CmaCh08G001300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin-like domain-containing protein
Location	Cma_Chr08: 671360 .. 674490 (+)
RNA-Seq Expression	CmaCh08G001300
Synteny	CmaCh08G001300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGCTAAAAATTCCAGTTTCATAGTTTTTGCGTCTCTGGGAGTTCTTCGAATTCTCTCTTGAAACCAAAATTCGAAGCTCCACTACAATGGAGGCGGCGGCTACCGACATACCCAGAAGCGGAAGTGGTCGGATTTTCAATCTCTTCGTCAGGCTGTTAGATGGGAAAACCCTAGCTCTGAAATTGACATCCCCTTCTGTACACGGCCATGCCATCAAGCACCGTCTCTTTGAGACCACTGGAATTCCCCCAAATCACCAGCGTCTTGTCACTGGTGTCCGCCAGATCGAGGACGATTCGGTTGTTTCATGCTTCGATGAGTCTTCGGGTAAATTTCTTACTGTTCATCTTCTGCTTAGGCTGCTTGGAGGTAAGGGAGGGTTTGGATCGTTGCTTCGTGGGGCGGCCACGAAAGCGGGGCAGAAGAAGACCAATAATTTCGATGCTTGTAGGGATATGAGTGGGAGAAGGTTGAGGCATGTGAATGCTGAGAAGCGATTGGAGGAGTGGAAGGCGGAGGAGGAGGAGAGGAGATTGGAGAAGGTGGCTGAGGAGTTTCTGAAGAAGAAATCCAAGGTTGGGAAGAGGGGAGTTGGGGATTCTGCGACTCAGAAGTATGTAGAGAGGTATCGGGAGGAATCTGCGCGTTGTGTGGCTGAGGTGGAGAAATCCGTGAGAGATGCGGTGATGAAGGGTGGGAAGGGAAAAAGGAAGGGTCGTTCGATGCCGAATGGTGCAGATGCTAAAAAGTTGAAGATCTGGTCAGTATCTTGGTTTTTGCTTTTCTTTTATCCCTTAGATTATGTTCTAGTTTGCTAATTGTTTTGCCTTCAAAGTGCATCTTTTATAATTATTTTGGGAACCAATGATTTCGTAGATAGTATAGTTGTGAAGTTGCATTAGAGGGGAGGAGAGAAGCCACAAATCAAAGAAGACTACCCAAAAAAAAGCCCTGCAATTGGTATAAAGATCAGATGAACTATGAACTATAAACTATTAAACTAGGATCTTAATTTGTACCGAGATTGGCCAGCAAAAATTGTATTGTCTAGAAAGATATCTATGACATTTTCTAAATAGTTGAAGAATCTATGCTTCTTTTCCTTTATGAATAAGTGACTGAACAATTCAGTATCTGAAAACCCTTCGGTGCTCTTTGGGAAGACGTATGATTATTAAATGTTGGGTGGAGGATCTTCCAAAATCTAGATGCAAAGGGCATCTGAGGAACACATGCCGTCTCCTCAAAATCTTTCTTGCAATGAGTTTTTTGGTGGAAAGGAAGTAGTCTGGGATATAAAGAGTGAAGTGGTGCATCCTGAATTCACCAATCAGGCTGAAATCTGGTGGAGCTTTATTAATCTTCCTTTTATACCGACGAAACTATCTTTGTCAACTCTACTTCATTTTTGCCTTTTTTCCCTCTTGGGTTTTCGTTTTTTTCTTTCTGTTTTTTATTAGAGTGACTTCTTCAAATAATGAATCTATGCTATTTGATAGTGAGCATTTCATTTGTTATTGCGATCCACTTCTGTTCGAGAAAAGGAAAGAAACCCCACCTTAACGTTTGGATCAGTTCCAAAACTGGCATCAAAAGCAACATTAACATCATTTTCTTCTATTAGTCAACTATTGATGAATTATTTAGAACCTGAGCATTTTCTTGTTTGCTTGATGGTGATTAATTTCTTTTATTTTCTTTTTCCAGGATGGGCAAGAGGAAAATGGGTGAAAGTGACAGCGACGATTTGGATTCAGATGACTCTGATAGTGAAGAGGAAAACGAGAAATCAGTCATCTTGAATGATGGTTGTCAATCTGATTTAAATAAGGATGCCGAAGGGAGTTCAGACTCTGTTAACTTTGGTAAACATGGGTATGGTTCTGGGGAAGCCTCCAGTGAAAGTGGTTCTGAGGAAGAAAAGAACTTGGCAGTGCAGGAGACCATGGAATTAGTCGGAAGCTCCAGTGAAAAAGCTCTTTGTTCTGAACAGTTTGATGAGGTTGAGATTAACGATCAGACTACTCAGGGTGCAGTGGTACGTTGCTCAGAGGCTGTGGCTGTTGCTGTTTCTGCCGATCAAGAAGATGAGGTCGTAGAACAGGGTGTTCATGGGGTTGACATCACAAACATAGAAGATGTAGCTGCTAATCCTCAAGATATGTCAGTTCTGAACAATGGTGAAATGGTTGAAGATTTGTCGAGCCTTCCTGAACCAAATGGCTCGCCAGTGTCTAAGTTGAGTGATCATGAGGAAACAAGTGCAAGTAAAAGCAATTCAGATGCACCACTGAATTTTGAAGATTTTAGTTCTGCTGCTGACATGGAGGTATGATCCAGAAATCGAATTATCATTTTCTTATGCACCTTTTTCATTTATTTTTTACGTCTGCTAGGTTGCATCGCATTGATAAATAGTTTCCTAATATATTTGTCTATTACATGACAAGACCTTCACACATGGGTTAAATTCAGAAAATTTCATTAGGTGGACTAAATTTTATGTTCTAACATTATATGTTTGAAATCCTCCCATTCCAAAACTTGGAGGGCTCCATAATGTGCAACACGAACTAACCATCATGTTTGTTCGTGTTACATGTTATTGCTTTCGGAATTGAAAGTGAATGAAACTCAGATTTTTTTTTAGCATAGTATGTTCATATTATCTCCCCTTGATACACAGGTTCTTGGATTGGAAAGGCTGAAGTCGGAACTGCAAGCAAGAGGCTTGAAATGTGGGGGTACTTTGCAAGAGAGGGCAGCCAGGCTTTTCCTGCTCAAGTCTACGCCTTTGGACAAGCTTCCAAAGAAGCTTCATGCCAAAAAGTGACTGTAAAATTTGACTTGATTTCTCTCCATACTTGTGTAATGATATTAGGATGAACTCAATCAGTGGTCCAAGTAGAGTCAGTTTCTTTTAGTACGTACAACAAATATGATATTATGAGGTATAGGGAAGGTTTGAACTTCCGAGTACAAGTTGGTTGTGTTGCGTTGCATTTGTACACTTCTGAATGTTATAATAACTAAAACTATGTTTTTGTTCTTTGACCAAATAGGTTTTTAGTGTTGATTTTGTAACTTGGATAATAGGGTCATAACTTCTAGTTTATAGTTTATGATTA

mRNA sequence

TTGGGCTAAAAATTCCAGTTTCATAGTTTTTGCGTCTCTGGGAGTTCTTCGAATTCTCTCTTGAAACCAAAATTCGAAGCTCCACTACAATGGAGGCGGCGGCTACCGACATACCCAGAAGCGGAAGTGGTCGGATTTTCAATCTCTTCGTCAGGCTGTTAGATGGGAAAACCCTAGCTCTGAAATTGACATCCCCTTCTGTACACGGCCATGCCATCAAGCACCGTCTCTTTGAGACCACTGGAATTCCCCCAAATCACCAGCGTCTTGTCACTGGTGTCCGCCAGATCGAGGACGATTCGGTTGTTTCATGCTTCGATGAGTCTTCGGGTAAATTTCTTACTGTTCATCTTCTGCTTAGGCTGCTTGGAGGTAAGGGAGGGTTTGGATCGTTGCTTCGTGGGGCGGCCACGAAAGCGGGGCAGAAGAAGACCAATAATTTCGATGCTTGTAGGGATATGAGTGGGAGAAGGTTGAGGCATGTGAATGCTGAGAAGCGATTGGAGGAGTGGAAGGCGGAGGAGGAGGAGAGGAGATTGGAGAAGGTGGCTGAGGAGTTTCTGAAGAAGAAATCCAAGGTTGGGAAGAGGGGAGTTGGGGATTCTGCGACTCAGAAGTATGTAGAGAGGTATCGGGAGGAATCTGCGCGTTGTGTGGCTGAGGTGGAGAAATCCGTGAGAGATGCGGTGATGAAGGGTGGGAAGGGAAAAAGGAAGGGTCGTTCGATGCCGAATGGTGCAGATGCTAAAAAGTTGAAGATCTGGATGGGCAAGAGGAAAATGGGTGAAAGTGACAGCGACGATTTGGATTCAGATGACTCTGATAGTGAAGAGGAAAACGAGAAATCAGTCATCTTGAATGATGGTTGTCAATCTGATTTAAATAAGGATGCCGAAGGGAGTTCAGACTCTGTTAACTTTGGTAAACATGGGTATGGTTCTGGGGAAGCCTCCAGTGAAAGTGGTTCTGAGGAAGAAAAGAACTTGGCAGTGCAGGAGACCATGGAATTAGTCGGAAGCTCCAGTGAAAAAGCTCTTTGTTCTGAACAGTTTGATGAGGTTGAGATTAACGATCAGACTACTCAGGGTGCAGTGGTACGTTGCTCAGAGGCTGTGGCTGTTGCTGTTTCTGCCGATCAAGAAGATGAGGTCGTAGAACAGGGTGTTCATGGGGTTGACATCACAAACATAGAAGATGTAGCTGCTAATCCTCAAGATATGTCAGTTCTGAACAATGGTGAAATGGTTGAAGATTTGTCGAGCCTTCCTGAACCAAATGGCTCGCCAGTGTCTAAGTTGAGTGATCATGAGGAAACAAGTGCAAGTAAAAGCAATTCAGATGCACCACTGAATTTTGAAGATTTTAGTTCTGCTGCTGACATGGAGGTTCTTGGATTGGAAAGGCTGAAGTCGGAACTGCAAGCAAGAGGCTTGAAATGTGGGGGTACTTTGCAAGAGAGGGCAGCCAGGCTTTTCCTGCTCAAGTCTACGCCTTTGGACAAGCTTCCAAAGAAGCTTCATGCCAAAAAGTGACTGTAAAATTTGACTTGATTTCTCTCCATACTTGTGTAATGATATTAGGATGAACTCAATCAGTGGTCCAAGTAGAGTCAGTTTCTTTTAGTACGTACAACAAATATGATATTATGAGGTATAGGGAAGGTTTGAACTTCCGAGTACAAGTTGGTTGTGTTGCGTTGCATTTGTACACTTCTGAATGTTATAATAACTAAAACTATGTTTTTGTTCTTTGACCAAATAGGTTTTTAGTGTTGATTTTGTAACTTGGATAATAGGGTCATAACTTCTAGTTTATAGTTTATGATTA

Coding sequence (CDS)

ATGGAGGCGGCGGCTACCGACATACCCAGAAGCGGAAGTGGTCGGATTTTCAATCTCTTCGTCAGGCTGTTAGATGGGAAAACCCTAGCTCTGAAATTGACATCCCCTTCTGTACACGGCCATGCCATCAAGCACCGTCTCTTTGAGACCACTGGAATTCCCCCAAATCACCAGCGTCTTGTCACTGGTGTCCGCCAGATCGAGGACGATTCGGTTGTTTCATGCTTCGATGAGTCTTCGGGTAAATTTCTTACTGTTCATCTTCTGCTTAGGCTGCTTGGAGGTAAGGGAGGGTTTGGATCGTTGCTTCGTGGGGCGGCCACGAAAGCGGGGCAGAAGAAGACCAATAATTTCGATGCTTGTAGGGATATGAGTGGGAGAAGGTTGAGGCATGTGAATGCTGAGAAGCGATTGGAGGAGTGGAAGGCGGAGGAGGAGGAGAGGAGATTGGAGAAGGTGGCTGAGGAGTTTCTGAAGAAGAAATCCAAGGTTGGGAAGAGGGGAGTTGGGGATTCTGCGACTCAGAAGTATGTAGAGAGGTATCGGGAGGAATCTGCGCGTTGTGTGGCTGAGGTGGAGAAATCCGTGAGAGATGCGGTGATGAAGGGTGGGAAGGGAAAAAGGAAGGGTCGTTCGATGCCGAATGGTGCAGATGCTAAAAAGTTGAAGATCTGGATGGGCAAGAGGAAAATGGGTGAAAGTGACAGCGACGATTTGGATTCAGATGACTCTGATAGTGAAGAGGAAAACGAGAAATCAGTCATCTTGAATGATGGTTGTCAATCTGATTTAAATAAGGATGCCGAAGGGAGTTCAGACTCTGTTAACTTTGGTAAACATGGGTATGGTTCTGGGGAAGCCTCCAGTGAAAGTGGTTCTGAGGAAGAAAAGAACTTGGCAGTGCAGGAGACCATGGAATTAGTCGGAAGCTCCAGTGAAAAAGCTCTTTGTTCTGAACAGTTTGATGAGGTTGAGATTAACGATCAGACTACTCAGGGTGCAGTGGTACGTTGCTCAGAGGCTGTGGCTGTTGCTGTTTCTGCCGATCAAGAAGATGAGGTCGTAGAACAGGGTGTTCATGGGGTTGACATCACAAACATAGAAGATGTAGCTGCTAATCCTCAAGATATGTCAGTTCTGAACAATGGTGAAATGGTTGAAGATTTGTCGAGCCTTCCTGAACCAAATGGCTCGCCAGTGTCTAAGTTGAGTGATCATGAGGAAACAAGTGCAAGTAAAAGCAATTCAGATGCACCACTGAATTTTGAAGATTTTAGTTCTGCTGCTGACATGGAGGTTCTTGGATTGGAAAGGCTGAAGTCGGAACTGCAAGCAAGAGGCTTGAAATGTGGGGGTACTTTGCAAGAGAGGGCAGCCAGGCTTTTCCTGCTCAAGTCTACGCCTTTGGACAAGCTTCCAAAGAAGCTTCATGCCAAAAAGTGA

Protein sequence

MEAAATDIPRSGSGRIFNLFVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSVVSCFDESSGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEVEKSVRDAVMKGGKGKRKGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEKSVILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNLAVQETMELVGSSSEKALCSEQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDVAANPQDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFEDFSSAADMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAKK

Homology

[Close]

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot
Match: Q07G43 (Replication stress response regulator SDE2 OS=Xenopus tropicalis OX=8364 GN=sde2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-23
Identity = 135/423 (31.91%), Postives = 196/423 (46.34%), Query Frame = 0


Query: 85  TVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEW--- 144
           T  ++ RL GGKGGFGS+LR  A  A  +KT N +ACRD+SGRRLR VN EK + EW   
Sbjct: 61  TYSIVPRLCGGKGGFGSMLR--ALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWIKK 120

Query: 145 ----KAEEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYV----ERYREESARCVAEVE 204
               +AE+E+RRLE+     L++K    K    D    K      ER  E   + +    
Sbjct: 121 QADREAEKEQRRLER-----LQRKLAEPKHYFTDPEYHKQCHDMSERLEEAVIKGLQASS 180

Query: 205 KSVRDAVMKGGKGKRKGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEE----- 264
            S+  A     + ++K      G   KK   W G   +  S S D  + DSD +E     
Sbjct: 181 SSMASAESDDTRKRKKDMYSSKGTPGKKKCFWTGLEGLETSSSSD-SASDSDLDESPCSS 240

Query: 265 ----------ENEKSVILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKN 324
                     EN K  + +   QS   +  +GSSD  +    G+ S + S +   E + +
Sbjct: 241 SSSSSDSKYYENIKERLQSPESQSSPEELGQGSSDGSHQMLEGHSSSDRSHQM-LEGQAS 300

Query: 325 LAVQETMELVGSSSEKALCSEQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVV--E 384
            +  + M    SSS  A         E+  Q +Q   V   + +    S+D+  +     
Sbjct: 301 CSGSDQMLEGPSSSAGAQWQSSSKGTEL-VQESQSIPVESEQNMESQNSSDESKQTAFNN 360

Query: 385 QGVHGVDITNIEDVAANPQDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNS 444
            G++ V+  N+    +  QD    N+G         P     P+SK    + ++A  S  
Sbjct: 361 SGIN-VECENVTSPGSTGQDGQTPNDGVR-------PASPSIPISKQELQQPSNAETS-- 420

Query: 445 DAPLNFEDFSSAADMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKL 480
             P++   F +AA++E LGLE+LK EL A  LKCGGTLQERAARLF ++  P D++   L
Sbjct: 421 --PIDLLAFKTAAELEALGLEKLKLELGALALKCGGTLQERAARLFSVRGLPRDQIDPSL 461

[Close]

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot
Match: Q7T293 (Replication stress response regulator SDE2 OS=Danio rerio OX=7955 GN=sde2 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-22
Identity = 130/411 (31.63%), Postives = 188/411 (45.74%), Query Frame = 0


Query: 91  RLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEW-------KA 150
           RL GGKGGFGS+LR  A  A  +KT N +ACRD+SGRRLR VN EK + EW       +A
Sbjct: 67  RLCGGKGGFGSMLR--ALGAQIEKTTNREACRDLSGRRLRDVNHEKEMAEWLKKQADREA 126

Query: 151 EEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEVEKSVRDAVMKG 210
           E+E+RRLE++     ++K    K    D+  ++      E     V +  ++    +++ 
Sbjct: 127 EKEQRRLERI-----QRKLAEPKHYFTDTNYEQQCHDLSERLEDSVLKGMQASSSGLVQA 186

Query: 211 GKGKRKGRSMPNGA--DAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEKSVILNDGCQ 270
            +G    R+ P  +   AKK   W G   + E  S    SDDSDSE     S      C 
Sbjct: 187 DEGPSLKRANPTDSKKKAKKKCYWTGMAGLEEMASSSEGSDDSDSEVSPSTS---GASCS 246

Query: 271 SDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNLAVQE-TMELVGSSSEKALCSEQ 330
           S   K    S+   +  +    S  A  +   EE +    +E T E+  SSS  A  +E+
Sbjct: 247 SGFPKPVV-SAHKADPQEQPSSSSPAQRKHNQEELQKRDKEECTSEISSSSSSPAANNEK 306

Query: 331 FDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDVAANPQDMSVL 390
            ++ E N+      +   S + A   +   + E+  +      I++     A   +  V 
Sbjct: 307 LNQEETNE------ISSSSSSPAPKPTEVNQQEMETEMECTAQISSSSSSPAEHSEEEVQ 366

Query: 391 NNGEMVEDLSSLPEPNGSPVSKLSDH------------EETSASKSNSDAPLNFEDFSSA 450
              E VE ++   +     V K ++             EE S   S  + PL+    S  
Sbjct: 367 QTAERVEKMAEEVQKTAEEVQKKTEESTAEISPSSSIPEEKSQVLSQVEDPLDLLSVSGP 426

Query: 451 ADMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAK 480
             +E LGLERLK EL  RG+KCGGTLQERAARLF +K    D++   L AK
Sbjct: 427 EQLEALGLERLKKELMERGMKCGGTLQERAARLFSVKGLTPDQIDPSLLAK 460

[Close]

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot
Match: Q6NRI5 (Replication stress response regulator SDE2 OS=Xenopus laevis OX=8355 GN=sde2 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-19
Identity = 130/415 (31.33%), Postives = 181/415 (43.61%), Query Frame = 0


Query: 91  RLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEW-------KA 150
           RL GGKGGFGS+LR  A  A  +KT N +ACRD+SGRRLR VN EK + EW       +A
Sbjct: 67  RLCGGKGGFGSMLR--ALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWTKKQADREA 126

Query: 151 EEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYV----ERYREESARCVAEVEKSVRDA 210
           E+E+RRLE+     L++K    K    D    K      ER  E   + +      V  A
Sbjct: 127 EKEQRRLER-----LQRKLAEPKHYFTDPEYHKQCHDMSERLEEAVIKGLQASSSDVVSA 186

Query: 211 VMKGGKGKRKGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEKSVILNDG 270
                + ++K      G  +KK   W G   +  S S D  S DSD +E           
Sbjct: 187 ESDDTRKRKKDMYASKGTSSKKKCFWTGLEGLEASSSSD-SSSDSDLDE---------SP 246

Query: 271 CQSDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNLAVQETM---ELVGSSSEKAL 330
           C S         S    + K   GS E+SS S   EE + A    M   +  GS S+  L
Sbjct: 247 CSS------SSGSKHHEYIKERLGSPESSSSSDGLEEASSAGSHQMLKGQTSGSESDNIL 306

Query: 331 --CSEQFDEVEIND-QTTQGAVVRCSEAVAVAVSADQEDEV--VEQG-------VHGVDI 390
              S     + +   Q++        E       ++Q  E   +  G       V   + 
Sbjct: 307 EGPSSSAGSLHVPQLQSSSKGTEHIQEPQTCPAESEQNTETPNISDGSEENPTTVTNSEC 366

Query: 391 TNIEDVAANPQDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFED 450
            ++   A   Q+  +L++G      + L      P S+L     T  S       ++   
Sbjct: 367 KSVTSAANTGQNEQILDDGHKFASPTLL-----EPKSELQQSSNTEPSS------IDLVA 426

Query: 451 FSSAADMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAK 480
           + + A++E LGLE+LK EL A GLKCGGTLQERAARLF ++    D++   L AK
Sbjct: 427 YKTVAELEALGLEKLKLELVALGLKCGGTLQERAARLFSVRGLARDQIDPSLFAK 447

