protein [more]
AT4G14320.19.1e-5393.33Zinc-binding ribosomal protein family protein [more]
AT4G14320.21.8e-4592.47Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.80coord: 1..105
e-value: 1.7E-51
score: 175.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48
NoneNo IPR availablePANTHERPTHR10369:SF3860S RIBOSOMAL PROTEIN L44-LIKEcoord: 2..105
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 19..93
e-value: 7.8E-35
score: 119.2
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 2..105
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 63..74
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G005020.1CmaCh08G005020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome