CmaCh08G001810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	stress-associated endoplasmic reticulum protein 2-like
Location	Cma_Chr08: 1018586 .. 1021404 (+)
RNA-Seq Expression	CmaCh08G001810
Synteny	CmaCh08G001810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGAAGGATCAGACCATTAATCTATTGATTGGGATCAGAACGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCTCTCCGGCTACTCAATTTCCTGCCAAAATCATGGTAATTTTCTTCCCCGTTTCGTTTCGCTCTCAGATCTGTAAGTGCGGATGATTTTTGTTCTAGGGTTTTGATCACTGACTCGTGATATCGATCGTTTTTCCTTAACTGGATCGTTTAATCTTTCGCTAAGCAATTTTTTCTTGTGGATTGTGATCCTTTTTTCTGTTTTCTTCGTTGAGAATTCGGTCCAATGATCTGTTTTGCCATTATAGGTTTTTTTTTTTTGTTTGACCTTTGGCTAATTGGTTTTTATTGCATCTCATTCCGAAATTGAGGGATTAAATGTTCGTATTAGTGGTCTTTTGACAATGTAGATCATGAGGAATTAGTAATTTGAAACAAGTGATAGCCTTTGATTGGGAAATTTTTAAAGGGATTTTGTAGTCAGTATTGGTCTGAACTCTTCGTGAAACCTAATTGAGAATATTTATAAGAATAGAGCAAAAACAGACCGGAGAAAATTGGAGGGGACACTTGTGATAGTGAAGTAAAATTTTGGACGTTCAAATCGTTAATCTTATGTCCTTATTCTAGCTTATGTTTTGTGAAAATTAAGTCTTAGCAGAAGAATAATTGGAAACAAGTATTCCCTCTTGGGTGTTAATCTAAGTTGATAGTTGTTTTCTCAAGTCTCAATTTTGTAATTTAGACCATCTTATCCTAAGATTTTTGGTCAACATATGGTTAGGTTAGGTTATAGTTTTTAATGGGGGGAAATAATTGAGCTAACAAAATGATTTCATTTTGTTTTGAATTGTTAGTGCTGCTGAAATTCCCTGTATCCTAAATTTTTATATTTTGATCTGCCTTTTTGAACAATACTTGGTAAATGTTGCCTTCGGCTTTTGTAGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATGTAAGACTAATCCTTTGTTGTGTTTATATCATATAAGTTTTTGCTTCATCTGATATATAGTTTGTAGCTTAAGTTGTGGCTACCTTCATATAAACCAAGTATACGAGTTCCTAGTTCTGGAGGCAAGGATTAAAATGGATAAAGTCACAAATATTTCTGTGATTAAAAATTTATATATACATCTTGATATTACTATTTAAATATGTATAATCTTTTATGCGTATTTATAAAAGATATTAGAGATATTGATTAATCTTCAATATCAATGTTGAACCCTTTGATTTACGGATTTATGGGTATTTTCATCCTTGGTTCGAGGTATAGGGTGGAGTCAAGAACAAAGAAGGGAATTAACCTTAGTTTGTCTTAGATTCAAAATAGTATCTTAAAGAAAGATGTTCAAGTTTTCATCTAACTTGGACACTTTTTATGTTTTTTTCCACCTAGTCGAGCTATCTGAGTTTGATGGTGCATCTGGTAAGCTCTTTTAGTATTCATTTTCAGAGTCGTCAATTCTCCATTCCTTCATTCACATTCGTCTCCTTCCCTTTTTCCAGCTCAGTATTCTGAGCTCATAGCTCTAATTTTTTACCAGTCTTTCCCTCACACGTTAGAGACAGTCCCGTAAGCCTTATTCCATCCTAGCTCTCATAACATTTGTCTTGTTTTCGTTCTCTGTTGCATATCTGGATCATGCTTCTTGTAAAATTTTGTCCGGGTAGAGTTTCCTGGCCTTGGGATGTGATTTTGCTTCCATGCTACCGAAACATTTTTGACTGAATGAGAGCAAAATTGTCCGTGGTGGATATGTCAATTTGTCACTCCTAATATAGGAGGAAATAGGTTCAAGCTACCCCGGTTATCTTCCTAAACTTCAAATAGTTTACTAGGCAACCCAATGTAATAAGGTTGGCGGTAGTGAAATTAATCTAGATGATTGCAAGAGGACTCAACCAAGAAAAACCGAACAAGTATGCTACCGTTTAATTCTTCGACTATACCAGTTTAGTCTTATGTCCTTCACATGTTAGATTATGTCAACTCAAAAGACGGAATTTATTCACATTGTCTTGCAATATGCGGATGAGTTATCGAGGGAGGTCCTATGGTTTTATTACATTTACCTCACCATCCTAGGAACAACCTTCATTACCTGTCTTACAGGGTTGTGACATCTTTTTGATCTTGATTGCAAAACAACAAGCAAACTTGTCGTGTTCCAAGGATGATGTATTAATCTTGAAAATCTATGTTGAACCCACCTTAGCATATGTAGTGACGAATATTTTCATCCTTGCCGTGTTATCCCCATTTTGTATTCAAAGGGTATTATGAATGTTACTAATCTTTGTTTACTCAACAGCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGATGCGATGCTCTGATTTTGAGAGAATGGCGTTTAACTGCTCGACCCCCTTCCTCCCTTTCGTAGACGACACAGAAGGAAAGGGAATTTTTTTTTGAAAAAAAAGGGAATGATTCCACAGTTCGTACTTCTTGTGGATTTCAAGAACTTTGATAATAGAATTGTTGGTCCTTTTCCTGCTTTGACATCATATTATTGACAATTGGTTTGGTTAAACTAATTTATTTCTTCCTTAAATGAAGTTATTTTCTATTGGGTTTTATA

mRNA sequence

ACCGAAGGATCAGACCATTAATCTATTGATTGGGATCAGAACGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCTCTCCGGCTACTCAATTTCCTGCCAAAATCATGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGATGCGATGCTCTGATTTTGAGAGAATGGCGTTTAACTGCTCGACCCCCTTCCTCCCTTTCGTAGACGACACAGAAGGAAAGGGAATTTTTTTTTGAAAAAAAAGGGAATGATTCCACAGTTCGTACTTCTTGTGGATTTCAAGAACTTTGATAATAGAATTGTTGGTCCTTTTCCTGCTTTGACATCATATTATTGACAATTGGTTTGGTTAAACTAATTTATTTCTTCCTTAAATGAAGTTATTTTCTATTGGGTTTTATA

Coding sequence (CDS)

ATGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGA

Protein sequence

MTTSRRLADRKVGKFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGGGMA

Homology

[Close]

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 14 KFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGG 66
          K  +NIT+RG V +T   + + YPVGP LL  F+FVV GS++FQII++   G
Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 14 KFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGG 66
          K  +NIT+RG V +T   + + YPVGP LL  F+FVV GS++FQII++   G
Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 14 KFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGG 66
          K  +NIT+RG V +T   + + YPVGP LL  F+FVV GS++FQII++   G
Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot
Match: Q5REZ1 (Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 14 KFDRNITKRGAVPETTVK-KGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGG 66
          K  +NIT+RG V +T+    G+   VGP LL  FIFVV GS++FQII++   G
Sbjct: 13 KHSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65

[Close]

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot
Match: Q3ZBR1 (Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.5e-04
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 14 KFDRNITKRGAVPETTVKKGKD-YPVGPLLLGFFIFVVIGSSLFQIIRTATGG 66
          K  +NIT+RG V +T+    ++   VGP LL  FIFVV GS++FQII++   G
Sbjct: 13 KHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65

[Close]

BLAST of CmaCh08G001810 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 120.2 bits (300), Expect = 6.6e-28
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVGKFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60
          MTTS+RLADRK+ KFD+NI KRG VPETT KKGKDYPVGP+LLGFF+FVVIGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of CmaCh08G001810 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 120.2 bits (300), Expect = 6.6e-28
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVGKFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60
          MTTS+RLADRK+ KFD+NI KRG VPETT KKGKDYPVGP+LLGFF+FVVIGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

The following BLAST results are available for this feature:

BLAST of CmaCh08G001810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T073	1.1e-06	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
Q8N6R1	1.1e-06	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
Q6TAW2	1.1e-06	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]
Q5REZ1	1.7e-04	49.06	Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SER...	[more]
Q3ZBR1	6.5e-04	47.17	Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1...	[more]

BLAST of CmaCh08G001810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27350.1	6.6e-28	85.29	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	6.6e-28	85.29	Ribosome associated membrane protein RAMP4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 5..61 e-value: 1.2E-24 score: 86.0
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 1..68
None	No IPR available	PANTHER	PTHR15601:SF26	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001810.1	CmaCh08G001810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane