CmaCh08G000950 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G000950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCRIB domain-containing protein RIC4-like
LocationCma_Chr08: 491482 .. 492821 (-)
RNA-Seq ExpressionCmaCh08G000950
SyntenyCmaCh08G000950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCCTTTGCAAAATTTGTGGCTCTTCCCTTCTTCTCGGGTTGTGCTTCTCGCTCTAGCATCGCAACGGGTACGCCCGTTTCTACAACTACTCAAGGTCGAGAGCTTAACGGTTCAGATGTTAACCTGAGTGTAACAAGTAAGATCAATGGTTTCCTCATCTCTTCTCTTGTTTCCAAATTCCTTTGTTTGTTCTTTCAACCGAACATGGGTCTGTTTTAAAGTGTGTTATATGTTATTGTTAGGGAGAGAAGAAAGTGAACACAAAATTTCTGAAGTGAAAATGAAGAACCCTTCTGGTTTCTTCGTTTTACTTAACATTTCAAATGGAGTTCATAAGTTGGTCAGAAGCTTCAAAACTTTCTCCCAATTATTTGGTAAGCAAAAACTCTCTGCATCTCTTGTAATTATTTATTTACTTGAATTTTTTAGATTGTGAGTTAAGTATTATTACTTCCAAAGAATTTACTAATTTTTTTAACAAATATTGAAAATTGAAGAATGGAGACATGAAATTTTAAAAATTAAACTCTCTATTATGTTGAAACTTTTTACCTTATCCAACCTAACTTGAGAACTCAACCAATTGAAGCTAATGAAAACACCCACCCCCAATAGAGTATTAGTTGAATAACTCCAAGATTATTATATAAATCCCAAGTCATTAAACAAAAGGAGGGCATACCCACCAACTAATTTTGCCTACCTACCATTAATAACAACAGTACTAATCTATCTGTATTGTGTGTGTGTGTGTGTGGAAAACCCTAGTTTTGAGGAAGGAGGAGGAAGAAGACGTAGAGGAGGTGGAGATGGAGATCGGATATCCAACAGATGTGAAGCACGTGACGCACATTGGATTGGATGGCTCAACCACTACAAACCCCATTGTTAAGGGTTGGGATAATAATCTCAATCCCTTTCTCTCTTTTCCTTCCATTTCTCTAAGGCATTTTGAGCTGTCAATGGCTGCTCAAGCACACCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTACCTTCATGATCATTCTTTCTTTCTTTCTCTCTTTCCCTCTTCAACCCTTTTCATTATGAATGTAGCTTCGATGATTTTAAGGATCCTTAATTTCCCTCCTTAACCCATCTTGGTTTTGGTTGGTTAAGGACAACATGATGTTTGTATCATATGCTGCTGTTTTATGAATTTGTTTATACTTCAAGATTCTTCTTTTTTTTCATTTGAATGGCTCGAATCCGTAGTCAATCCTGTTGAGAAAAAAGGAAGACCCAATTCCACGATGTTCAAGAATAAGGAAGACCCAATTTTACGATGTTGTTCAAGAATAGTAAAAGATAG

mRNA sequence

ATGAGAGCCTTTGCAAAATTTGTGGCTCTTCCCTTCTTCTCGGGTTGTGCTTCTCGCTCTAGCATCGCAACGGGTACGCCCGTTTCTACAACTACTCAAGGTCGAGAGCTTAACGGTTCAGATGTTAACCTGAGTGTAACAAGGAGAGAAGAAAGTGAACACAAAATTTCTGAAGTGAAAATGAAGAACCCTTCTGGTTTCTTCGTTTTACTTAACATTTCAAATGGAGTTCATAAGTTGGTCAGAAGCTTCAAAACTTTCTCCCAATTATTTGTTTTGAGGAAGGAGGAGGAAGAAGACGTAGAGGAGGTGGAGATGGAGATCGGATATCCAACAGATGTGAAGCACGTGACGCACATTGGATTGGATGGCTCAACCACTACAAACCCCATTGTTAAGGGTTGGGATAATAATCTCAATCCCTTTCTCTCTTTTCCTTCCATTTCTCTAAGGCATTTTGAGCTGTCAATGGCTGCTCAAGCACACCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTACCTTCATGATCATTCTTTCTTTCTTTCTCTCTTTCCCTCTTCAACCCTTTTCATTATGAATGTAGCTTCGATGATTTTAAGGATCCTTAATTTCCCTCCTTAACCCATCTTGGTTTTGGTTGGTTAAGGACAACATGATGTTTGTATCATATGCTGCTGTTTTATGAATTTGTTTATACTTCAAGATTCTTCTTTTTTTTCATTTGAATGGCTCGAATCCGTAGTCAATCCTGTTGAGAAAAAAGGAAGACCCAATTCCACGATGTTCAAGAATAAGGAAGACCCAATTTTACGATGTTGTTCAAGAATAGTAAAAGATAG

Coding sequence (CDS)

ATGAGAGCCTTTGCAAAATTTGTGGCTCTTCCCTTCTTCTCGGGTTGTGCTTCTCGCTCTAGCATCGCAACGGGTACGCCCGTTTCTACAACTACTCAAGGTCGAGAGCTTAACGGTTCAGATGTTAACCTGAGTGTAACAAGGAGAGAAGAAAGTGAACACAAAATTTCTGAAGTGAAAATGAAGAACCCTTCTGGTTTCTTCGTTTTACTTAACATTTCAAATGGAGTTCATAAGTTGGTCAGAAGCTTCAAAACTTTCTCCCAATTATTTGTTTTGAGGAAGGAGGAGGAAGAAGACGTAGAGGAGGTGGAGATGGAGATCGGATATCCAACAGATGTGAAGCACGTGACGCACATTGGATTGGATGGCTCAACCACTACAAACCCCATTGTTAAGGGTTGGGATAATAATCTCAATCCCTTTCTCTCTTTTCCTTCCATTTCTCTAAGGCATTTTGAGCTGTCAATGGCTGCTCAAGCACACCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTACCTTCATGA

Protein sequence

MRAFAKFVALPFFSGCASRSSIATGTPVSTTTQGRELNGSDVNLSVTRREESEHKISEVKMKNPSGFFVLLNISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPIVKGWDNNLNPFLSFPSISLRHFELSMAAQAHPPPPPPPPLLLPS
Homology
BLAST of CmaCh08G000950 vs. ExPASy Swiss-Prot
Match: Q9FFD5 (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 0

Query: 6   KFVALPFFSGCASRSSIATGTPVSTTTQGRELNGSDVNLSVTRREESEHKISEVKMKNPS 65
           + V LPF  GC S SS+A  +P+S             +  V R +E E       MKN  
Sbjct: 7   RLVVLPFSIGCISVSSVAVLSPLSKPHHHH-------SRQVIREQEEED-----NMKNVF 66

Query: 66  GFFVLL--NISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLD 125
            F  +    IS G++++ +SFKT SQLF  + EE+E+VE   MEIG PT+VKHV+HIG +
Sbjct: 67  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 126

Query: 126 -GSTTTNPIVKGWDNNLNPFL 144
            G T      KGW++ + P L
Sbjct: 127 SGLTAATGPGKGWEDLIPPEL 135

BLAST of CmaCh08G000950 vs. ExPASy Swiss-Prot
Match: Q8GYU0 (CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 72  NISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTT 129
           NIS+G+++++RSFK+FS  F+ R EEE    E EMEIG+PTDVKH++HIG+DG+ TT
Sbjct: 36  NISDGIYRIIRSFKSFSHFFI-RYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTT 91

BLAST of CmaCh08G000950 vs. ExPASy Swiss-Prot
Match: Q1G3Y0 (CRIB domain-containing protein RIC9 OS=Arabidopsis thaliana OX=3702 GN=RIC9 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-07
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 82  RSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPI----VKGWDN 141
           +SFK FS +F + +EE       EMEIGYPTDV+HV+HIG D S+++ P      K  +N
Sbjct: 11  KSFKCFSDIFDVEEEE-------EMEIGYPTDVRHVSHIGWDSSSSSAPSWLHEFKTSNN 70

Query: 142 NLNPFLSFPSISLR 152
            L P  S+P   L+
Sbjct: 71  VLEPNSSWPFQDLK 77

BLAST of CmaCh08G000950 vs. ExPASy Swiss-Prot
Match: Q9M0Y9 (CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.0e-06
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 80  LVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPIVKGW 136
           + + FK  SQ+F + KE +      E+EIG+PTDVKHV HIG +GS+ + P   GW
Sbjct: 8   IYKGFKCISQIFAVEKERD------EIEIGFPTDVKHVAHIGWEGSSGSAP---GW 54

BLAST of CmaCh08G000950 vs. ExPASy Swiss-Prot
Match: Q1G3K8 (CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-05
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 74  SNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPIVK 133
           S  +  L++  +  SQ+F +  E+EE     EM+IG PTDVKHV HIG DG  + N    
Sbjct: 7   STKMKSLLKGLRYISQVFAIEGEKEE-----EMQIGNPTDVKHVAHIGWDG-PSDNATAP 66

Query: 134 GWDNNLNPFLSFP 147
            W   +N F S P
Sbjct: 67  SW---MNDFKSSP 70

BLAST of CmaCh08G000950 vs. TAIR 10
Match: AT5G16490.1 (ROP-interactive CRIB motif-containing protein 4 )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 0

Query: 6   KFVALPFFSGCASRSSIATGTPVSTTTQGRELNGSDVNLSVTRREESEHKISEVKMKNPS 65
           + V LPF  GC S SS+A  +P+S             +  V R +E E       MKN  
Sbjct: 7   RLVVLPFSIGCISVSSVAVLSPLSKPHHHH-------SRQVIREQEEED-----NMKNVF 66

Query: 66  GFFVLL--NISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLD 125
            F  +    IS G++++ +SFKT SQLF  + EE+E+VE   MEIG PT+VKHV+HIG +
Sbjct: 67  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 126

Query: 126 -GSTTTNPIVKGWDNNLNPFL 144
            G T      KGW++ + P L
Sbjct: 127 SGLTAATGPGKGWEDLIPPEL 135

BLAST of CmaCh08G000950 vs. TAIR 10
Match: AT1G27380.2 (ROP-interactive CRIB motif-containing protein 2 )

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-14
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 72  NISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTT 129
           NIS+G+++++RSFK+FS  F+ R EEE    E EMEIG+PTDVKH++HIG+DG+ TT
Sbjct: 36  NISDGIYRIIRSFKSFSHFFI-RYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTT 91

BLAST of CmaCh08G000950 vs. TAIR 10
Match: AT1G27380.1 (ROP-interactive CRIB motif-containing protein 2 )

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-14
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 72  NISNGVHKLVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTT 129
           NIS+G+++++RSFK+FS  F+ R EEE    E EMEIG+PTDVKH++HIG+DG+ TT
Sbjct: 36  NISDGIYRIIRSFKSFSHFFI-RYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTT 91

BLAST of CmaCh08G000950 vs. TAIR 10
Match: AT1G61795.1 (PAK-box/P21-Rho-binding family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 82  RSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPI----VKGWDN 141
           +SFK FS +F + +EE       EMEIGYPTDV+HV+HIG D S+++ P      K  +N
Sbjct: 11  KSFKCFSDIFDVEEEE-------EMEIGYPTDVRHVSHIGWDSSSSSAPSWLHEFKTSNN 70

Query: 142 NLNPFLSFPSISLR 152
            L P  S+P   L+
Sbjct: 71  VLEPNSSWPFQDLK 77

BLAST of CmaCh08G000950 vs. TAIR 10
Match: AT4G04900.1 (ROP-interactive CRIB motif-containing protein 10 )

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-07
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 80  LVRSFKTFSQLFVLRKEEEEDVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPIVKGW 136
           + + FK  SQ+F + KE +      E+EIG+PTDVKHV HIG +GS+ + P   GW
Sbjct: 8   IYKGFKCISQIFAVEKERD------EIEIGFPTDVKHVAHIGWEGSSGSAP---GW 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FFD54.7e-1439.72CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1... [more]
Q8GYU01.2e-1259.65CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1... [more]
Q1G3Y05.5e-0744.59CRIB domain-containing protein RIC9 OS=Arabidopsis thaliana OX=3702 GN=RIC9 PE=1... [more]
Q9M0Y98.0e-0646.43CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE... [more]
Q1G3K84.0e-0541.10CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1... [more]
Match NameE-valueIdentityDescription
AT5G16490.13.3e-1539.72ROP-interactive CRIB motif-containing protein 4 [more]
AT1G27380.28.2e-1459.65ROP-interactive CRIB motif-containing protein 2 [more]
AT1G27380.18.2e-1459.65ROP-interactive CRIB motif-containing protein 2 [more]
AT1G61795.13.9e-0844.59PAK-box/P21-Rho-binding family protein [more]
AT4G04900.15.7e-0746.43ROP-interactive CRIB motif-containing protein 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000095CRIB domainPFAMPF00786PBDcoord: 107..127
e-value: 2.4E-5
score: 24.6
IPR000095CRIB domainPROSITEPS50108CRIBcoord: 108..121
score: 8.713597
IPR044509CRIB domain-containing protein RIC2/4PANTHERPTHR46931CRIB DOMAIN-CONTAINING PROTEIN RIC2coord: 4..162
NoneNo IPR availablePANTHERPTHR46931:SF7CRIB DOMAIN-CONTAINING PROTEIN RIC4-LIKEcoord: 4..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G000950.1CmaCh08G000950.1mRNA