CmaCh08G003230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G003230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein indeterminate-domain 12-like
Location	Cma_Chr08: 1849759 .. 1852846 (-)
RNA-Seq Expression	CmaCh08G003230
Synteny	CmaCh08G003230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTATCTCTCTATCTCTCTCTCTCTCTCTCTCTCACACACACTCTCTCTCTCTCACTCTCTCTCTCACTCTCTCTCTCTCTATCTCTCTCTCACTCTCTCTATCTCTATCTCTATCTCTCTCTCTCTCTCTCCTTGAAGAATTTCTTTTTTCTTTTAGTTTTTTTTAGTGTTTTTATAGACTTTTTCCCATCTGGGTCTCCTTTTAATTCTCATTCTCTCTTCTTCCCATTTTGCAGCTTCAAATCTCTCTGTCTCTCTCCCTCTCCCTCTCCATTGAAGAAGCCATAGCTGTTAATCTTGAGAAAGCTTATTCCTTTGAGGGTTTTGAAGAACAAGAAGAGAGAGAGAGAGAGAGAGAGAGAATCAAGACATATCCTCCATGTTTTGATGTTTTGTTTTGTTTCTTGACGTGTTTTTCTTCTTCTTCTTCTTCTTCATAATCCAATTCTCATATGTTGTAGCTAATTAAGGGTTATCTCTCTTTCTGAAACCTTGGGTTTTTCTTGTATTAATATCTCTCCCTCTCTCCATTTCTGAAAAAGGGTTTTGATTTTAATATCAACAACAAGAACAAGAGAGAGAGATTTCTTTCTTTCTCTCAAACCCCAAAAAAAAAAACAAAAAAAAAGACCAAATTGATTCATCAAATTTTGGTATTTTGTGTTGTTTTTATCTCTTGGAGTTTTCTCCAAAAAAATGTTTGCCACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGTTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGGTACCAATTCCTGTTTTTTATCATAAAAATCCAAACTTTTTCTTGTTTTAATGCCAATCAGAGCTGTTTCTTGCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTTGTGTGTGAAATTTGCAACAAAGGCTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGTCATAATTTGCCGTGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGGTAACAATCCAAATCCAAATTCAAATTATTTGTTTTTGTTAACCCAAAAGGATTGGTCTTTTGTTTTGATTGCCAGGCCTTTAGTGTCTTTTATTTTGGCAAAACTTTCAAATTCCAATTGATTGACATGTTTTTTAAGGAAAAACATTGCTCAAAATACATTGATCTTTAATGGGTATGGTCTAAATTTGTGAAAAAATTATGAAATTTTGGTCAAAATACATTGATCTTTAGTGGGTATGGTCTAGATTTGTGAAAAAAACTTATGAAAACTTGAGATTTTGATCAAAATACATTAATCTTTAATGGGTATGATCTAGATTTGTAACAAAATTAAGAAATTTTCATCAAGGTATGGTCTAAATTTGTGAAAAAAATCATGAAACTTTGATCAAAATACATAGATTTTTAATGGGTATGGTCTAAATTTGTGAGAAGATTATGAATTTGGGATCAAAATACATTGCTCTTTAATGGGTGTGGACTAGATTTGTGAAAAACTTATAAAAACTTGAAATTTGGATCAAAATACTCAAAGGGTTTGAATTCTGAGAGTGAGAAAAAGTGAAAGGTTTTGAGTGAATTGATTATGAAGAAATGGAAGGGATGGTTTTTTAAGGATAATATTGGATCCGTGACTCCTTTGTATTATTGTGTTTGAGAGAGCTCTGAAATTCTGAACCATTCATCATTATGAAAACTGCAACAAAATCTGATATTTTATCTCAGCTCCGGATTCTTTGTTTGCATGCATGAGCTACAGTGCTCTAAAATTAACCTAAAAAAAAGTGGTCCTTTTGGGATTTCAATTTATGCTAATCATTGCATGCCTAATGTTTTGTGTTTGTGTAGAAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCGGCTAACCAATTCGTCATCGCGCCCGAGGTTGAGGCGGCCGAGGTTGGGGCGGCTACCTCCGCCCAATCTCTTTTCCCTTTTGGTAGTCATAATCAATTCCCTAGCTCTTCGCTGTCACGGTCGCCACAAACTTATATGTCCCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAGCTTTGCCCCTCGCCGGCTCCTCCCCAAGCAACGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCACCACCACCACCAGAAGGCAGCCTCTTCATCCTCCTCTTCCATGATAGCCACACCGTTTAGGAACCTCCACGTGTCGGTGAATCCAGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCGCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTTGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGGGATGCAGGTTAGCATGAGTGTCAAGGATATGCTAACGTACGCTGGAGGATTGGAGATTTTTAAGCCTCATAATAATAATAATAATAATAATAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTATCTCTCTATCTCTCTCTCTCTCTCTCTCTCACACACACTCTCTCTCTCTCACTCTCTCTCTCACTCTCTCTCTCTCTATCTCTCTCTCACTCTCTCTATCTCTATCTCTATCTCTCTCTCTCTCTCTCCTTGAAGAATTTCTTTTTTCTTTTAGTTTTTTTTAGTGTTTTTATAGACTTTTTCCCATCTGGGTCTCCTTTTAATTCTCATTCTCTCTTCTTCCCATTTTGCAGCTTCAAATCTCTCTGTCTCTCTCCCTCTCCCTCTCCATTGAAGAAGCCATAGCTGTTAATCTTGAGAAAGCTTATTCCTTTGAGGGTTTTGAAGAACAAGAAGAGAGAGAGAGAGAGAGAGAGAGAATCAAGACATATCCTCCATGTTTTGATGTTTTGTTTTGTTTCTTGACGTGTTTTTCTTCTTCTTCTTCTTCTTCATAATCCAATTCTCATATGTTGTAGCTAATTAAGGGTTATCTCTCTTTCTGAAACCTTGGGTTTTTCTTGTATTAATATCTCTCCCTCTCTCCATTTCTGAAAAAGGGTTTTGATTTTAATATCAACAACAAGAACAAGAGAGAGAGATTTCTTTCTTTCTCTCAAACCCCAAAAAAAAAAACAAAAAAAAAGACCAAATTGATTCATCAAATTTTGGTATTTTGTGTTGTTTTTATCTCTTGGAGTTTTCTCCAAAAAAATGTTTGCCACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGTTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTTGTGTGTGAAATTTGCAACAAAGGCTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGTCATAATTTGCCGTGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCGGCTAACCAATTCGTCATCGCGCCCGAGGTTGAGGCGGCCGAGGTTGGGGCGGCTACCTCCGCCCAATCTCTTTTCCCTTTTGGTAGTCATAATCAATTCCCTAGCTCTTCGCTGTCACGGTCGCCACAAACTTATATGTCCCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAGCTTTGCCCCTCGCCGGCTCCTCCCCAAGCAACGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCACCACCACCACCAGAAGGCAGCCTCTTCATCCTCCTCTTCCATGATAGCCACACCGTTTAGGAACCTCCACGTGTCGGTGAATCCAGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCGCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTTGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGGGATGCAGGTTAGCATGAGTGTCAAGGATATGCTAACGTACGCTGGAGGATTGGAGATTTTTAAGCCTCATAATAATAATAATAATAATAATAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA

Coding sequence (CDS)

ATGTTTGCCACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGTTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTTGTGTGTGAAATTTGCAACAAAGGCTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGTCATAATTTGCCGTGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCGGCTAACCAATTCGTCATCGCGCCCGAGGTTGAGGCGGCCGAGGTTGGGGCGGCTACCTCCGCCCAATCTCTTTTCCCTTTTGGTAGTCATAATCAATTCCCTAGCTCTTCGCTGTCACGGTCGCCACAAACTTATATGTCCCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAGCTTTGCCCCTCGCCGGCTCCTCCCCAAGCAACGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCACCACCACCACCAGAAGGCAGCCTCTTCATCCTCCTCTTCCATGATAGCCACACCGTTTAGGAACCTCCACGTGTCGGTGAATCCAGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCGCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTTGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGGGATGCAGGTTAGCATGAGTGTCAAGGATATGCTAACGTACGCTGGAGGATTGGAGATTTTTAAGCCTCATAATAATAATAATAATAATAATAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA

Protein sequence

MFATTMSNSTSLSEEVTVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPEVEAAEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHVSVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSLTHQLGPDYATWQKTDRLTRDFLGLTGDGNGGGGGSGGMQVSMSVKDMLTYAGGLEIFKPHNNNNNNNNNNNHSAFGFAEPAANETWDC

Homology

[Close]

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot
Match: O22759 (Protein indeterminate-domain 12 OS=Arabidopsis thaliana OX=3702 GN=IDD12 PE=2 SV=2)

HSP 1 Score: 352.8 bits (904), Expect = 5.9e-96
Identity = 217/423 (51.30%), Postives = 246/423 (58.16%), Query Frame = 0


Query: 28  KIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 87
           K KKKR LPGNPDPDAEVIALSP+TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 51  KPKKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 110

Query: 88  KQRNSKE-VKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAV 147
           KQ+N+KE  KKK YVCPE +C HHHPSRALGDLTGIKKH+CRKHGEKKWKCEKCSK YAV
Sbjct: 111 KQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAV 170

Query: 148 QSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPEVEA 207
           QSDWKAH+K CGTR+YRCDCGTLFSRKD+FITHRAFCDALAEESARL +           
Sbjct: 171 QSDWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHST---------- 230

Query: 208 AEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSH 267
                                 SSS               N  NPNPN            
Sbjct: 231 ----------------------SSS---------------NLTNPNPN----------FQ 290

Query: 268 SHHFHQIPALPLAGSSPSNATNNPFGIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHV 327
            HHF          SS    T++P  I                 S S++ ++TP      
Sbjct: 291 GHHF------MFNKSSSLLFTSSPLFI---------------EPSLSTAALSTP------ 350

Query: 328 SVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSL 387
                 +A LSATALLQKA ++          Q  S+GH  H ++ ++ EF     +  +
Sbjct: 351 -----PTAALSATALLQKATSLS-STTFGGGGQTRSIGH--HRHLTNVNEFLGVDRV-MM 371

Query: 388 THQLGPDY---------ATWQKTDRLTRDFLGLTGDGNGGGGGSGGMQVSMSVKDMLTYA 441
           T     +Y         +TWQK DRLTRDFLGLTG G           VS+   DML YA
Sbjct: 411 TSASSSEYDQLVVDGFTSTWQKADRLTRDFLGLTGHGG---------HVSVRPGDMLEYA 371

[Close]

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot
Match: Q9ZWA6 (Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.6e-88
Identity = 195/368 (52.99%), Postives = 238/368 (64.67%), Query Frame = 0


Query: 24  LPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNL 83
           L P  +KKKR+LPGNPDP+AEVIALSP+TL+ATNRF+CEIC KGFQRDQNLQLHRRGHNL
Sbjct: 35  LNPPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNL 94

Query: 84  PWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKV 143
           PWKLKQR SKEV+K+ YVCPE SCVHHHP+RALGDLTGIKKH+CRKHGEKKWKCEKC+K 
Sbjct: 95  PWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKR 154

Query: 144 YAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPE 203
           YAVQSDWKAHSKTCGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+ARL+A   + +  
Sbjct: 155 YAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFA 214

Query: 204 VEAAE-------VGAATSAQSL-----FPFG-------SHNQFPSSSLSRSPQTYM---- 263
             A         +G    + SL     FPFG        H+QFP ++ +   Q  M    
Sbjct: 215 ATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPAS 274

Query: 264 SLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQDH--- 323
           +L+ W      N N  HQ +  ED  +   H          SP    N  FG   +H   
Sbjct: 275 TLSLW---SGGNINH-HQQVTIEDRMAPQPH----------SPQEDYNWVFGNANNHGEL 334

Query: 324 ---------HRRHHHHHQKAASSSSSSMIATP--FRNLHVSVNPAMS-----AHLSATAL 350
                    H  + +  Q   +++ ++ ++ P  F ++      A +     A++SATAL
Sbjct: 335 ITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATAL 388

[Close]

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot
Match: Q8H1F5 (Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 5.9e-88
Identity = 158/238 (66.39%), Postives = 183/238 (76.89%), Query Frame = 0


Query: 24  LPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNL 83
           +P   +K+KR+ PGNPDP+AEV+ALSP+TL+ATNRF+CE+CNKGFQRDQNLQLH+RGHNL
Sbjct: 57  VPQSSLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNL 116

Query: 84  PWKLKQRNSKE-VKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSK 143
           PWKLKQR++K+ V+KK YVCPEP CVHHHPSRALGDLTGIKKH+ RKHGEKKWKCEKCSK
Sbjct: 117 PWKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSK 176

Query: 144 VYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAP 203
            YAVQSDWKAH+KTCGT+EY+CDCGTLFSR+DSFITHRAFCDALAEESAR   N  +I  
Sbjct: 177 KYAVQSDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQA 236

Query: 204 EVEAAEVGAATSAQSLFPFGSHNQFPSSSL------SRSPQTYMSLNPWDNPQNPNPN 255
                     T     F   S N   +S+L        S   Y ++ PW    NPNPN
Sbjct: 237 SNSPHHHHHQTQQNIGFSSSSQNIISNSNLHGPMKQEESQHHYQNIPPWLISSNPNPN 294

[Close]

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot
Match: Q9FFH3 (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 6.6e-87
Identity = 188/359 (52.37%), Postives = 229/359 (63.79%), Query Frame = 0


Query: 2   FATTMSNSTSLSEEVTVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVC 61
           FA   S+ST   +E      SL+ P  +KKKR+LPGNPDP+AEVIALSP TL+ATNRF+C
Sbjct: 15  FAQPQSSSTLDHDE------SLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLC 74

Query: 62  EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTG 121
           E+C KGFQRDQNLQLHRRGHNLPWKLKQR SKEV+K+ YVCPE +CVHHH SRALGDLTG
Sbjct: 75  EVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTG 134

Query: 122 IKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRA 181
           IKKH+CRKHGEKKW CEKC+K YAVQSDWKAHSKTCGTREYRCDCGT+FSR+DSFITHRA
Sbjct: 135 IKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRA 194

Query: 182 FCDALAEESARLSANQFVIAPEVEAAEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMS 241
           FCDALAEE+A+++A    ++     A  GA  S    + +      P             
Sbjct: 195 FCDALAEETAKINA----VSHLNGLAAAGAPGSVNLNYQYLMGTFIP------------P 254

Query: 242 LNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQ------ 301
           L P+      NPN  HQ  +P  S S          +A   P    +  FG  +      
Sbjct: 255 LQPFVPQPQTNPNHHHQHFQPPTSSSLSLWM--GQDIAPPQPQPDYDWVFGNAKAASACI 314

Query: 302 DHHRRHHHHHQKAASSSSSSMIATPFRNLHVS-----VNPAMSAHLSATALLQKAATVG 350
           D++  H     + A++S ++       +L  S      N   + ++SATALLQKAA +G
Sbjct: 315 DNNNTHDEQITQNANASLTTTTTLSAPSLFSSDQPQNANANSNVNMSATALLQKAAEIG 349

[Close]

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot
Match: Q8GYC1 (Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD4 PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.2e-85
Identity = 209/472 (44.28%), Postives = 269/472 (56.99%), Query Frame = 0


Query: 21  NSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRG 80
           NS  PP   KK+R+ PGNP+PDAEV+ALSP+TL+ATNRF+C++CNKGFQR+QNLQLHRRG
Sbjct: 47  NSSAPPP--KKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRG 106

Query: 81  HNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKC 140
           HNLPWKLKQ+++KEVK+K Y+CPEP+CVHH PSRALGDLTGIKKHY RKHGEKKWKCEKC
Sbjct: 107 HNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKC 166

Query: 141 SKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVI 200
           SK YAVQSDWKAHSKTCGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +E+AR   N  V 
Sbjct: 167 SKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETAR---NPTVS 226

Query: 201 APEVEAAEVGAAT----------SAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDN--- 260
              + AA  G  +          SA S      H  F  + L       +++   DN   
Sbjct: 227 FTSMTAASSGVGSGGIYGRLGGGSALSHHHLSDHPNFGFNPL---VGYNLNIASSDNRRD 286

Query: 261 --PQNPNPNQTHQIIK--------PEDSHSHHFHQ---IPALPLAG-SSPSNATNNPF-- 320
             PQ+ NPN   Q           P +++    +Q   I   P+   +  S+ TNN F  
Sbjct: 287 FIPQSSNPNFLIQSASSQGMLNTTPNNNNQSFMNQHGLIQFDPVDNINLKSSGTNNSFFN 346

Query: 321 -GIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHVSVNPAMSAHLSATALLQKAATVG- 380
            G  Q+        + K + +S  S+ +T     H   N    +++SATALLQKA  +G 
Sbjct: 347 LGFFQE--------NTKNSETSLPSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGS 406

Query: 381 ---------VGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSLTHQLGP-------- 431
                       + SS +    + +  HF    I E     ++  L + L          
Sbjct: 407 VTSNDPSALFRGLASSSNSSSVIAN--HFGGGRIMENDNNGNLQGLMNSLAAVNGGGGSG 466

[Close]

BLAST of CmaCh08G003230 vs. TAIR 10
Match: AT4G02670.1 (indeterminate(ID)-domain 12 )

HSP 1 Score: 352.8 bits (904), Expect = 4.2e-97
Identity = 217/423 (51.30%), Postives = 246/423 (58.16%), Query Frame = 0


Query: 28  KIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 87
           K KKKR LPGNPDPDAEVIALSP+TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 51  KPKKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 110

Query: 88  KQRNSKE-VKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAV 147
           KQ+N+KE  KKK YVCPE +C HHHPSRALGDLTGIKKH+CRKHGEKKWKCEKCSK YAV
Sbjct: 111 KQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAV 170

Query: 148 QSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPEVEA 207
           QSDWKAH+K CGTR+YRCDCGTLFSRKD+FITHRAFCDALAEESARL +           
Sbjct: 171 QSDWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHST---------- 230

Query: 208 AEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSH 267
                                 SSS               N  NPNPN            
Sbjct: 231 ----------------------SSS---------------NLTNPNPN----------FQ 290

Query: 268 SHHFHQIPALPLAGSSPSNATNNPFGIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHV 327
            HHF          SS    T++P  I                 S S++ ++TP      
Sbjct: 291 GHHF------MFNKSSSLLFTSSPLFI---------------EPSLSTAALSTP------ 350

Query: 328 SVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSL 387
                 +A LSATALLQKA ++          Q  S+GH  H ++ ++ EF     +  +
Sbjct: 351 -----PTAALSATALLQKATSLS-STTFGGGGQTRSIGH--HRHLTNVNEFLGVDRV-MM 371

Query: 388 THQLGPDY---------ATWQKTDRLTRDFLGLTGDGNGGGGGSGGMQVSMSVKDMLTYA 441
           T     +Y         +TWQK DRLTRDFLGLTG G           VS+   DML YA
Sbjct: 411 TSASSSEYDQLVVDGFTSTWQKADRLTRDFLGLTGHGG---------HVSVRPGDMLEYA 371

[Close]

BLAST of CmaCh08G003230 vs. TAIR 10
Match: AT1G03840.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-89
Identity = 195/368 (52.99%), Postives = 238/368 (64.67%), Query Frame = 0


Query: 24  LPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNL 83
           L P  +KKKR+LPGNPDP+AEVIALSP+TL+ATNRF+CEIC KGFQRDQNLQLHRRGHNL
Sbjct: 35  LNPPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNL 94

Query: 84  PWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKV 143
           PWKLKQR SKEV+K+ YVCPE SCVHHHP+RALGDLTGIKKH+CRKHGEKKWKCEKC+K 
Sbjct: 95  PWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKR 154

Query: 144 YAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPE 203
           YAVQSDWKAHSKTCGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+ARL+A   + +  
Sbjct: 155 YAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFA 214

Query: 204 VEAAE-------VGAATSAQSL-----FPFG-------SHNQFPSSSLSRSPQTYM---- 263
             A         +G    + SL     FPFG        H+QFP ++ +   Q  M    
Sbjct: 215 ATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPAS 274

Query: 264 SLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQDH--- 323
           +L+ W      N N  HQ +  ED  +   H          SP    N  FG   +H   
Sbjct: 275 TLSLW---SGGNINH-HQQVTIEDRMAPQPH----------SPQEDYNWVFGNANNHGEL 334

Query: 324 ---------HRRHHHHHQKAASSSSSSMIATP--FRNLHVSVNPAMS-----AHLSATAL 350
                    H  + +  Q   +++ ++ ++ P  F ++      A +     A++SATAL
Sbjct: 335 ITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATAL 388

[Close]

BLAST of CmaCh08G003230 vs. TAIR 10
Match: AT1G55110.1 (indeterminate(ID)-domain 7 )

HSP 1 Score: 326.2 bits (835), Expect = 4.2e-89
Identity = 158/238 (66.39%), Postives = 183/238 (76.89%), Query Frame = 0


Query: 24  LPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNL 83
           +P   +K+KR+ PGNPDP+AEV+ALSP+TL+ATNRF+CE+CNKGFQRDQNLQLH+RGHNL
Sbjct: 57  VPQSSLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNL 116

Query: 84  PWKLKQRNSKE-VKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSK 143
           PWKLKQR++K+ V+KK YVCPEP CVHHHPSRALGDLTGIKKH+ RKHGEKKWKCEKCSK
Sbjct: 117 PWKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSK 176

Query: 144 VYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAP 203
            YAVQSDWKAH+KTCGT+EY+CDCGTLFSR+DSFITHRAFCDALAEESAR   N  +I  
Sbjct: 177 KYAVQSDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQA 236

Query: 204 EVEAAEVGAATSAQSLFPFGSHNQFPSSSL------SRSPQTYMSLNPWDNPQNPNPN 255
                     T     F   S N   +S+L        S   Y ++ PW    NPNPN
Sbjct: 237 SNSPHHHHHQTQQNIGFSSSSQNIISNSNLHGPMKQEESQHHYQNIPPWLISSNPNPN 294

[Close]

BLAST of CmaCh08G003230 vs. TAIR 10
Match: AT5G44160.1 (C2H2-like zinc finger protein )

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-88
Identity = 188/359 (52.37%), Postives = 229/359 (63.79%), Query Frame = 0


Query: 2   FATTMSNSTSLSEEVTVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVC 61
           FA   S+ST   +E      SL+ P  +KKKR+LPGNPDP+AEVIALSP TL+ATNRF+C
Sbjct: 15  FAQPQSSSTLDHDE------SLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLC 74

Query: 62  EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTG 121
           E+C KGFQRDQNLQLHRRGHNLPWKLKQR SKEV+K+ YVCPE +CVHHH SRALGDLTG
Sbjct: 75  EVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTG 134

Query: 122 IKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRA 181
           IKKH+CRKHGEKKW CEKC+K YAVQSDWKAHSKTCGTREYRCDCGT+FSR+DSFITHRA
Sbjct: 135 IKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRA 194

Query: 182 FCDALAEESARLSANQFVIAPEVEAAEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMS 241
           FCDALAEE+A+++A    ++     A  GA  S    + +      P             
Sbjct: 195 FCDALAEETAKINA----VSHLNGLAAAGAPGSVNLNYQYLMGTFIP------------P 254

Query: 242 LNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQ------ 301
           L P+      NPN  HQ  +P  S S          +A   P    +  FG  +      
Sbjct: 255 LQPFVPQPQTNPNHHHQHFQPPTSSSLSLWM--GQDIAPPQPQPDYDWVFGNAKAASACI 314

Query: 302 DHHRRHHHHHQKAASSSSSSMIATPFRNLHVS-----VNPAMSAHLSATALLQKAATVG 350
           D++  H     + A++S ++       +L  S      N   + ++SATALLQKAA +G
Sbjct: 315 DNNNTHDEQITQNANASLTTTTTLSAPSLFSSDQPQNANANSNVNMSATALLQKAAEIG 349

[Close]

BLAST of CmaCh08G003230 vs. TAIR 10
Match: AT2G02080.1 (indeterminate(ID)-domain 4 )

HSP 1 Score: 318.5 bits (815), Expect = 8.8e-87
Identity = 209/472 (44.28%), Postives = 269/472 (56.99%), Query Frame = 0


Query: 21  NSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRG 80
           NS  PP   KK+R+ PGNP+PDAEV+ALSP+TL+ATNRF+C++CNKGFQR+QNLQLHRRG
Sbjct: 47  NSSAPPP--KKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRG 106

Query: 81  HNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKC 140
           HNLPWKLKQ+++KEVK+K Y+CPEP+CVHH PSRALGDLTGIKKHY RKHGEKKWKCEKC
Sbjct: 107 HNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKC 166

Query: 141 SKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVI 200
           SK YAVQSDWKAHSKTCGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +E+AR   N  V 
Sbjct: 167 SKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETAR---NPTVS 226

Query: 201 APEVEAAEVGAAT----------SAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDN--- 260
              + AA  G  +          SA S      H  F  + L       +++   DN   
Sbjct: 227 FTSMTAASSGVGSGGIYGRLGGGSALSHHHLSDHPNFGFNPL---VGYNLNIASSDNRRD 286

Query: 261 --PQNPNPNQTHQIIK--------PEDSHSHHFHQ---IPALPLAG-SSPSNATNNPF-- 320
             PQ+ NPN   Q           P +++    +Q   I   P+   +  S+ TNN F  
Sbjct: 287 FIPQSSNPNFLIQSASSQGMLNTTPNNNNQSFMNQHGLIQFDPVDNINLKSSGTNNSFFN 346

Query: 321 -GIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHVSVNPAMSAHLSATALLQKAATVG- 380
            G  Q+        + K + +S  S+ +T     H   N    +++SATALLQKA  +G 
Sbjct: 347 LGFFQE--------NTKNSETSLPSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGS 406

Query: 381 ---------VGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSLTHQLGP-------- 431
                       + SS +    + +  HF    I E     ++  L + L          
Sbjct: 407 VTSNDPSALFRGLASSSNSSSVIAN--HFGGGRIMENDNNGNLQGLMNSLAAVNGGGGSG 466

The following BLAST results are available for this feature:

BLAST of CmaCh08G003230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22759	5.9e-96	51.30	Protein indeterminate-domain 12 OS=Arabidopsis thaliana OX=3702 GN=IDD12 PE=2 SV...	[more]
Q9ZWA6	1.6e-88	52.99	Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1	[more]
Q8H1F5	5.9e-88	66.39	Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1	[more]
Q9FFH3	6.6e-87	52.37	Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=1 SV=1	[more]
Q8GYC1	1.2e-85	44.28	Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh08G003230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02670.1	4.2e-97	51.30	indeterminate(ID)-domain 12	[more]
AT1G03840.1	1.1e-89	52.99	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G55110.1	4.2e-89	66.39	indeterminate(ID)-domain 7	[more]
AT5G44160.1	4.7e-88	52.37	C2H2-like zinc finger protein	[more]
AT2G02080.1	8.8e-87	44.28	indeterminate(ID)-domain 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 135..155 e-value: 120.0 score: 3.7 coord: 59..81 e-value: 0.017 score: 24.3 coord: 100..130 e-value: 280.0 score: 0.5
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 61..81
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 59..81 score: 10.948853
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 128..193 e-value: 4.0E-5 score: 25.5
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 38..107 e-value: 2.6E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..474
None	No IPR available	PANTHER	PTHR10593:SF136	PROTEIN INDETERMINATE-DOMAIN 12	coord: 21..454
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 21..454
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 58..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G003230.1	CmaCh08G003230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding