CmaCh08G001870 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G001870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTrigger_N domain-containing protein
LocationCma_Chr08: 1055231 .. 1059051 (-)
RNA-Seq ExpressionCmaCh08G001870
SyntenyCmaCh08G001870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGGCGTCGTATTGCAACTTGGATAAGTCTTTGCTGGAAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACCGCAACCGCAACTGCAACGGTAGCCAACATCGCTTCAGAATTCCGGCGGCCAGTATTCACCAAAGTAAGTAATTCTATCCATATTCTCAGTAGCTTAACCAATGAATCGAATCTCGAAGCTCCACCGCATTTTTCCGCCTTCCTCCCAATATGTTTGGGATATTACCATTTTCAAATCATTTTTTGTGTTGCAGGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGATTTGTATGAACTTCGGAGGCGTTGAATTTGAAAATGTACAGGATAGGCTGTGTACAAGGTAAACATGTATTTTGATTTTTTTATTTGTTTATTGAGCGGTGTAGTGATGGATATTGCTTGTTCAGTTTCGATTTGGTGAATTGTACATAGAAACTGATGTATAGAAGTAGGAACGTTTCTTCATTTCCAGGTCCTCAGTTTCTTATAGTCTCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGACGGCCATAGCTAGTTCAGGTAATTCTGATTCTAGTCATGAACTTCAGTATGTTACTATTTAGCCTATGTATATTCAAATTTGTAATGGTTTAGACCTATTGTGAACTACGAGGACTAAATTATGTTCATTGACCACATCGTTACAAGTTTTAAAATACAGGAATCAAATTGTTCGTGGACCAAATTACTAACTTGATCGAATGTATTTTTTAACTTTATTTTTCTTCTTCGTTTCTTCCAGAATTGATAACCATTTGGTATTCAAAGTATAAGCTCATAAACATTACTTCCACCTATGAGGTTCTTTGTTTTGTTATCTGCCTTCTAAAAAGTGTGTTCCAAATTCAAGCCAAATTTGTTTTTGTTATTGGAATTGACTGGGAATTTAAATGTTTCTTTAAGAAAGATGGAAACCATAGTAAAGAATTTGTTAGAAAATAAGCATAAACTATGTAAACGAAAAGCTAGAAACAAAACCGTTATCGATTCGGGTCATAGTAATTTGGAAGCTATGACAAAAGTAGGACAGTTTTTACCAGTAAATCTTGTCTTGCATGCACTCAGAAGATATTATTTTCTTCTGTATCATGTTTCAAAAAAATTGTGTTGAGTATATTGCAAATCGTGTTTAAGAAACACAATGATGGATTTGGTAAAAGTTGTCTCTGTTTTGTTGATCTGTTTTGATGTCATAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGGTAACACTACCTATGTGAACTAGTTGTAGCATGCATAACATTTTTGGTTGTAGCATAGAGTTTTACCACTTTGATTTTCATCCTGAAGGAATTTACATCTAATCCTTTTATAGCATTTTAAAACACTTTCCGCTGACACTTTCAAGAGTAGATTTAATGCTGTTTGATGCATACTGATACAAATCTTATAAGATGATATGTATATTTCATATGGAAATTTGGTGTAAGCTTTTATCCTCTTAAGTCATACAAATTATACATATAGTTCCCCATATGAAATACACATCTTACCAAATGTAAGTGTATTTCATATTGCAAAATGGAGGCTAATCTATTACTTCAGACCTTGCATTCCAAAACTTGATAAAAGATGGTTTATTTTATTTATGAACAAGATGGTAAAACTTAGAGGGATAATTAGAGATTTCTCTTCTCCCCAACTGGCAACTACCATACTTAACTCATGAAAAGCTTACATCCTTAAGAGACTACCGTCTCGTTATCTATTCTCTCACTCTCCCAAACCTCACTTTGTTACAACTTGTGCCCACGGTAGGAAATCAAGATGTAAAGATTGGGTACATATCTTTGATAAATGTCTAATGAAATCTAATGAACAGCTAAGAGTGAACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAAGTTTTGACGAATTTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGTATTACTGTGATTTTCCTCCCCCCTTCACTGTGAATGTCGTTACAACCGTTCATTTATACTGCAACACAAGTCTTTTACATGTTCATCCATATAGACAAGCATGAGAATTGAGAAGTACCGTTTCTATAATTACGAATTCATATATGCAGCTGCTTTTACATCTCCTAAATTTTTATGTTTAGTAGCAGATGACTCGACTTTATATGGTTTCTAATGTTTTCGTGTTTTCATGCCCGTTGATGCTTGGCCAGGGAAAACTTCAAATGTGAGTTGCTTCTCTTGGCCTTTTCAACTTTCCCCTTTGGGTTTCCAAGTACTTTTAAGTTGTTATGTCTTTTTTTCTCAATATCGTTCTATTCTTATACATATTGTTCTATTCTTCCCCAAGGTTTCTATTTGTAAATAACGAATTCCTTCAGGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGTCACAAAGTTCGTCATACAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTGTATCCTCATTGCTTTGCTCCTTTTTTATGCCCACTGCCTGTGTGCTGATTTTAATTTGGGAGCTGTTTTTGAATTGGTTTTCCTAGATGCCTTTTAGATCTTAATTATATTGGGTATATTGAAATCACTATTCGTTAACTATTTACAAACTTATGATGATTGTGTCTGTATAGTTTCTATATATCTTTATATTTTCAAAAGTTTCAATAGTTTCAATTGTGATTTTACGTGATAGAGCATTACCATCGTTAACTAAAATGATGTGTAAGATCGCACATCAGCTGGAGAGGAGAACGAAATATTATTTATAAAAGTGTGGAAACCACTCCCTAACAGATCGTTTTAAAAACCTTGAGGGGAATCTCAAAAGGGAAAGTCCAAAAATGACAATATCTGTTAGCGGTAGGCTTGGGCTGTTACATGACATGTCTGCTATACATATATTTTGTTAATATTTTGTTAATTTGGCATGACGTAACAGACAAATGATAGAAAGAAGTCAAACAATTAGATAAAGGAGGACGCAGTTTATGAAATGAATTTGATACAGCTCGTTTTTCTTTTGTTTTGACTCCAACGCAGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGTGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACCTGAACTTGACTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGGTCCCCCTTTCCCAGTGAACATTTTCTCCACCTGTTCTTTCTTGGCCCTCTTTCAAAGTTTTGGAAATATTTTGTTGAAGGAATAAATGTTTGATTATCCATAGTGATGCATTGATCAGTATTAATGAGTTCTAGTTACTAAGTTACTTGTTTACTTGTTATTTTTATCTGTTTTTAGTTCAAACTACACCTAAACTAGAAATTTGAATTACAACTCTTAATGGAAGTTTCTAACGTTTTTGTTCATACTGAAACGAGCTATTCACAGATTGCAAGTTACACAGTTGGCGGGCGGTGGCGTCCAACGTGCCCATGTCGCTGAAACAGGCGACGACAACCACCGGTCGTAGTGCGTAACCCTTCAAATGAAAACAATATTAATGCATTATGTCAATTATTAATAATAATAATAAAAAAAAAACGTGCTTGATGGAGTGGTTGGTATTACCAGGTCGTATGGACAGA

mRNA sequence

AACGGCGTCGTATTGCAACTTGGATAAGTCTTTGCTGGAAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACCGCAACCGCAACTGCAACGGTAGCCAACATCGCTTCAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGATTTGTATGAACTTCGGAGGCGTTGAATTTGAAAATGTACAGGATAGGCTGTGTACAAGGTCCTCAGTTTCTTATAGTCTCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGACGGCCATAGCTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGAACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAAGTTTTGACGAATTTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGTCACAAAGTTCGTCATACAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGTGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACCTGAACTTGACTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGATTGCAAGTTACACAGTTGGCGGGCGGTGGCGTCCAACGTGCCCATGTCGCTGAAACAGGCGACGACAACCACCGGTCGTAGTGCGTAACCCTTCAAATGAAAACAATATTAATGCATTATGTCAATTATTAATAATAATAATAAAAAAAAAACGTGCTTGATGGAGTGGTTGGTATTACCAGGTCGTATGGACAGA

Coding sequence (CDS)

ATGGCGTCCGCAACCGCAACCGCAACTGCAACGGTAGCCAACATCGCTTCAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGATTTGTATGAACTTCGGAGGCGTTGAATTTGAAAATGTACAGGATAGGCTGTGTACAAGGTCCTCAGTTTCTTATAGTCTCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGACGGCCATAGCTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGAACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAAGTTTTGACGAATTTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGTCACAAAGTTCGTCATACAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGTGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACCTGAACTTGACTCTGCTTCAGAGGATGAAAATTGA

Protein sequence

MASATATATATVANIASEFRRPVFTKVPVNGRRRNALICMNFGGVEFENVQDRLCTRSSVSYSLLVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELELEPELDSASEDEN
Homology
[Close]
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match: Q118P4 (Trigger factor OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=tig PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 36/132 (27.27%), Postives = 76/132 (57.58%), Query Frame = 0 

Query: 100 KIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFL 159
           K+  E    ++I L + ++ + ++  ++Q++    RSA  +PGFRK K      VP++ L
Sbjct: 2   KVTQEKLPASQISLEIEISPEMSKNAYEQIIKKYIRSA-NIPGFRKGK------VPRNIL 61

Query: 160 LEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFN 219
           ++ LGK+ +    + +++N+ +    ++E+IK   +    T+ E+ +K  F PGKE  F+
Sbjct: 62  IQRLGKNYIKAMALDDLINNCLEKAREQESIKAIGQFELKTEFEELVKD-FEPGKEMAFS 121

Query: 220 AILELELEPELD 232
           A +++E E +++
Sbjct: 122 AKVDVEPEAKVE 125

[Close]
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match: Q8YQX9 (Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=tig PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = 0 

Query: 100 KIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFL 159
           K+  E    ++I L + +T + TQK ++QV+ NL+R+   +PGFRK K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 160 LEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFN 219
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQ-PRLRSSFDDLINSYEPGQPLTFT 121

Query: 220 AILELELEPEL 231
           A +++E E  L
Sbjct: 122 AAVDVEPEINL 124

[Close]
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match: B1XL18 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=tig PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 36/133 (27.07%), Postives = 70/133 (52.63%), Query Frame = 0 

Query: 100 KIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFL 159
           K++ E    +++ L + +  D TQK +D  +  LAR+   +PGFRK K      VPK  L
Sbjct: 2   KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTV-NLPGFRKGK------VPKQIL 61

Query: 160 LEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFN 219
           ++ LG +R+   V++++++ ++     +ENI+          + D+L   ++PG+   F 
Sbjct: 62  IQRLGPNRIKASVLEDLIDDSLKAAIAQENIEALGNF-QLKSSFDDLISAYKPGEASSFK 121

Query: 220 AILELELEPELDS 233
           A +++     L+S
Sbjct: 122 AAVDVPATVTLNS 126

[Close]
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match: Q3M725 (Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=tig PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = 0 

Query: 100 KIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFL 159
           K+  E    ++I L + +T + TQK ++QV+ NL+R+   +PGFRK K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 160 LEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFN 219
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQ-PRLRSSFDDLINSYEPGQPLTFT 121

Query: 220 AILELELEPEL 231
           A +++E E  L
Sbjct: 122 AAVDVEPEINL 124

[Close]
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match: B2IT89 (Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=tig PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.1e-05
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 0 

Query: 100 KIVVESEDENKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFL 159
           K+  E    ++I L + +T + T++ ++QV+ NLA +A  +PGFR+ K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITKQTYEQVIKNLASTA-NIPGFRRGK------VPRPIL 61

Query: 160 LEVLGKDRVTKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFN 219
           L+ LG  R+    ++E++   +    K+E I    +    +  ED +   + PGK     
Sbjct: 62  LQRLGTTRIKAAALEELIQDGIEQAVKQEAIPAIGQPQLRSSFEDLIN-NYEPGKPLTIL 121

Query: 220 AILELELEPEL 231
           A +++E E  L
Sbjct: 122 AAVDVEPEVNL 124

[Close]
BLAST of CmaCh08G001870 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 65/177 (36.72%), Postives = 109/177 (61.58%), Query Frame = 0 

Query: 49  NVQDRLCTRSSVSYSLLVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDE 108
           +VQ +LCTR++          +F++     A S +E +  D    IT       VE+E  
Sbjct: 37  SVQQKLCTRAT--------NRQFVA--VCAAPSDVETSSKDESVLIT------KVETETS 96

Query: 109 NKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRV 168
           N++++ V ++G++TQ VF+ V   +  +A P+PGFR+ KGGKT N+PK  LLE+LG  +V
Sbjct: 97  NEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKV 156

Query: 169 TKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELE 226
            K VI++++NS + DY K+E++KV  K +   Q+ ++L+  F PG+ F F+A ++L+
Sbjct: 157 YKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATIKLQ 196

[Close]
BLAST of CmaCh08G001870 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 65/177 (36.72%), Postives = 109/177 (61.58%), Query Frame = 0 

Query: 49  NVQDRLCTRSSVSYSLLVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDE 108
           +VQ +LCTR++          +F++     A S +E +  D    IT       VE+E  
Sbjct: 37  SVQQKLCTRAT--------NRQFVA--VCAAPSDVETSSKDESVLIT------KVETETS 96

Query: 109 NKIQLRVNLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRV 168
           N++++ V ++G++TQ VF+ V   +  +A P+PGFR+ KGGKT N+PK  LLE+LG  +V
Sbjct: 97  NEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKV 156

Query: 169 TKFVIQEILNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELE 226
            K VI++++NS + DY K+E++KV  K +   Q+ ++L+  F PG+ F F+A ++L+
Sbjct: 157 YKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATIKLQ 196

The following BLAST results are available for this feature:
BLAST of CmaCh08G001870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q118P43.1e-0827.27Trigger factor OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=tig PE=3... [more]
Q8YQX92.6e-0730.53Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690... [more]
B1XL182.6e-0727.07Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=320... [more]
Q3M7252.6e-0730.53Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292... [more]
B2IT894.1e-0528.24Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN... [more]
BLAST of CmaCh08G001870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30695.11.3e-2536.72FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ... [more]
AT2G30695.21.3e-2536.72FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 101..225
e-value: 2.7E-20
score: 74.7
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 100..231
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 100..231
e-value: 2.1E-12
score: 47.5
IPR005215Trigger factorPANTHERPTHR30560TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASEcoord: 60..229
NoneNo IPR availablePANTHERPTHR30560:SF4OS01G0894700 PROTEINcoord: 60..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G001870.1CmaCh08G001870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0015031 protein transport
biological_process GO:0043335 protein unfolding
biological_process GO:0006457 protein folding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0044183 protein folding chaperone
molecular_function GO:0043022 ribosome binding