CmaCh08G004120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G004120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rapid alkalinization factor-like
Location	Cma_Chr08: 2354289 .. 2354675 (+)
RNA-Seq Expression	CmaCh08G004120
Synteny	CmaCh08G004120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTTTACTTTAGCCAGAGATGAGCAGTTGTATGAAATAATCATAGAGTATAATCATCACTATATTGCCAATAAGAAATTATGCTGAAATAGCAGGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

mRNA sequence

ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

Coding sequence (CDS)

ATGGCAAACTGCATGATGTACGATATGGAATTCGAGATGAACTCCGAACTCAATAGACGCATATTGGCAGATTTATACTACATAACCTATGATGCACTCAAGGCCAACAAGGGGCCATGCTCGTGCCAGACGCAGAGGCAAACCCCTACGACCGTGGCTGCAGTGCCATCACTCGTTGCCGAAGCTAACGACTCATGTCCATGTCTAGAACATATTGTATTTTTCTGTCTCATCCTAAGCATTGACTTCAGCTTCACAAAGGCAATAGCGAAAAGACAACAAACTCATAAATAA

Protein sequence

MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCSCQTQRQTPTTVAAVPSLVAEANDSCPCLEHIVFFCLILSIDFSFTKAIAKRQQTHK

Homology

[Close]

BLAST of CmaCh08G004120 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.2e-04
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 10 EFEMNSELNRRILADLYYITYDALKANKGPCS 42
          EFEM+SE+NRRILA   YI+Y AL+ N  PCS
Sbjct: 55 EFEMDSEINRRILATTKYISYGALRRNTVPCS 86

[Close]

BLAST of CmaCh08G004120 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          +  C+  + EFE++SE NRRILA   YI+Y AL+ N  PCS
Sbjct: 45 IGECIAEEEEFELDSESNRRILATKKYISYGALQKNSVPCS 85

[Close]

BLAST of CmaCh08G004120 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 10  EFEMNSELNRRILADLYYITYDALKANKGPCS 42
           EFEM+SE+NRRILA   YI+Y AL+ N  PCS
Sbjct: 76  EFEMDSEINRRILATRRYISYGALRRNTIPCS 107

[Close]

BLAST of CmaCh08G004120 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 10 EFEMNSELNRRILADLYYITYDALKANKGPCS 42
          EFEM+SE+NRRILA   YI+Y AL+ N  PCS
Sbjct: 55 EFEMDSEINRRILATTKYISYGALRRNTVPCS 86

[Close]

BLAST of CmaCh08G004120 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 10  EFEMNSELNRRILADLYYITYDALKANKGPCS 42
           EFEM+SE+NRRILA   YI+Y AL+ N  PCS
Sbjct: 76  EFEMDSEINRRILATRRYISYGALRRNTIPCS 107

[Close]

BLAST of CmaCh08G004120 vs. TAIR 10
Match: AT1G02900.1 (rapid alkalinization factor 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          +A C+  + E EM+SE+NRRILA   YI+Y +LK N  PCS
Sbjct: 51 IAECIGAEEE-EMDSEINRRILATTKYISYQSLKRNSVPCS 90

[Close]

BLAST of CmaCh08G004120 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1  MANCMMYDMEFEMNSELNRRILADLYYITYDALKANKGPCS 42
          +A C+  + E E +S+++RRILA   YI+Y A++ N  PCS
Sbjct: 49 IAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCS 89

The following BLAST results are available for this feature:

BLAST of CmaCh08G004120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9P8	3.2e-04	65.63	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
Q945T0	5.4e-04	51.22	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
Q9LUS7	5.4e-04	65.63	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]

BLAST of CmaCh08G004120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15800.1	2.3e-05	65.63	ralf-like 33	[more]
AT3G16570.1	3.8e-05	65.63	rapid alkalinization factor 23	[more]
AT1G02900.1	1.5e-04	53.66	rapid alkalinization factor 1	[more]
AT3G05490.1	3.3e-04	43.90	ralf-like 22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 10..42 e-value: 2.4E-7 score: 31.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G004120.1	CmaCh08G004120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
cellular_component	GO:0005576	extracellular region