[Close]

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot
Match: Q6IQ49 (Replication stress response regulator SDE2 OS=Homo sapiens OX=9606 GN=SDE2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-17
Identity = 120/409 (29.34%), Postives = 191/409 (46.70%), Query Frame = 0


Query: 91  RLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEW-------KA 150
           RL GGKGGFGS+LR  A  A  +KT N +ACRD+SGRRLR VN EK + EW       +A
Sbjct: 73  RLCGGKGGFGSMLR--ALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAEREA 132

Query: 151 EEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEVEKSVRDA---V 210
           E+E++RLE++  + ++ K            +  Y ++  E + R    V K ++ A   +
Sbjct: 133 EKEQKRLERLQRKLVEPKHCF--------TSPDYQQQCHEMAERLEDSVLKGMQAASSKM 192

Query: 211 MKGGKGKRKGRSMP------NGADAKKLK-IWMGKRKMGESDSDDLDSDDSDSEEENEKS 270
           +     + + R  P       GA A K +  W+G   +  ++  + +S D DSEE    S
Sbjct: 193 VSAEISENRKRQWPTKSQTDRGASAGKRRCFWLGMEGLETAEGSNSESSDDDSEEAPSTS 252

Query: 271 VILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEA---SSESGSEEEKNLAVQETMELVGS 330
            +         +    GS+      K   GS  A   +++ GS E+  + V ++   +  
Sbjct: 253 GM-------GFHAPKIGSNGVEMAAKFPSGSQRARVVNTDHGSPEQLQIPVTDSGRHILE 312

Query: 331 SSEKALCSEQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDV 390
            S    C+E  +  E  +           E  A      +  E +E+   G  +   ++ 
Sbjct: 313 DS----CAELGESKEHMESRMVTETEETQEKKA------ESKEPIEEEPTGAGLNKDKET 372

Query: 391 AANPQDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFEDFSSAAD 450
                      +GE V +++   E     V+KL + +  +A        ++   F+S A+
Sbjct: 373 EER-------TDGERVAEVAP-EERENVAVAKLQESQPGNAVIDKE--TIDLLAFTSVAE 432

Query: 451 MEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAK 480
           +E+LGLE+LK EL A GLKCGGTLQERAARLF ++    +++   L AK
Sbjct: 433 LELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAK 444

[Close]

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot
Match: Q5RET9 (Replication stress response regulator SDE2 OS=Pongo abelii OX=9601 GN=SDE2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-17
Identity = 119/409 (29.10%), Postives = 187/409 (45.72%), Query Frame = 0


Query: 91  RLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEW-------KA 150
           RL GGKGGFGS+LR  A  A  +KT N +ACRD+SGRRLR VN EK + EW       +A
Sbjct: 73  RLCGGKGGFGSMLR--ALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAEREA 132

Query: 151 EEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEVEKSVRDAVMK- 210
           E+E++RLE++  + ++ K            +  Y ++  E + R    V K ++ A  K 
Sbjct: 133 EKEQKRLERLQRKLVEPKHCF--------TSPDYQQQCHEMAERLEDSVLKGMQAASSKM 192

Query: 211 -----GGKGKR----KGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEKS 270
                    KR    K ++    +  K+   W+G   +  ++    +S D DSEE    S
Sbjct: 193 VSAEISENRKRQWPTKSQTDREASAGKRRYFWLGMEGLETAEGSSSESSDDDSEEAPSTS 252

Query: 271 VILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEA---SSESGSEEEKNLAVQETMELVGS 330
            +         +    G S      K   GS  A   +++ GS E+  + V ++   +  
Sbjct: 253 GM-------GFHAPKIGGSGVEMAAKFPSGSQRARVVNTDPGSPEQLQIPVTDSGRHISE 312

Query: 331 SSEKALCSEQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDV 390
            S    C+E  +  E  +           E  A      +  E +E+   G  +   ++ 
Sbjct: 313 DS----CAELGESKEHMESRMVTETEETQEKKA------ESREPIEEEPTGAGLNKDKET 372

Query: 391 AANPQDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFEDFSSAAD 450
                      +GE V ++ +  E     V+KL + +  +A        ++   F+S A+
Sbjct: 373 EER-------TDGERVAEV-ACEERENVAVAKLQESQPGNAVIDKE--TIDLLAFTSVAE 432

Query: 451 MEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAK 480
           +E+LGLE+LK EL A GLKCGGTLQERAARLF ++    +++   L AK
Sbjct: 433 LELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAK 444

[Close]

BLAST of CmaCh08G001300 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 325.1 bits (832), Expect = 9.5e-89
Identity = 225/470 (47.87%), Postives = 281/470 (59.79%), Query Frame = 0


Query: 13  SGRIFNLFVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSV 72
           S +    FVRLLDGK+L L  +SP  +G  IK R+FE T IP + QRL++G  QI D S 
Sbjct: 5   SSKPLQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSA 64

Query: 73  VSCFDESSGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHV 132
           +S  D       TV+L+L L GGKGGFGSLLRG   KAGQKKTNNFDACRDMSGRRLRHV
Sbjct: 65  ISQPD------ATVNLVLSLRGGKGGFGSLLRGGGMKAGQKKTNNFDACRDMSGRRLRHV 124

Query: 133 NAEKRLEEWKAEEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEV 192
           NAE RL+EWK  EE R LEK A E+LKK+S   K+GVG+ ATQKYV +Y+EES +C+  V
Sbjct: 125 NAENRLQEWKDGEEGRNLEKKALEYLKKQSNKVKQGVGNGATQKYVNKYKEESDKCILAV 184

Query: 193 EKSVRDAVMKGGKGKRKGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEK 252
           + ++ ++      GKRK +        K+LKIW GKR + +SDSDD D      +EE+EK
Sbjct: 185 DLALNESFK---NGKRKAKIGAESEKKKRLKIWKGKRAVEDSDSDDSD------DEEDEK 244

Query: 253 SVILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNLAVQETMELVGSSS 312
           SV+LN+G                  G  G  SG++S  SGSEEE +  +  + ++V    
Sbjct: 245 SVVLNNG------------------GHDGDSSGKSSCNSGSEEENDAVMHRSFDVV---K 304

Query: 313 EKALCSEQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDVAA 372
           E+    +   E E+ND     AV    +A  VA   DQ ++V +    G    N+ DVA 
Sbjct: 305 EEITGVQGIIEEEMNDLPVSVAV---DDANTVADEMDQLEKVEKSS--GDAGKNLVDVAC 364

Query: 373 NP--QDMSVLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFEDFSSAAD 432
                  +V   G   E +S                    A       PLNF+DF+S AD
Sbjct: 365 ETLITSAAVKREGTAKETVS------------------VDAVCCKPVEPLNFDDFNSPAD 415

Query: 433 MEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAKK 481
           MEVLG+ERLK+ELQ+RGLKCGGTL+ERAARLFLLKSTPLDKLPKKL AKK
Sbjct: 425 MEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAKK 415

[Close]

BLAST of CmaCh08G001300 vs. TAIR 10
Match: AT3G06455.1 (ubiquitin family protein )

HSP 1 Score: 203.0 bits (515), Expect = 5.5e-52
Identity = 168/462 (36.36%), Postives = 223/462 (48.27%), Query Frame = 0


Query: 20  FVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSVVSCFDES 79
           FVRLLDGK++ L  +SP   G  IK R+FE T IP + QRL++G  QI   S +S  D  
Sbjct: 12  FVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAISQSD-- 71

Query: 80  SGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLE 139
                T++L+L L GGKGG GSLLR    KAGQKKTNNFD+C                  
Sbjct: 72  ----TTMNLVLSLRGGKGGLGSLLRNVVMKAGQKKTNNFDSC------------------ 131

Query: 140 EWKAEEEERRLEKVAEEFLKKKSKVGKRGVGDSATQKYVERYREESARCVAEVEKSVRDA 199
                                        VGD ATQK V +Y+  S +C+  V  ++ + 
Sbjct: 132 -----------------------------VGDGATQKNVNKYKGGSDKCILAVHLALNET 191

Query: 200 VMKGGKGKRKGRSMPNGADAKKLKIWMGKRKMGESDSDDLDSDDSDSEEENEKSVILNDG 259
              G K K K         +K++KIW GKR + +SDSDD       S+EE+EKSV+   G
Sbjct: 192 FKNGNKRKGKKMGTAESEKSKRIKIWNGKRAVEDSDSDD------SSDEEDEKSVV---G 251

Query: 260 CQSDL-NKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNLAVQETMELVGSSSEKALCS 319
            Q D  +KD + SS SV  G H             + E +  V ++ ++V     +    
Sbjct: 252 GQVDSDHKDTDESSGSVLDGSH-------------DGENDFVVHQSSDVV---KGEITVV 311

Query: 320 EQFDEVEINDQTTQGAVVRCSEAVAVAVSADQEDEVVEQGVHGVDITNIEDVAANPQDMS 379
           ++ +E +++D              AVA + DQ ++V              + ++   D  
Sbjct: 312 QRINEEKMDD-------------FAVADAMDQLEKV--------------EKSSGNDDFV 345

Query: 380 VLNNGEMVEDLSSLPEPNGSPVSKLSDHEETSASKSNSDAPLNFEDFSSAADMEVLGLER 439
           V   G   E +   P                         PLNF +F +A DMEVLG+ER
Sbjct: 372 VKRGGTAKERVCCKPV-----------------------EPLNFAEFKAATDMEVLGMER 345

Query: 440 LKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLHAKK 481
           LK+ELQ+RGLKC GTL+ERAARLFLLKSTPLDKLPKKL AKK
Sbjct: 432 LKTELQSRGLKCRGTLRERAARLFLLKSTPLDKLPKKLLAKK 345

[Close]

BLAST of CmaCh08G001300 vs. TAIR 10
Match: AT1G65350.1 (ubiquitin 13 )

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-07
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 19  LFVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSVVSCFDE 78
           +FV+ L GKT+ L++ S     + +K ++ +  GIPP+ QRL+   +Q+ED   ++  D 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDN-VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA--DY 62

Query: 79  SSGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFD 120
           +  K  T+HL+LRL GG   F   L G       + ++  D
Sbjct: 63  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100

[Close]

BLAST of CmaCh08G001300 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-07
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 19  LFVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSVVSCFDE 78
           +FV+ L GKT+ L++ S     + +K ++ +  GIPP+ QRL+   +Q+ED   ++  D 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDN-VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA--DY 62

Query: 79  SSGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFD 120
           +  K  T+HL+LRL GG   F   L G       + ++  D
Sbjct: 63  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100

[Close]

BLAST of CmaCh08G001300 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-07
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 19  LFVRLLDGKTLALKLTSPSVHGHAIKHRLFETTGIPPNHQRLVTGVRQIEDDSVVSCFDE 78
           +FV+ L GKT+ L++ S     + +K ++ +  GIPP+ QRL+   +Q+ED   ++  D 
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDN-VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA--DY 62

Query: 79  SSGKFLTVHLLLRLLGGKGGFGSLLRGAATKAGQKKTNNFD 120
           +  K  T+HL+LRL GG   F   L G       + ++  D
Sbjct: 63  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100

The following BLAST results are available for this feature:

BLAST of CmaCh08G001300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07G43	3.0e-23	31.91	Replication stress response regulator SDE2 OS=Xenopus tropicalis OX=8364 GN=sde2...	[more]
Q7T293	1.2e-22	31.63	Replication stress response regulator SDE2 OS=Danio rerio OX=7955 GN=sde2 PE=2 S...	[more]
Q6NRI5	3.5e-19	31.33	Replication stress response regulator SDE2 OS=Xenopus laevis OX=8355 GN=sde2 PE=...	[more]
Q6IQ49	5.6e-17	29.34	Replication stress response regulator SDE2 OS=Homo sapiens OX=9606 GN=SDE2 PE=1 ...	[more]
Q5RET9	7.3e-17	29.10	Replication stress response regulator SDE2 OS=Pongo abelii OX=9601 GN=SDE2 PE=2 ...	[more]

BLAST of CmaCh08G001300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01000.1	9.5e-89	47.87	Ubiquitin-like superfamily protein	[more]
AT3G06455.1	5.5e-52	36.36	ubiquitin family protein	[more]
AT1G65350.1	5.4e-07	32.67	ubiquitin 13	[more]
AT4G05320.2	5.4e-07	32.67	polyubiquitin 10	[more]
AT4G02890.1	5.4e-07	32.67	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..163
None	No IPR available	GENE3D	3.10.20.90		coord: 14..115 e-value: 7.1E-10 score: 40.4
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 420..479 e-value: 4.2E-27 score: 93.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..422
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..236
None	No IPR available	PANTHER	PTHR12786:SF1	REPLICATION STRESS RESPONSE REGULATOR SDE2	coord: 18..479
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 18..479
IPR024974	Sde2, N-terminal ubiquitin domain	PFAM	PF13019	Sde2_N_Ubi	coord: 18..161 e-value: 2.9E-33 score: 115.0
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 17..95 score: 9.787251
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 14..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001300.1	CmaCh08G001300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding