CmaCh08G003060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G003060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box/LRR-repeat protein 17-like
Location	Cma_Chr08: 1750507 .. 1754562 (-)
RNA-Seq Expression	CmaCh08G003060
Synteny	CmaCh08G003060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCGACCATTTCTCCCGCGCACTTCCTCTCTCATTTATCCCAATTAACCCTTTTTTTCCTCCATCTCTCTCTCTCTCTCACGATTCTCTCCGCCGCCGCTATGGAGCGTTTCCACCACCCCCAAAGCGGCGCCACCACCACTAACAACTCCGATCTCAAGCGCGGCAAGAAGCGTGGAAGCTATAACTGTGGCCGATGTGGCCTCCCCAAGAAAGGCCATGTCTGTAACCTTACTTCCTCAACCACTAATACCGCTACCACTTCCCCTCCCACTACCGATTCTTCCAATTCCGCTCGCTGTTCCACCATTGACCCCTCATCTCACGTTCATCTACGCCGCGCCCTCTCCTTTGATGATGCTGATGACCTCCGCAGCGGCTTCCACTCTGATTTCGATGACATTGACGAGGCTGAGCCGGTCTTTGATTATCCCGATATCGATCCGGATTCTTCTGGATGCTTGCCTGCGAGTTGTCTTTGGGAGATTTTGAGGAGGCTGCCGCCGGCTGGGATTTTGTCGGCGGCGAGGGTTTGTAAGGGCTGGAGAGAGACTACCAAGAAGATATGGAGGGCGGCGGAGGTGTTGAGATTGAGAGTTCCGCCTAAGGCTCCGTTTGGATTTGTTGGTTCATTGTTGCAGAAGTGTTCTGGACTTGTGACACTCTCGCTTAGATTGGAAAGGTTAGGGTTTTTGATCGGACACGGTTTAGATCTATCGGTTTATTTGACGATCTGGTTCTGATGATTTAATGTGACAATAACTTTAATTGAACTGTTAAAAATCAACTGGATCCGGACGTTGTTGAACTATCTGTGACTAAAAGTGGGTAGATGAAGTAATTTGTGATTTGATCTATGATGAACTAGAGTAATGAGGACCTGATTTTTTTGAATCCATGATTTTTTATGGCATTAGTACTTTTAGTTAATGATTTTAGATTCCGATGAAATTTATCCGTGGTTGACTAGGTTGTTTTTCAACAACTCCCTAAATTTAGCTTGCAATTACCGACTTGCTAGCTCATAAGATTTTTTTTTACTGCTCTTTTTACCATTTTTTAATGAGATTTGTACGGAATTTTGGAGATCATCCTTATTGAATACTCTTAGGAAATGTAGTTGGAAGATCTGAGTGTTTTAACATATAAATTCATGTTGTAGCAGCGATTTGGATTCGATGATGTTGGCTTGCATTGCGTTCTCATGTCCTAATCTTGAAGCTCTGGAGATCACTAAGTCCCAATCATCAATAAATCGCATCACAGGGTAATTCAATACCAATGTATCTGACTTTATCTAGTACTGATTCTGTTTTGTTTTATGTTTTTTTTTGTTGATCTGTGATTATAATTGACTATGTGAAAGTGGTGAGATGAGAAAAATAGTGACAACTTAAGTTCATAGCTAAAAAGTGTGATCCAATGCCTGATGTTTGGCCATTTTCTTTTTATTTCTAATATACAGTGGTGAGCTTGGTCGCTTTGTTGCTGATAAACGTTGCCTTAAGAGTCTTAAGATGGAAGGTTGTTCTAGTTTGGGGAGTTTTTCCCTCTGTTCATCAAGTCTCAGCACACTATGGCTTTCTGATCTTTGCTCCCTTTCTAAGATGGTTATATCTCTTTTCCTTGTATCTCTTACAATGACTAGCTCTCTGGAATAGAGATTTGCTCATCCACTTACTATTTTGACAGGCTTTCAATTGCCCCAATTTAAAGGAGATTTCTTTGGAGTTTTCTCGTCATGAAAATGATAGGACTGATCTTGTTGCGATGGTTGATGGCATGGTAAGGGGCTGCCCAAGATTACAGAATGTACACATTTCATCATTCCGTCTATCTCATGCTGTAGTACTAGCACTCACAGCTGGACAATTGAGGTTTGTGCTACTAGTACTATTTTAGCATTGCAATGAGCTAGTGCCAAGTAATTTTTCTTCCTTTCTTGATTGTTCAGGGTAGATCCTTTGTTTTCATGAATATTTACCGTGGATTGATGTTTTTCTGTTTTTGCATTGATCAGGGGATTGCGGATGCTGTCACTTGTTCTTGGAGCTGACATCACTGATGCATCTGTTGCTTCTATTGCTTCAACCTATCCAAACTTGGAATTGCTTGATCTTAGTGGGTATGCATTTTTTTAACGAATCTCACGCCATTGTAATCTTGAGATTAATCTAGCAAGTTCCCTCAAGGGTTGATGCAAGGAGTTAATGTAAAGAATCACATGTTTATGTGAATAATAGAACTGATCTTGCAGTGAATTGCTGAAGAATTTATTATCTCCTGCATTTAAAATGCTTACTTAAATCTCTAAAGCTAGCCTTTTGATATCAAACTATTCTGAAGCCATAATTAGTATGAAAAAGATTATCTGAATCGACCATTGATTTGGTTTTCAGGTCCAGCATCAGTGACAGTGGCATAGGAATGATCTGTAATGTATTCCCAGATACATTGTCTAGATTTCTCCTTGCCCTTTGTCCTAACATCACTTCAAGTACTTTCAAATCTCTATATCTGATTTTTGTGTAATTTCATTTTTTATTTAAACTTTTGAGTATGCTGGTTCTTGGTTTCCGATCACTGATGAAGTTGCATCCTCCTCTTCAGGTGGCATACAATTTGCAACAGCTGAATTGCCACTTCTTGAACTCATGGATTGTGGGATGACTATTTGTGACCCTAATTCTCGGGATTCTACATCTGAAATTGGTGATCATGAGTTATCTAAACCGCCAAACTCCAAGTTTCACCTCATTTACCAGAAGCTGATCATCAAACACAACCACCTGAAAAAGCTGAGTTTATGGGGTTGTTCCGGTTTAGATGTGAGACTCTTTAGTCATTAGCTATCAAATGTTTACGCCATTATTTTCTGCATTCTTAATCTGTTCTTTATATGCAGGCTCTATATCTTAACTGCCCACAACTAGATGATCTCAATCTCAACTCTTGCAAGAATTTGCATCCAGGTGATTATTTTTTCCTTGCCTCTTAATTGATGATCTCCTTGAAACTGACTATAATCCATATATCGGATTGCAAGTTCTGCACCTAATAATGTTGAATATATGTGTTCTCCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGTAATGTGCATGCATCAGATTGCGAGGAGTTATTAGTTGGAGCTATTCGAAGTCAGGTACACAAATTAGCTACTTCACTTTATTCTCCTATTGCATTCGAGGATTGGTTATCTGGAAGAGTGGGAACAATCCGTGTACATGGTAGATGGCTCAAGGATGGGCTAGAATTCTGATGTTAATGTGCATCTTTCTTTTGTCCATTTCAGCTTAAAAAGGCTGCTTCACCCGAGGAGAACCTACTCTCATGTAAACGCTTGGCAGATGGCTCAAAACGTATTAGAGTTCCACCTCTTGTCAGTTCACTGGTAAGTCAGAAATTCTTGTTATTAGTATGGATGTCTAAACCAAAAGGTTATTATTAAGAACATATGCATAGAAAGATCAAATATATAACTTAACCATCAGCTTAACACAATTCACGTAATATCATTTCTTTCTTAATTGATGTTATCAATTCACATGTTACGACTTCATGATTCAATTAATATCCAAATCTACACATGCTGGGAATATTAAAAAGTATATACATAAAAGGATCAGATATTTATGAACTTCGAGTTGTTGAATTTAGTAGTCATCCTGTTTTCTTTTCCGTGTTTGTTGGCAGTCATCTGATAATGGTTCGAAACGAAGAAGGGTAGGAAGCCATCACTGTAATATTCATGTGTGTTGAACAGTCGAGAAGCAGTCTTATTTTTTCTGGGTGTACACTGATAATATTTGTGGGTTGTGAATTATTATTAGCCAATGATGGCAGAGTGCACCATGCCAGGCCATTTGGGTTATATAGGCATAGTGCCTCGCTTCTGTAAACATTTCGCTTTGTAACAGCCAATCTTCCTAAAACCTCATGTTTCAGTATGGAGTATAGTACCCAGAGCCAAGCCATAGATGGAAAACTCATTCAGGGTTATAAGTTAATTTTTTTTCCTCAATAAAG

mRNA sequence

AAATCGACCATTTCTCCCGCGCACTTCCTCTCTCATTTATCCCAATTAACCCTTTTTTTCCTCCATCTCTCTCTCTCTCTCACGATTCTCTCCGCCGCCGCTATGGAGCGTTTCCACCACCCCCAAAGCGGCGCCACCACCACTAACAACTCCGATCTCAAGCGCGGCAAGAAGCGTGGAAGCTATAACTGTGGCCGATGTGGCCTCCCCAAGAAAGGCCATGTCTGTAACCTTACTTCCTCAACCACTAATACCGCTACCACTTCCCCTCCCACTACCGATTCTTCCAATTCCGCTCGCTGTTCCACCATTGACCCCTCATCTCACGTTCATCTACGCCGCGCCCTCTCCTTTGATGATGCTGATGACCTCCGCAGCGGCTTCCACTCTGATTTCGATGACATTGACGAGGCTGAGCCGGTCTTTGATTATCCCGATATCGATCCGGATTCTTCTGGATGCTTGCCTGCGAGTTGTCTTTGGGAGATTTTGAGGAGGCTGCCGCCGGCTGGGATTTTGTCGGCGGCGAGGGTTTGTAAGGGCTGGAGAGAGACTACCAAGAAGATATGGAGGGCGGCGGAGGTGTTGAGATTGAGAGTTCCGCCTAAGGCTCCGTTTGGATTTGTTGGTTCATTGTTGCAGAAGTGTTCTGGACTTGTGACACTCTCGCTTAGATTGGAAAGCAGCGATTTGGATTCGATGATGTTGGCTTGCATTGCGTTCTCATGTCCTAATCTTGAAGCTCTGGAGATCACTAAGTCCCAATCATCAATAAATCGCATCACAGGTGGTGAGCTTGGTCGCTTTGTTGCTGATAAACGTTGCCTTAAGAGTCTTAAGATGGAAGGTTGTTCTAGTTTGGGGAGTTTTTCCCTCTGTTCATCAAGTCTCAGCACACTATGGCTTTCTGATCTTTGCTCCCTTTCTAAGATGGCTTTCAATTGCCCCAATTTAAAGGAGATTTCTTTGGAGTTTTCTCGTCATGAAAATGATAGGACTGATCTTGTTGCGATGGTTGATGGCATGGTAAGGGGCTGCCCAAGATTACAGAATGTACACATTTCATCATTCCGTCTATCTCATGCTGTAGTACTAGCACTCACAGCTGGACAATTGAGGGGATTGCGGATGCTGTCACTTGTTCTTGGAGCTGACATCACTGATGCATCTGTTGCTTCTATTGCTTCAACCTATCCAAACTTGGAATTGCTTGATCTTAGTGGGTCCAGCATCAGTGACAGTGGCATAGGAATGATCTGTAATGTATTCCCAGATACATTGTCTAGATTTCTCCTTGCCCTTTGTCCTAACATCACTTCAATTGCATCCTCCTCTTCAGGTGGCATACAATTTGCAACAGCTGAATTGCCACTTCTTGAACTCATGGATTGTGGGATGACTATTTGTGACCCTAATTCTCGGGATTCTACATCTGAAATTGGTGATCATGAGTTATCTAAACCGCCAAACTCCAAGTTTCACCTCATTTACCAGAAGCTGATCATCAAACACAACCACCTGAAAAAGCTGAGTTTATGGGGTTGTTCCGGTTTAGATGCTCTATATCTTAACTGCCCACAACTAGATGATCTCAATCTCAACTCTTGCAAGAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGTAATGTGCATGCATCAGATTGCGAGGAGTTATTAGTTGGAGCTATTCGAAGTCAGCTTAAAAAGGCTGCTTCACCCGAGGAGAACCTACTCTCATGTAAACGCTTGGCAGATGGCTCAAAACGTATTAGAGTTCCACCTCTTGTCAGTTCACTGTCATCTGATAATGGTTCGAAACGAAGAAGGGTAGGAAGCCATCACTGTAATATTCATGTGTGTTGAACAGTCGAGAAGCAGTCTTATTTTTTCTGGGTGTACACTGATAATATTTGTGGGTTGTGAATTATTATTAGCCAATGATGGCAGAGTGCACCATGCCAGGCCATTTGGGTTATATAGGCATAGTGCCTCGCTTCTGTAAACATTTCGCTTTGTAACAGCCAATCTTCCTAAAACCTCATGTTTCAGTATGGAGTATAGTACCCAGAGCCAAGCCATAGATGGAAAACTCATTCAGGGTTATAAGTTAATTTTTTTTCCTCAATAAAG

Coding sequence (CDS)

ATGGAGCGTTTCCACCACCCCCAAAGCGGCGCCACCACCACTAACAACTCCGATCTCAAGCGCGGCAAGAAGCGTGGAAGCTATAACTGTGGCCGATGTGGCCTCCCCAAGAAAGGCCATGTCTGTAACCTTACTTCCTCAACCACTAATACCGCTACCACTTCCCCTCCCACTACCGATTCTTCCAATTCCGCTCGCTGTTCCACCATTGACCCCTCATCTCACGTTCATCTACGCCGCGCCCTCTCCTTTGATGATGCTGATGACCTCCGCAGCGGCTTCCACTCTGATTTCGATGACATTGACGAGGCTGAGCCGGTCTTTGATTATCCCGATATCGATCCGGATTCTTCTGGATGCTTGCCTGCGAGTTGTCTTTGGGAGATTTTGAGGAGGCTGCCGCCGGCTGGGATTTTGTCGGCGGCGAGGGTTTGTAAGGGCTGGAGAGAGACTACCAAGAAGATATGGAGGGCGGCGGAGGTGTTGAGATTGAGAGTTCCGCCTAAGGCTCCGTTTGGATTTGTTGGTTCATTGTTGCAGAAGTGTTCTGGACTTGTGACACTCTCGCTTAGATTGGAAAGCAGCGATTTGGATTCGATGATGTTGGCTTGCATTGCGTTCTCATGTCCTAATCTTGAAGCTCTGGAGATCACTAAGTCCCAATCATCAATAAATCGCATCACAGGTGGTGAGCTTGGTCGCTTTGTTGCTGATAAACGTTGCCTTAAGAGTCTTAAGATGGAAGGTTGTTCTAGTTTGGGGAGTTTTTCCCTCTGTTCATCAAGTCTCAGCACACTATGGCTTTCTGATCTTTGCTCCCTTTCTAAGATGGCTTTCAATTGCCCCAATTTAAAGGAGATTTCTTTGGAGTTTTCTCGTCATGAAAATGATAGGACTGATCTTGTTGCGATGGTTGATGGCATGGTAAGGGGCTGCCCAAGATTACAGAATGTACACATTTCATCATTCCGTCTATCTCATGCTGTAGTACTAGCACTCACAGCTGGACAATTGAGGGGATTGCGGATGCTGTCACTTGTTCTTGGAGCTGACATCACTGATGCATCTGTTGCTTCTATTGCTTCAACCTATCCAAACTTGGAATTGCTTGATCTTAGTGGGTCCAGCATCAGTGACAGTGGCATAGGAATGATCTGTAATGTATTCCCAGATACATTGTCTAGATTTCTCCTTGCCCTTTGTCCTAACATCACTTCAATTGCATCCTCCTCTTCAGGTGGCATACAATTTGCAACAGCTGAATTGCCACTTCTTGAACTCATGGATTGTGGGATGACTATTTGTGACCCTAATTCTCGGGATTCTACATCTGAAATTGGTGATCATGAGTTATCTAAACCGCCAAACTCCAAGTTTCACCTCATTTACCAGAAGCTGATCATCAAACACAACCACCTGAAAAAGCTGAGTTTATGGGGTTGTTCCGGTTTAGATGCTCTATATCTTAACTGCCCACAACTAGATGATCTCAATCTCAACTCTTGCAAGAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGTAATGTGCATGCATCAGATTGCGAGGAGTTATTAGTTGGAGCTATTCGAAGTCAGCTTAAAAAGGCTGCTTCACCCGAGGAGAACCTACTCTCATGTAAACGCTTGGCAGATGGCTCAAAACGTATTAGAGTTCCACCTCTTGTCAGTTCACTGTCATCTGATAATGGTTCGAAACGAAGAAGGGTAGGAAGCCATCACTGTAATATTCATGTGTGTTGA

Protein sequence

MERFHHPQSGATTTNNSDLKRGKKRGSYNCGRCGLPKKGHVCNLTSSTTNTATTSPPTTDSSNSARCSTIDPSSHVHLRRALSFDDADDLRSGFHSDFDDIDEAEPVFDYPDIDPDSSGCLPASCLWEILRRLPPAGILSAARVCKGWRETTKKIWRAAEVLRLRVPPKAPFGFVGSLLQKCSGLVTLSLRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFVADKRCLKSLKMEGCSSLGSFSLCSSSLSTLWLSDLCSLSKMAFNCPNLKEISLEFSRHENDRTDLVAMVDGMVRGCPRLQNVHISSFRLSHAVVLALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLELLDLSGSSISDSGIGMICNVFPDTLSRFLLALCPNITSIASSSSGGIQFATAELPLLELMDCGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQKLIIKHNHLKKLSLWGCSGLDALYLNCPQLDDLNLNSCKNLHPERLLLQCPSLRNVHASDCEELLVGAIRSQLKKAASPEENLLSCKRLADGSKRIRVPPLVSSLSSDNGSKRRRVGSHHCNIHVC

Homology

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BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot
Match: Q8W104 (F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana OX=3702 GN=FBL17 PE=1 SV=1)

HSP 1 Score: 613.6 bits (1581), Expect = 2.3e-174
Identity = 350/581 (60.24%), Postives = 412/581 (70.91%), Query Frame = 0


Query: 23  KKRGSYNCGRCGLPKKGHVCNLTS--STTNTATTSPPTTDSSNSARCS-------TIDPS 82
           K RGSYNCGRCG PKKGHVC LT+      T   S P +  S +A  S       T  PS
Sbjct: 27  KNRGSYNCGRCGQPKKGHVCLLTAPPDIPTTPIASEPVSCISAAASSSRSTVLSLTAAPS 86

Query: 83  SH---VHLRRALSFDDADDLRSGFHSDFDDIDEAEPVFDYP-DIDPDSSGCLPASCLWEI 142
           S     HLRRALSFDD D   S    D  D+D A    D   D D    G   A  LWE+
Sbjct: 87  SRQTFTHLRRALSFDDVDARNS---LDESDLDAASMDLDLQLDTDIVQPGRFHAVGLWEV 146

Query: 143 LRRLPPAGILSAARVCKGWRETTKKIWRAAEVLRLRVPPKAPFGFVGSLLQKCSGLVTLS 202
           L+RLPP+ +L AARVCKGWRET++K+W+AAE LR+RVP +A  G++GSLLQKC  L+ LS
Sbjct: 147 LKRLPPSSLLMAARVCKGWRETSRKMWKAAEELRIRVPERAQIGYIGSLLQKCPRLIRLS 206

Query: 203 LRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFVADKRCLKSLKMEG 262
           L++E SD D+  LACIAFSCPNLE LEIT S +++NRI+G EL RFVA+KR L SLKMEG
Sbjct: 207 LKIE-SDFDATTLACIAFSCPNLEVLEITTSGAAVNRISGDELSRFVANKRGLTSLKMEG 266

Query: 263 CSSLGSFSLCSSSLSTLWLSDLCSLSKMAFNCPNLKEISLEFSRHENDRTDLVAMVDGMV 322
           CS+LG FSL SSSLSTLWLSDL SLSKM FNCPNL EISLEFSR E+D TDLV MVDG+ 
Sbjct: 267 CSNLGGFSLSSSSLSTLWLSDLHSLSKMIFNCPNLTEISLEFSRQEDDSTDLVTMVDGLG 326

Query: 323 RGCPRLQNVHISSFRLSHAVVLALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLEL 382
           R C RLQN+HI+S +LSH VVL+LTA   R LRMLSLVLG +ITDASVA+I+S Y NLEL
Sbjct: 327 RTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLSLVLGINITDASVAAISSGYKNLEL 386

Query: 383 LDLSGSSISDSGIGMICNVFPDTLSRFLLALCPNITSIASSSSGGIQFATAELPLLELMD 442
           LDLSGSSI+D+G+GMIC+V PDTLS+ L+ALCPNIT      S GIQFATA+LPLLELMD
Sbjct: 387 LDLSGSSITDTGLGMICDVLPDTLSKLLVALCPNIT------SSGIQFATAQLPLLELMD 446

Query: 443 CGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQKLIIKHNHLKKLSLWGCSGLDALYL 502
           CGMT+ DPNS + T       +  P   K     QK+ IKH  LKKLSLWGCS LDAL+L
Sbjct: 447 CGMTVSDPNSDNPTF------VENPSPHKTPGYNQKMFIKHKRLKKLSLWGCSSLDALFL 506

Query: 503 NCPQLDDLNLNSCKNLHPERLLLQCPSLRNVHASDCEELLVGAIRSQLKKAASPEENLLS 562
           NCP+L DLNLN C NLHPE L+LQCP L+ V+AS C+ LL GAIR Q+ +  S  EN + 
Sbjct: 507 NCPELMDLNLNLCSNLHPESLVLQCPKLQLVYASGCQGLLTGAIRKQVSENFSAGENHMP 566

Query: 563 CKRLADGSKRIRVPPLVSSLSSDNG---SKRRRVGSHHCNI 588
            KRLAD SKRI+  P +   + ++G    KRR++    C I
Sbjct: 567 RKRLADASKRIQALPSLYQETREDGIYAGKRRKLEKEMCTI 591

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BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot
Match: E2RKN7 (F-box/LRR-repeat protein 15 OS=Canis lupus familiaris OX=9615 GN=FBXL15 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 7.8e-05
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 273 SLSKMAFNCPNLKEISLEFSRHENDRTDLVAMVDGMVRGCPRLQNVHISSFR-LSHAVVL 332
           +L  +A  CP L+ +SL       D  D +A+  G+   CP L+ + +++ R L    ++
Sbjct: 131 ALGALAEGCPRLQRLSLAHC----DWVDGLAL-RGLADRCPALEELDLTACRQLKDEAIV 190

Query: 333 ALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLELLDLSGS-SISDSGIGMICNVFP 391
            L   +  GLR LSL + A++ DA+V  +A   P LE LDL+G   +   G+  +    P
Sbjct: 191 YLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELEHLDLTGCLRVGSDGVRTLAEYCP 245

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BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot
Match: Q9C5D2 (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-04
Identity = 98/428 (22.90%), Postives = 180/428 (42.06%), Query Frame = 0


Query: 118 SGCLPASCLWEILRRLPPAGILSA-ARVCKGWRETTKKIWRAAEVLRLRVPPKAPFGFVG 177
           + CLP   + EI RRL       A + VCK W    +    +   LR+     +P  F+ 
Sbjct: 8   NNCLPEELILEIFRRLESKPNRDACSLVCKRWLSLER---FSRTTLRIGA-SFSPDDFIS 67

Query: 178 SLLQKCSGLVTLSLRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFV 237
            L ++   + ++ +     +  S+ L  ++ S P  +    + S SS  R    +     
Sbjct: 68  LLSRRFLYITSIHV----DERISVSLPSLSPS-PKRKRGRDSSSPSSSKRKKLTDKTHSG 127

Query: 238 ADKRCLKSLKMEGCSSLGSFSLCSSSLSTLWLSDLCS--LSKMAFNCPNLKEISLEFSRH 297
           A+     SL   G ++L +      +LS +W  ++ S  L  +A  C +LK + L+   +
Sbjct: 128 AENVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQ-GCY 187

Query: 298 ENDRTDLVAMVDGMVRGCPRLQNVHISSFR-LSHAVVLALTAGQLRGLRMLSLVLGADIT 357
             D+      +  + + C +L+ +++     L+   V+ L  G  + L+ + +   A IT
Sbjct: 188 VGDQG-----LAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKIT 247

Query: 358 DASVASIASTYPNLELLDLSGSSISDSGIGMI---CNVFPDTLSRFLLALCPNITSIASS 417
           D S+ ++ S    LE+L L    I D G+  +   C+   +     L   C ++T +A +
Sbjct: 248 DLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKN-----LKLQCVSVTDVAFA 307

Query: 418 SSGGIQFATAELPLLELM---DCGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQKLI 477
           + G +  +   L L       D GM      S+    ++ D  LS   +  F        
Sbjct: 308 AVGELCTSLERLALYSFQHFTDKGMRAIGKGSK----KLKDLTLS---DCYFVSCKGLEA 367

Query: 478 IKH--NHLKKLSLWGC-----SGLDALYLNCPQLDDLNLNSCK---NLHPERLLLQCPSL 526
           I H    L+++ + GC      G++A+  +CP+L +L L  C+   N   + +   C SL
Sbjct: 368 IAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSL 408

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BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot
Match: A2RT62 (F-box/LRR-repeat protein 16 OS=Mus musculus OX=10090 GN=Fbxl16 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-04
Identity = 56/229 (24.45%), Postives = 100/229 (43.67%), Query Frame = 0


Query: 288 SLEFSRHENDRTDLVAMVDGMVRGCPRLQNVHISSFRLSHAVVLALTAGQLRGLRMLSLV 347
           SL  S   N   D +A +  ++   P L  + + ++ ++   +   TA Q      L L+
Sbjct: 246 SLSVSDCINVADDAIAAISQLL---PNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLL 305

Query: 348 LGADITDASVASIASTYPNLELLDLSG-SSISDSGIGMICNVFPDTLSRFLLALCPNITS 407
              +IT+  V ++  + PNL  L LSG S ++D G+ ++       L    L+ CP IT 
Sbjct: 306 SCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENL-RKLRSLDLSWCPRITD 365

Query: 408 IASSSSGGIQFATAELPLLE--LMDCGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQ 467
           +A      +++   +L  LE  ++D  + I D      ++      L      +      
Sbjct: 366 MA------LEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGL 425

Query: 468 KLIIKHNHLKKLSLWGC-----SGLDALYLNCPQLDDLNLNSCKNLHPE 509
           K ++   +L+ LSL GC     +GL  L +   +L++L L +C    PE
Sbjct: 426 KHLLAMRNLRLLSLAGCPLLTTTGLSGL-VQLQELEELELTNCPGATPE 463

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BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot
Match: Q8N461 (F-box/LRR-repeat protein 16 OS=Homo sapiens OX=9606 GN=FBXL16 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-04
Identity = 58/233 (24.89%), Postives = 101/233 (43.35%), Query Frame = 0


Query: 288 SLEFSRHENDRTDLVAMVDGMVRGCPRLQNVHISSFRLSHAVVLALTAGQLRGLRMLSLV 347
           SL  S   N   D +A +  ++   P L  + + ++ ++   +   TA Q      L L+
Sbjct: 246 SLSVSDCINVADDAIAAISQLL---PNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLL 305

Query: 348 LGADITDASVASIASTYPNLELLDLSG-SSISDSGIGMICNVFPDTLSRFLLALCPNITS 407
              +IT+  V ++  + PNL  L LSG S ++D G+ ++       L    L+ CP IT 
Sbjct: 306 SCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENL-RKLRSLDLSWCPRITD 365

Query: 408 IASSSSGGIQFATAELPLLE--LMDCGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQ 467
           +A      +++   +L  LE  ++D  + I D       S +      +    ++    Q
Sbjct: 366 MA------LEYVACDLHRLEELVLDRCVRITD----TGLSYLSTMSSLRSLYLRWCCQVQ 425

Query: 468 KLIIKH----NHLKKLSLWGC-----SGLDALYLNCPQLDDLNLNSCKNLHPE 509
              +KH      L+ LSL GC     +GL  L +   +L++L L +C    PE
Sbjct: 426 DFGLKHLLALGSLRLLSLAGCPLLTTTGLSGL-VQLQELEELELTNCPGATPE 463

[Close]

BLAST of CmaCh08G003060 vs. TAIR 10
Match: AT3G54650.1 (RNI-like superfamily protein )

HSP 1 Score: 613.6 bits (1581), Expect = 1.6e-175
Identity = 350/581 (60.24%), Postives = 412/581 (70.91%), Query Frame = 0


Query: 23  KKRGSYNCGRCGLPKKGHVCNLTS--STTNTATTSPPTTDSSNSARCS-------TIDPS 82
           K RGSYNCGRCG PKKGHVC LT+      T   S P +  S +A  S       T  PS
Sbjct: 27  KNRGSYNCGRCGQPKKGHVCLLTAPPDIPTTPIASEPVSCISAAASSSRSTVLSLTAAPS 86

Query: 83  SH---VHLRRALSFDDADDLRSGFHSDFDDIDEAEPVFDYP-DIDPDSSGCLPASCLWEI 142
           S     HLRRALSFDD D   S    D  D+D A    D   D D    G   A  LWE+
Sbjct: 87  SRQTFTHLRRALSFDDVDARNS---LDESDLDAASMDLDLQLDTDIVQPGRFHAVGLWEV 146

Query: 143 LRRLPPAGILSAARVCKGWRETTKKIWRAAEVLRLRVPPKAPFGFVGSLLQKCSGLVTLS 202
           L+RLPP+ +L AARVCKGWRET++K+W+AAE LR+RVP +A  G++GSLLQKC  L+ LS
Sbjct: 147 LKRLPPSSLLMAARVCKGWRETSRKMWKAAEELRIRVPERAQIGYIGSLLQKCPRLIRLS 206

Query: 203 LRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFVADKRCLKSLKMEG 262
           L++E SD D+  LACIAFSCPNLE LEIT S +++NRI+G EL RFVA+KR L SLKMEG
Sbjct: 207 LKIE-SDFDATTLACIAFSCPNLEVLEITTSGAAVNRISGDELSRFVANKRGLTSLKMEG 266

Query: 263 CSSLGSFSLCSSSLSTLWLSDLCSLSKMAFNCPNLKEISLEFSRHENDRTDLVAMVDGMV 322
           CS+LG FSL SSSLSTLWLSDL SLSKM FNCPNL EISLEFSR E+D TDLV MVDG+ 
Sbjct: 267 CSNLGGFSLSSSSLSTLWLSDLHSLSKMIFNCPNLTEISLEFSRQEDDSTDLVTMVDGLG 326

Query: 323 RGCPRLQNVHISSFRLSHAVVLALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLEL 382
           R C RLQN+HI+S +LSH VVL+LTA   R LRMLSLVLG +ITDASVA+I+S Y NLEL
Sbjct: 327 RTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLSLVLGINITDASVAAISSGYKNLEL 386

Query: 383 LDLSGSSISDSGIGMICNVFPDTLSRFLLALCPNITSIASSSSGGIQFATAELPLLELMD 442
           LDLSGSSI+D+G+GMIC+V PDTLS+ L+ALCPNIT      S GIQFATA+LPLLELMD
Sbjct: 387 LDLSGSSITDTGLGMICDVLPDTLSKLLVALCPNIT------SSGIQFATAQLPLLELMD 446

Query: 443 CGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQKLIIKHNHLKKLSLWGCSGLDALYL 502
           CGMT+ DPNS + T       +  P   K     QK+ IKH  LKKLSLWGCS LDAL+L
Sbjct: 447 CGMTVSDPNSDNPTF------VENPSPHKTPGYNQKMFIKHKRLKKLSLWGCSSLDALFL 506

Query: 503 NCPQLDDLNLNSCKNLHPERLLLQCPSLRNVHASDCEELLVGAIRSQLKKAASPEENLLS 562
           NCP+L DLNLN C NLHPE L+LQCP L+ V+AS C+ LL GAIR Q+ +  S  EN + 
Sbjct: 507 NCPELMDLNLNLCSNLHPESLVLQCPKLQLVYASGCQGLLTGAIRKQVSENFSAGENHMP 566

Query: 563 CKRLADGSKRIRVPPLVSSLSSDNG---SKRRRVGSHHCNI 588
            KRLAD SKRI+  P +   + ++G    KRR++    C I
Sbjct: 567 RKRLADASKRIQALPSLYQETREDGIYAGKRRKLEKEMCTI 591

[Close]

BLAST of CmaCh08G003060 vs. TAIR 10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 7.3e-06
Identity = 98/428 (22.90%), Postives = 180/428 (42.06%), Query Frame = 0


Query: 118 SGCLPASCLWEILRRLPPAGILSA-ARVCKGWRETTKKIWRAAEVLRLRVPPKAPFGFVG 177
           + CLP   + EI RRL       A + VCK W    +    +   LR+     +P  F+ 
Sbjct: 8   NNCLPEELILEIFRRLESKPNRDACSLVCKRWLSLER---FSRTTLRIGA-SFSPDDFIS 67

Query: 178 SLLQKCSGLVTLSLRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFV 237
            L ++   + ++ +     +  S+ L  ++ S P  +    + S SS  R    +     
Sbjct: 68  LLSRRFLYITSIHV----DERISVSLPSLSPS-PKRKRGRDSSSPSSSKRKKLTDKTHSG 127

Query: 238 ADKRCLKSLKMEGCSSLGSFSLCSSSLSTLWLSDLCS--LSKMAFNCPNLKEISLEFSRH 297
           A+     SL   G ++L +      +LS +W  ++ S  L  +A  C +LK + L+   +
Sbjct: 128 AENVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQ-GCY 187

Query: 298 ENDRTDLVAMVDGMVRGCPRLQNVHISSFR-LSHAVVLALTAGQLRGLRMLSLVLGADIT 357
             D+      +  + + C +L+ +++     L+   V+ L  G  + L+ + +   A IT
Sbjct: 188 VGDQG-----LAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKIT 247

Query: 358 DASVASIASTYPNLELLDLSGSSISDSGIGMI---CNVFPDTLSRFLLALCPNITSIASS 417
           D S+ ++ S    LE+L L    I D G+  +   C+   +     L   C ++T +A +
Sbjct: 248 DLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKN-----LKLQCVSVTDVAFA 307

Query: 418 SSGGIQFATAELPLLELM---DCGMTICDPNSRDSTSEIGDHELSKPPNSKFHLIYQKLI 477
           + G +  +   L L       D GM      S+    ++ D  LS   +  F        
Sbjct: 308 AVGELCTSLERLALYSFQHFTDKGMRAIGKGSK----KLKDLTLS---DCYFVSCKGLEA 367

Query: 478 IKH--NHLKKLSLWGC-----SGLDALYLNCPQLDDLNLNSCK---NLHPERLLLQCPSL 526
           I H    L+++ + GC      G++A+  +CP+L +L L  C+   N   + +   C SL
Sbjct: 368 IAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSL 408

[Close]

BLAST of CmaCh08G003060 vs. TAIR 10
Match: AT5G25350.1 (EIN3-binding F box protein 2 )

HSP 1 Score: 45.4 bits (106), Expect = 1.8e-04
Identity = 70/291 (24.05%), Postives = 116/291 (39.86%), Query Frame = 0


Query: 179 LQKCSGLVTLSLRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFVAD 238
           L+K   L  +S R     +  + L  +   CP+L+ + + K       ++G  L      
Sbjct: 324 LKKLKSLSVMSCR----GMTDVGLEAVGNGCPDLKHVSLNKCL----LVSGKGLVALAKS 383

Query: 239 KRCLKSLKMEGCSSLGSFSL------CSSSLSTLWLSDLCSLSKMAFN------------ 298
              L+SLK+E C  +  F L      C S L    L++   +S   FN            
Sbjct: 384 ALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGISD--FNSESSLPSPSCSS 443

Query: 299 --------CPNLKEISLEF------SRHENDRTDLVAMVDGMVRGCPRLQNVHISSFRLS 358
                   CP   + SL F         + +   L  + D  VR   +  NV +    LS
Sbjct: 444 LRSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLS 503

Query: 359 HAV------VLALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLELLDLSGSSISDS 418
             +      V A++    R L  L+L    +IT+AS+ ++A    ++  LD+S + +SD 
Sbjct: 504 ECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDH 563

Query: 419 GIGMICNVFPDTLSRFLLALCPNITSIASSSSGGIQFATAELPLLELMDCG 432
           GI  + +  P+ L+  +L++    +SI   S   IQ     L  L +  CG
Sbjct: 564 GIKALAS-SPNHLNLQVLSI-GGCSSITDKSKACIQKLGRTLLGLNIQRCG 602

[Close]

BLAST of CmaCh08G003060 vs. TAIR 10
Match: AT2G25490.1 (EIN3-binding F box protein 1 )

HSP 1 Score: 43.5 bits (101), Expect = 6.8e-04
Identity = 62/264 (23.48%), Postives = 109/264 (41.29%), Query Frame = 0


Query: 179 LQKCSGLVTLSLRLESSDLDSMMLACIAFSCPNLEALEITKSQSSINRITGGELGRFVAD 238
           LQK + L   + +     +  M L  +   CPN++   I+KS      ++   L  F   
Sbjct: 334 LQKLNSLTITACQ----GVTDMGLESVGKGCPNMKKAIISKSP----LLSDNGLVSFAKA 393

Query: 239 KRCLKSLKMEGCSSLGSFSLCSSSL------------STLWLSDLCSLSKMAFNCPNLKE 298
              L+SL++E C  +  F    S L            + L + DL +    + +C  L+ 
Sbjct: 394 SLSLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCSALRS 453

Query: 299 ISLEFSRHENDRTDLVAMVDGMVRGCPRLQNVHISSFR---------------------- 358
           +S+       D     A +  + + CP+L+++ +   +                      
Sbjct: 454 LSIRNCPGFGD-----ANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQSSLVKINFSG 513

Query: 359 ---LSHAVVLALTAGQLRGLRMLSLVLGADITDASVASIASTYPNLELLDLSGSSISDSG 406
              L+  V+ A+TA     L +L++   ++ITDAS+ SIA+    L  LD+S  +ISDSG
Sbjct: 514 CSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSG 573

The following BLAST results are available for this feature:

BLAST of CmaCh08G003060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W104	2.3e-174	60.24	F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana OX=3702 GN=FBL17 PE=1 SV=1	[more]
E2RKN7	7.8e-05	30.83	F-box/LRR-repeat protein 15 OS=Canis lupus familiaris OX=9615 GN=FBXL15 PE=3 SV=...	[more]
Q9C5D2	1.0e-04	22.90	F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1	[more]
A2RT62	1.0e-04	24.45	F-box/LRR-repeat protein 16 OS=Mus musculus OX=10090 GN=Fbxl16 PE=1 SV=1	[more]
Q8N461	1.3e-04	24.89	F-box/LRR-repeat protein 16 OS=Homo sapiens OX=9606 GN=FBXL16 PE=2 SV=2	[more]

BLAST of CmaCh08G003060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54650.1	1.6e-175	60.24	RNI-like superfamily protein	[more]
AT4G15475.1	7.3e-06	22.90	F-box/RNI-like superfamily protein	[more]
AT5G25350.1	1.8e-04	24.05	EIN3-binding F box protein 2	[more]
AT2G25490.1	6.8e-04	23.48	EIN3-binding F box protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 120..155 e-value: 4.7E-6 score: 26.3
None	No IPR available	GENE3D	1.20.1280.50		coord: 119..156 e-value: 2.2E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 10..589
None	No IPR available	PANTHER	PTHR13382:SF18	F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1	coord: 10..589
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 178..408
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 465..525
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 461..555 e-value: 2.0E-5 score: 25.7
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 174..421 e-value: 1.3E-23 score: 85.0
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 112..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G003060.1	CmaCh08G003060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding