CmaCh08G000400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G000400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pre-mRNA-processing factor 39-like
Location	Cma_Chr08: 206376 .. 216467 (+)
RNA-Seq Expression	CmaCh08G000400
Synteny	CmaCh08G000400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTACATTTTATATGCATGACGCCACTTTCAGAGCTCTAGGGTTTCTGGGTGGCACGAAAGTTAGGGTTTTTACATAACTACCCCATCAACTATAGCTATTTTCACAAATGCCCCTGGCCTATTATTATTCACCGTAGTTATTTTATTTAACGCAAACATTTTTTTGGTATAAACTAATATTTTATTTAACGCAAATTTTTTTGGTATAAACAATATTGAAAAAACAATTTAAAATTTTGTCGAGCGACCAAAATTTGGTAGAAGCCCAATCTAACAGGTTCGGATTGAGGTGGGCCGATTTACAGTGGATAGGCCCAGTAAGGCATTATAATGGCGAAGGGGAAAACGGTAATCTCCATCGCCCTTCTGCCCTCGACTCCTCAAAAATCAAGCAGAGGGAGTCTAAGCTCCTTTTCTCTCGAATTCTCAATTAGCTTCGCATTTCAAGGGCACACCCATTTGGTTTTTTTCTTCCATCAATTTCCACTCCTCTCTCCACTCCACACCCTCGTCTTCTTCTTCCTTTCGGTAAGTTCTTCTGCTTCCTCTTGTACAACTGCTCCTCGATTGGATGTTCTGGAAGTTTCATCTTTTTCTATGGCTATTATGTTTGTTGGTCATGTTACTGCTCTGTCATGTTCGCAACTGATTGTATGTTCTGCTATGCTCTTCTGCGCCATTAATTTTTTTTGTTTTATCGTTAACTTTCCATGTCTTCTTTGTTTTTGGGTTTGATTCAAACTAATGTACATACCAGAGTTGATGCTTCTGAAGTAAAGGGGCTGCTGTTTAATTCAAGCACAATATCTTTTGTTTTTCTGGGTTTAGGATTCTAGCTTAATTTTTGAAGGCCACCTCCTTCTTCTTTGTCTTTCGTCCCTCTCTGCATAAATTTTATGCGATAGTTGTTTAAATGCATGCAGTTAGGCTAGCAAAGAATTATTTTAGTAGTTTAAGCATGGGGGACAGTGAAACTATAGTTGCCCAAACATCTGAATTCATTAGGTATACATCTGCTGGCTGTGTTTCGAGTGGCTATGCTGATAGCAGTACAAATCTAATTTCTTATCCCGGCGTTTTTCTATCTGTGATCACTGGAGACTTTAAAGTTACACCTATATATGCAGATATGAGTGATGGCAATGCGTATGTTACGGATCCCAATTCTATTCAGCAAGGAAATCATGTTGGTGAGGTAGATGAGGCGATGGTATCTGTAGGAGTGACTGACCATAGTCAGAATAATGCTGTATCAGAAAATTCAGCAATGGAAACTGCTGAAGTAGTCAGTCACGATTCTTCTTTAAATGGAAGCGTTGCAGCTGTATCGGACAATGCCTTTTCTGTTGAGAACGGGAATGCTGTTGAGAATACCAACGAGGCTTCTGAGGAACAATACTTTGTTGATGGTTCTGGTATGTGTCTCTCGTTTTTCGTTTCCTGCATTTCATGAGAATTTCATTTGGCAATAAGCATTTTAACAAATGGGGCAGGCAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAAAATCAATCTAAAAGGTTCTGCAATTTTGAGGGTACACGAAGCAAAAGTGTTATGTTTCTGAACTCTTAAGAGTAATGAAGCTTCTTGAGAAGCAATGAAGAGTTCTGCATTTTGTTTCTTAAAGATGTGTCCTCCTATCTTTTCAAAATCTTAAAAAGCTTTTCCTTCTAAGCTTCCTATTGTATTGAAGTCTTCAGGTTAGTTTTTCGTCCTATTGTTATAAAGACAAGTAGATAGTACCCAAACACCTTCGACTATGAGGCAAGATGAGATATCCAAAATATGCATATATTCGTAATTAAATATCAGAGGGACCTAAATACTTAAAATCAAGCATCTGATGGATAAAAAAAGCACATACATTGTGATCAATGATCCTAACAGTGCTTTAGAAGCGCATTCAGATAGTTCTGCTCTTTAATGGATCTTGTATCTGGATACAGTTTAGACTGTTGGTAGCTAAAAATGGATGTTTCCTTAGAATGGAAAAGAAAGTAACTAGAAATTGATGGTACTCTTTATCTGGATGATTAATCTCTCGATGGTAGCATTGTTTCTCTTAGTATTAGTTAGTCACTTGTGATGGTATATGCTTCATGCTTTTAAAGAGGTTCTGGAGTACTTATTGCTAGGATCCTGCTCATGTCTTGGTAGATACAGCCTCGTCATTTACTTCCGTACGCTTCAGCCAAATTATTTACTGTCTCATAAAAAAAATTATTTCTTGTGTGAAATAAAATAAGCTTGTAAGGTTCGCTGAAAAGGGGCTTGAAAGAACATCAAATTTACATTTTATGTTAAAAGTTAATGTTTTTCCGGTTTTCATTCATAGATGAATTTTCGATGAAACAGCCTTCAAAAGGAGAATTCAAAAACATAAAACTAGCAACCATAAATCCTAGAAATAACAACTACCTAGACCTCAAGCCCACTTGCAGCCGTCTTTTTATTTGATAGGAAGAAGAGTAACACCAACTTGATTAACGTAATCTAAAAAATCTTTTTCTTCGAGAACTAGAGGTTAAGGGCCTTGGCTTAGAACCACTCTCAGTGGGATTAGATGAACAAGAAGGATTGCTGAGAAATAGGGGTTAAATCCCTGTCTTCAACTTCGTTGGAAAGAGAAAATAAACCACCTTCAAAGTTGTCTTCCATAAAGCCAACATTATAATAAAGAGAAGACTGTAATTGCAAAATAATTCAGGGTGGTTTGAGACATTATATTTATTCTACTATCTTCTTAACAAGTTCTCGACTTTCTAGCATTAGTTTAGCTTTAGTTTAGGTTCTAGTCACATTATCATTTCCATGATTATGAAACATTTACACGTTTCTTCCTGGATCTGAGGAACCTTTAGTTTGGCTTACGTTGCTGCTCATCTTCTCTTTTGGTTTCCTTGTTATCATTATTATGACTCAATTACTGCCTCCAAGCGCATTTTGATCCATTATTGTCTTTGACTTTTTGTTTGATACCTTGGTTTATGGACGTGAGGCATTATTCACTCTCATGTTGCTGCTCAGGGTGAGAGCTTGTTCTCGACCTTTATAAATATATGAAGAAAATAATGTGCATATTTAGGTTACATTGTCGCTAAACTTCTTTCTATTTGATTACTGTTATCAGTAATTACTTCTTTTTGTTGCCTAATATTTCCTCACCTTTTTTTGGCAGTACCTCCATTATCTGCTGAAGAAGATAGACTGTGGAACATTGTGAGGGCCAATTCTCTAGATTTTAATGCTTGGACTTCTTTGATCGAAGAGACAGAGAAGGTGGCTGAGGTATGCAAGAACAAATATTAAAAAGTATTATGGTTTACCATTTTATGGAAAGACTTATTCCAGTTTTGGAATATTTTCAGGATAACATACTCAAAATCCGGCGAGTTTATGATGCCTTTTTAGCAGAATTTCCTTTATGCTATGGTTATTGGAAGAAGTATGCAGATCATGAGGCACGGTTTGGTTCAACTGACAAAGTTGTTGAGGTGTATGAACGAGCAGTGCATGGGGTCACCTACTCGGTTGATATTTGGCTGCATTACTGCATATTCACTCTTAGTACATATGGAGATCCAGAGACCATCAGAAGGTATAGCATTCTGTTTTCCTATTTGCATTTCCTGGTGTACCAATACTATGACTCTTAGTTACTTGGACCTGATAACAATCTTCTTCTCTTTGCTTGTAACCTCTGTTTAGATGGCTGTACCAGTGATTTCCTACATGTAAGGTGGAAAGATTTGATTGAAATATAGATTGGAATTGCATGTTCCAATGTGCATCCCATGATATGGGGTTACAACGTTATATGCCTTTTTTAAAGTTATTTTTAATAAAAGATATAGTGTCAATTTCCCATTGTCTATTGTGGATTATGCCTTAGTCTGTAGTTATGGTGAACTACAGCAGTTGTTTAACCTTGGTCCACTGAGATGCATCAATATACAAATTGCTGCTGGGAATATCACGTTCAGTTATGGGCTAAGATGGCCTCTATCATTGCTTCATTCACGGACATAATTTGATTTTTAGGAAGGTAATTGCAGCATGCTGAAGTGTCATATGCTGTTAGAGTAAATTGTTCCTTCACCTTCAACGTTAGTGCAGTTGTTTCTGTTTTGTGAATACTTTGCACCACTTGATGATCTTTAGTTACTTAATAACCTTTTCCTGGTTGATGATATTTCAGGCTTTTTGAGAGAGGATTAGCATATGTTGGGACAGATTACCTCTCCTTTCCCCTTTGGGATAAATATATTGAATACGAGTACACGCAGCAGGAGTGGGGTCGACTGGCTATGATATACACACGTATACTAGAAAATCCAAATCAACAGTTGGATCGGTATTTCAATAGGTGAGTCTTGCGAATCCGGACAATATTACTGTCTGTCATAATAATTTGGTATTGCCTTTTCCGGTGATCTTAATTCTTTTGCTTTTGAACTTGGTTGCTACTCTTAGATGAACTTGTCATACTTGCTAAGTCAACATTTTGTTGCAGGCTGGGGGTTATACACCCTTTTGTTGTCTGAATTACATTCTGTGTCAGGGAAAGCTATTCAGATAGATGGTTGTATGGGATTGATACTAATCCATATAGCTTTGTTAAACTTCTTTCCTTGATAAATAATCTAAAATGTCCTTTTCCCTTTGGATCACGATGCAAATGTGTTGCAGCTTCAAGGAGTTGGCTGCAAATCGGCCATTGTCAGAGTTGAAGAGTTCTGAGGAGGCTGTATTAGATGTGCAATCAGAGGCTGGTGATCAAGTAAATGGGGAGGAAGGTCATCCTGATGCCACGGAACCATCATCTAAAACTGTAAGTGCTGGCTTAACAGAAGCAGAGGAGTTGGAGAAGTATATCGCCATTAGAGAAGAAATCTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGAAGGCCCTACTTTCATGTTAGACCACTAAATGTTGCAGAGCTTGATAATTGGCATAGTTACTTGGATTTTATAGAACAAGAAGGAGACTTAAACAAGGTACTTTAGTTTGTTTCTTGTTTTAAATATGTTTATTTTTTTTCGTTTTTAGTCGTCCTTGTTATATATTGACTTACAGTTAAAAAATATCTGCTGCATCATATGCTTTACTGGCTAAACCATTGGATGAAGCAACTATTTAATCGGGAATTTGAACTGAGACTAAAGCAGGGGCCTTCAATTTGGTTTCTTTAAGGCTAAGTACTTCGAACTCTCATTTATCAGTGGAGATTCTAGGTTCATGATGTGTTTGTACAGTAACTTTTTATTCTTTTTAAAATTCCAATGTTATGCATGCAGGTATCTTATCTTCCTAACCATCTGTCTGTCAGGCAAGGAGGGTCCCTCATTTCATATTTGAGGGGCCTCTCTATTCTACTGAGGAGTATTTCTGTTGCATATCTCTTTTCTGTTTCTTATCACATCTTTACATAAGGAATTTTAAATGTGAAGACCGTTTTATATGTTTTTCCTTTTTTCTTGTTTGAATTTTTTGTGGATAGGTGGTGAAGTTATATGAGAGATGCGTTATTGCTTGTGCCAACTATCCTGAATACTGGGTTCGGTATATTTTATACATGCAAGCAAGCGACAGTATGGATCTTTCCAATGATGCCCTTGCTCGAGCAAGCCAAGTTTTTGTCAAGGTAGGGAATACATGCATCTACCATTTACCTAATCTTATTATAATTGGTTGTAGTTATCATGATTAAGGATGACCTAATCATGTTCCTACATAGCTTCTAATGTATCAAGAGGCTTACTAGTCAAAAGGTTTTGGCTGGGCCACACAAGTTGTGGGCTTCCACTGGTGTACTTAGGGTTGTTTCCTCTTCCTGCATCCTCTTTAAGTGAGAAACTCAACTATCATTAACTAGTACAATTATCACCTAATGTATGCTTACAAATTATAATATTTGGTTGCAACAATGACTAGTACAGAAAAATGTGCATTGATCAGTTTATTTTCACAAAAGGTTTGGTTGAAGCATTTTGAGAAAGACAGAGCATAGTCAACCTAAGTCCACAAGTAAATCAATATGGCATGACACAGTCAATGTTAGTGCATTTTCCAAATAATCAAAAGACAGCACCAGTTTCCAAAAATTTATGACCTAGCTTGTATTGACCAAGATACTATGACATTGATGACAGAAATATTTGTTTGTACTTTTTTAAACGTTTCAATATTCTCATACAGTCTTACTTGATGAGTTATGAGAGACATTAAGATGTATGCTTTTATGTATATTCACTCCAATTTATATTATTTGGGAAATTGGAGATTCAAGGCATAAAAACATCCTTATTTTCATGGGCTGTATTGTATGTGAAAAAGGTACTTAAATATCTCTAGCCCTTGTGTCCTTCTCCTGTGTACATAACCCTATCTCATCTTGGCCACCAAATCCTTTCTCAGTCCAACCAAGTGGTTGACTAATACAAACATCTCGATTGTAAGCTCTGTTAATGTGGATTCATTTTTCCTCCCTATATGCAATTATTTTGCTTTATGAATTATTGCTATATCTTCTTTTTGAAGAAAAGTCCCAGTGTATTATTTTATACATTTTCTTAATTAAACAAGTTCGAATAATGTTTGACAGCTTGCTGGATTGTAATATGTATTCTCTATGACTATGTTAGTCAGCTGGTATCCCTAGATATTGATGTCTATGATGCATGGAATGGTAGACCTTTTTTAAAAAGTTATTTAGTTTGGATTTTAAGTTAATATGTACATGCATCCCAAACTTCAACAGAGACGACCGGAGATCCATTTATTTTCTGCTCGGTTCAAGGAGCAGAACGGGGATATTGCTGGTGCTCGAGCCTCTTATCAACTCGTTCATACTGAAATTTCACCTGGCCTTCTTGAAGCAATAATTAAGCATGCTAATATGGAACATCGTCTGGTAAGATGTCTTAAATAAGTTGTGATACATAGTAATGCATGGATTTTTAAATTTGGCCGTTTGAATTTTCAGGGAAACCTGGAAGAGGCATACTCTGTATATGAACAGGCCATCGCCATCGAAAGAGGAAAAGAACATTCTCGTGCATTACCGCTGTTATATGCTCAATACTCGAGATTTCTGAACTTGGTATGTTTGCTGAAATTATGGTCCCTCTGCTTGGAGATTGTTCACATAATTAAGCATTCTGCATTTGTCCTTTCATAGTTTTCATTATGCTTCTTTACACCTCTAACTTAAATGGGGAACACTAAACACATTTTGATTAATAATATAGGTTTCTAAGGATTTTGGATGTTACTGTTTATCTAGAGTTTACACCAAAAAAGTGCAACAAAAATAAAAGAGTCCAAACAGAAAATTGGGGTTTTTGTTCATTGTTTTTGCAAAAAAGAAAAAAAGAAAAATTGCCACCACAACGAAGGGTCTCAAGGAGCGGATGACTCGAAGTAGGTAGGACACGATGCAACCTAGCATCAAAGGAGAAAATCTTCTGAAACCCTTGAATGAGAATTTATTATGATTCAAAAAGTCTGCCAATGCAAAGAAGGAACCACATATTTATCGAGAATTTAAGCTAAGTAATTAAACTAACCTAACTATAAGCCTTACTTAAAAAGTGTCTTTTGGTGTATTTCTGTGTGTATTTTCTATCTTATTTAGAAAATTCGGCTATTTCATATTTTTGTTGTACCTAGTATTGCTGAGGTGGTTTGGAAATGTTTTTAAACTACTGGCCTTTTTTCTTTTTTTGTTGATACTGATGCACAGCTTTTGAAGGGAAGTATTCCCCAGTTGTGCAAGACATTTCGTTTATATTAAAATAAAGAAGCTTGCTATATTTTTCTTTGGTCTTCTCAATTTTTTGAGCAGTCTCTTCTGGGGGCATGCGATTAGTTGAATCAGCCTTTTTCTTGATTTCTGGAGCGTTGTTTTCTTAGAATCTTCTCTCTTCACTGTGTTGACAGGTATGTAAGAATGAAGGAAAAGCTAGAGAAATTCTTGATAAGGCAGTTGAGCATGGTGAATTATCCAAACCGCTCATTGAGGTACTCCCTCTCTTTCCATATTTGAAATATTTGAATTTAATCTCATAACTGTTGCTTTCCTGCGGTTAAATGAATACCTTTTTGCCTCCATGATTCATCCAGGCCTTGATTCATTTTGAGGCAATTCAGTCAGCAGCAAAGAGAATTGATTATTTAGATTCATTAGTTGAGAAGGTCATAGTGCCCAATACAGAGAATGCATCGGTCGTGAGTGCTTCAATGAGGGAGGAGTTATCAAGCATTTTCTTGGAGGTACGAATAAAGTTCATTATGTTTGCAGGGATAAGGCTTTTGAGGGTTGATAGACGTAATTGCAAGTTAAATATGAAGAATTAACTTCTTGGTCATGAGTATACTAGGAATTGTTCATTTGTTTTGGTTGACCTCACATTGATACAGATTGATAAGATTTTTTAGTACAAAGGTCTCTTGTTTTTCCACCTTAATTTGGATCTCACTCCTCTTTGGAGTTGTCAATATCTCCATTGCATGTATAATATTTTGGTACAGAGCAATACCAAGTTGAAGTATTTTAAAGGTAGAAAGTTCTTATTTGATGTTGCTGAATACGGGAAGTAGATGCTCACGACATGAAATCTTTCTGACATTTTCTTGATCAGAAAATCTTTCTTCCATTAAAATACGTTTGGTTTGTATTTTCCTGAATGCGCTCATGAATGATTTTGCAGTTTCTGAATCTCTTTGGAGATGTTCAGTCAATCAAGAAGGCGGAGGACAGACATGCAAAGCTATTCATTTCACATAAGAGTACATCAGAACTGAAAAAACGCCTTGCGGATGATTATTTAGCTTCTGAAAAAGCAAAAATGGCCAAATCCTATCCTAGTGTTGCTTCGCCAGCACAATCTGTGATGGGTGCTTATCCAACTGGTCAAAACCAGTGGGCAGCTAGCTATGGTTTACAACCGCAAGCCTGGCCACCTGTTGCTCAAGCACAGGGGCAACAATGGGCACCTGGTTATACCCAATCGGTAAATGCCTTTTTATCTTTCACCCTTTTTATTCTTCATATAACAAATAATGGAACATTTCACACAAAAGGTCTAATTGCCCTTGTTATGTTTAGTAAATCCCGTCACTACTTGTGGAAGGTAAAGGCGAATTCACTTGTTTCTCTTTCCATTCCATGTTTTCTGGTTTCTATATACTACATTTCTACCCTTCCAGTCACATAACAGTCATTTGGCTTGCGTTATTTCCCCAAAAAGTAAAGAGCAGAAAAGAAATAACCCTTCTATTGTTTCCTCCCGTCTACATGAATACAGGCCTCGTATAGTGGGTATGGAAGCACATACACGAATCCACCAGTGTCCACATCAGTGTCACAAGCCTCCACTTATGCGACCTATCCTCCTACATACCCTGTCCAGGTACTAAATCCTTCTCATCTCTTATTAATTCCACAATATTTTGTTTTGAGTTTGATGTGTTTGATGAGTACTTGAACTCAAAAATCGTATTTTTCATGAAATGTTGTGTTTATTTACAGCAGCAGGCATATTCTGCACAGAGTTACGCCCAACCGACTGCTCAAGCAACAATTACGCCATCACAGCAGCCAGCTTCAGTGGCTCAGCCGTATTACGGGAGTTACTATATGAATGGATGAGAATTCCCATTAGTTCATTCGTAACTGTAATCTAAAATTTTCCCCTCATGTGCGAGTACGATCTACTGACATCCTGTAGCTTTGTTTCTTAGGGACAAGTGGGTATGGTATAGCTAACTCAAACTAGGGGACAGTTCTAGAATTTTCTTCTGCCCAATTCTTCCTGTCTTTTTTTTTTTTTTTTTTTGTTTGTTCTTTTGATATGCCAATTAGATGTCATGGTTTGGATATCAGAATTTTCTATTGATTGAGAGTTACGAAAGATAGTGATTTCGAGCCAACTCTGTTTCTTGTGAATGTTTATTTGGCAGAACCGATTACGTGGTGTGCTGATGGTTGGCTTAAGCCCCT

mRNA sequence

ATGGCCACTACATTTTATATGCATGACGCCACTTTCAGAGCTCTAGGGTTTCTGGGTGGCACGAAACTTCGCATTTCAAGGGCACACCCATTTGGTTTTTTTCTTCCATCAATTTCCACTCCTCTCTCCACTCCACACCCTCGTCTTCTTCTTCCTTTCGATATGAGTGATGGCAATGCGTATGTTACGGATCCCAATTCTATTCAGCAAGGAAATCATGTTGGTGAGGTAGATGAGGCGATGGTATCTGTAGGAGTGACTGACCATAGTCAGAATAATGCTGTATCAGAAAATTCAGCAATGGAAACTGCTGAAGTAGTCAGTCACGATTCTTCTTTAAATGGAAGCGTTGCAGCTGTATCGGACAATGCCTTTTCTGTTGAGAACGGGAATGCTGTTGAGAATACCAACGAGGCTTCTGAGGAACAATACTTTGTTGATGGTTCTGTACCTCCATTATCTGCTGAAGAAGATAGACTGTGGAACATTGTGAGGGCCAATTCTCTAGATTTTAATGCTTGGACTTCTTTGATCGAAGAGACAGAGAAGGTGGCTGAGGATAACATACTCAAAATCCGGCGAGTTTATGATGCCTTTTTAGCAGAATTTCCTTTATGCTATGGTTATTGGAAGAAGTATGCAGATCATGAGGCACGGTTTGGTTCAACTGACAAAGTTGTTGAGGTGTATGAACGAGCAGTGCATGGGGTCACCTACTCGGTTGATATTTGGCTGCATTACTGCATATTCACTCTTAGTACATATGGAGATCCAGAGACCATCAGAAGGCTTTTTGAGAGAGGATTAGCATATGTTGGGACAGATTACCTCTCCTTTCCCCTTTGGGATAAATATATTGAATACGAGTACACGCAGCAGGAGTGGGGTCGACTGGCTATGATATACACACGTATACTAGAAAATCCAAATCAACAGTTGGATCGGTATTTCAATAGCTTCAAGGAGTTGGCTGCAAATCGGCCATTGTCAGAGTTGAAGAGTTCTGAGGAGGCTGTATTAGATGTGCAATCAGAGGCTGGTGATCAAGTAAATGGGGAGGAAGGTCATCCTGATGCCACGGAACCATCATCTAAAACTGTAAGTGCTGGCTTAACAGAAGCAGAGGAGTTGGAGAAGTATATCGCCATTAGAGAAGAAATCTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGAAGGCCCTACTTTCATGTTAGACCACTAAATGTTGCAGAGCTTGATAATTGGCATAGTTACTTGGATTTTATAGAACAAGAAGGAGACTTAAACAAGCAACTATTTAATCGGGAATTTGAACTGAGACTAAAGCAGGGGCCTTCAATTTGGTTTCTTTAAGGCTAAGTACTTCGAACTCTCATTTATCAGTGGAGATTCTAGGTTCATGATGTGTTTGTACAGTAACTTTTTATTCTTTTTAAAATTCCAATGTTATGCATGCAGGTATCTTATCTTCCTAACCATCTGTCTGTCAGGCAAGGAGGGTCCCTCATTTCATATTTGAGGGGCCTCTCTATTCTACTGAGGAGTATTTCTGTTGCATATCTCTTTTCTGTTTCTTATCACATCTTTACATAAGGAATTTTAAATGTGAAGACCGTTTTATATGTTTTTCCTTTTTTCTTGTTTGAATTTTTTGTGGATAGGTGGTGAAGTTATATGAGAGATGCGTTATTGCTTGTGCCAACTATCCTGAATACTGGGTTCGGTATATTTTATACATGCAAGCAAGCGACAGTATGGATCTTTCCAATGATGCCCTTGCTCGAGCAAGCCAAGTTTTTGTCAAGAGACGACCGGAGATCCATTTATTTTCTGCTCGGTTCAAGGAGCAGAACGGGGATATTGCTGGTGCTCGAGCCTCTTATCAACTCGTTCATACTGAAATTTCACCTGGCCTTCTTGAAGCAATAATTAAGCATGCTAATATGGAACATCGTCTGGGAAACCTGGAAGAGGCATACTCTGTATATGAACAGGCCATCGCCATCGAAAGAGGAAAAGAACATTCTCGTGCATTACCGCTGTTATATGCTCAATACTCGAGATTTCTGAACTTGGTATGTAAGAATGAAGGAAAAGCTAGAGAAATTCTTGATAAGGCAGTTGAGCATGGTGAATTATCCAAACCGCTCATTGAGGCCTTGATTCATTTTGAGGCAATTCAGTCAGCAGCAAAGAGAATTGATTATTTAGATTCATTAGTTGAGAAGGTCATAGTGCCCAATACAGAGAATGCATCGGTCGTGAGTGCTTCAATGAGGGAGGAGTTATCAAGCATTTTCTTGGAGTTTCTGAATCTCTTTGGAGATGTTCAGTCAATCAAGAAGGCGGAGGACAGACATGCAAAGCTATTCATTTCACATAAGAGTACATCAGAACTGAAAAAACGCCTTGCGGATGATTATTTAGCTTCTGAAAAAGCAAAAATGGCCAAATCCTATCCTAGTGTTGCTTCGCCAGCACAATCTGTGATGGGTGCTTATCCAACTGGTCAAAACCAGTGGGCAGCTAGCTATGGTTTACAACCGCAAGCCTGGCCACCTGTTGCTCAAGCACAGGGGCAACAATGGGCACCTGGTTATACCCAATCGGCCTCGTATAGTGGGTATGGAAGCACATACACGAATCCACCAGTGTCCACATCAGTGTCACAAGCCTCCACTTATGCGACCTATCCTCCTACATACCCTGTCCAGCAGCAGGCATATTCTGCACAGAGTTACGCCCAACCGACTGCTCAAGCAACAATTACGCCATCACAGCAGCCAGCTTCAGTGGCTCAGCCGTATTACGGGAGTTACTATATGAATGGATGAGAATTCCCATTAGTTCATTCGTAACTGTAATCTAAAATTTTCCCCTCATGTGCGAGTACGATCTACTGACATCCTGTAGCTTTGTTTCTTAGGGACAAGTGGGTATGGTATAGCTAACTCAAACTAGGGGACAGTTCTAGAATTTTCTTCTGCCCAATTCTTCCTGTCTTTTTTTTTTTTTTTTTTTGTTTGTTCTTTTGATATGCCAATTAGATGTCATGGTTTGGATATCAGAATTTTCTATTGATTGAGAGTTACGAAAGATAGTGATTTCGAGCCAACTCTGTTTCTTGTGAATGTTTATTTGGCAGAACCGATTACGTGGTGTGCTGATGGTTGGCTTAAGCCCCT

Coding sequence (CDS)

ATGGCCACTACATTTTATATGCATGACGCCACTTTCAGAGCTCTAGGGTTTCTGGGTGGCACGAAACTTCGCATTTCAAGGGCACACCCATTTGGTTTTTTTCTTCCATCAATTTCCACTCCTCTCTCCACTCCACACCCTCGTCTTCTTCTTCCTTTCGATATGAGTGATGGCAATGCGTATGTTACGGATCCCAATTCTATTCAGCAAGGAAATCATGTTGGTGAGGTAGATGAGGCGATGGTATCTGTAGGAGTGACTGACCATAGTCAGAATAATGCTGTATCAGAAAATTCAGCAATGGAAACTGCTGAAGTAGTCAGTCACGATTCTTCTTTAAATGGAAGCGTTGCAGCTGTATCGGACAATGCCTTTTCTGTTGAGAACGGGAATGCTGTTGAGAATACCAACGAGGCTTCTGAGGAACAATACTTTGTTGATGGTTCTGTACCTCCATTATCTGCTGAAGAAGATAGACTGTGGAACATTGTGAGGGCCAATTCTCTAGATTTTAATGCTTGGACTTCTTTGATCGAAGAGACAGAGAAGGTGGCTGAGGATAACATACTCAAAATCCGGCGAGTTTATGATGCCTTTTTAGCAGAATTTCCTTTATGCTATGGTTATTGGAAGAAGTATGCAGATCATGAGGCACGGTTTGGTTCAACTGACAAAGTTGTTGAGGTGTATGAACGAGCAGTGCATGGGGTCACCTACTCGGTTGATATTTGGCTGCATTACTGCATATTCACTCTTAGTACATATGGAGATCCAGAGACCATCAGAAGGCTTTTTGAGAGAGGATTAGCATATGTTGGGACAGATTACCTCTCCTTTCCCCTTTGGGATAAATATATTGAATACGAGTACACGCAGCAGGAGTGGGGTCGACTGGCTATGATATACACACGTATACTAGAAAATCCAAATCAACAGTTGGATCGGTATTTCAATAGCTTCAAGGAGTTGGCTGCAAATCGGCCATTGTCAGAGTTGAAGAGTTCTGAGGAGGCTGTATTAGATGTGCAATCAGAGGCTGGTGATCAAGTAAATGGGGAGGAAGGTCATCCTGATGCCACGGAACCATCATCTAAAACTGTAAGTGCTGGCTTAACAGAAGCAGAGGAGTTGGAGAAGTATATCGCCATTAGAGAAGAAATCTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGAAGGCCCTACTTTCATGTTAGACCACTAAATGTTGCAGAGCTTGATAATTGGCATAGTTACTTGGATTTTATAGAACAAGAAGGAGACTTAAACAAGCAACTATTTAATCGGGAATTTGAACTGAGACTAAAGCAGGGGCCTTCAATTTGGTTTCTTTAA

Protein sequence

MATTFYMHDATFRALGFLGGTKLRISRAHPFGFFLPSISTPLSTPHPRLLLPFDMSDGNAYVTDPNSIQQGNHVGEVDEAMVSVGVTDHSQNNAVSENSAMETAEVVSHDSSLNGSVAAVSDNAFSVENGNAVENTNEASEEQYFVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNSFKELAANRPLSELKSSEEAVLDVQSEAGDQVNGEEGHPDATEPSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYLDFIEQEGDLNKQLFNREFELRLKQGPSIWFL

Homology

[Close]

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot
Match: Q4KLU2 (Pre-mRNA-processing factor 39 OS=Xenopus laevis OX=8355 GN=prpf39 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-45
Identity = 108/303 (35.64%), Postives = 161/303 (53.14%), Query Frame = 0


Query: 150 VPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIRRVYDAFLAEFPLCYGY 209
           +PPL  + ++ W  V+A   DFN WT L++  E+  E+++   R+ +DAFLA +P CYGY
Sbjct: 49  LPPLPPDFEKYWKSVQAYPEDFNTWTYLLQYVEQ--ENHLFAARKAFDAFLAHYPYCYGY 108

Query: 210 WKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTY--GDPE---TIRRL 269
           WKKYAD E +  +  +  EVY R +  +T SVD+W+HY  F   T    DPE   T+R  
Sbjct: 109 WKKYADLEKKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGT 168

Query: 270 FERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNSFKELA 329
           FE  +   G D+ S  LW+ YI +E  Q     +  IY+R+L  P Q    +F  FKE  
Sbjct: 169 FEHAVVSAGLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHI 228

Query: 330 ANRPLSELKSSEEAV------LDVQSEAGDQVNGEEGHPDATEPSSKTVSAGLTEAEEL- 389
                 E  +SE+ +        +    G   +   G  +  +P+ +T     TE E + 
Sbjct: 229 QGHLPREFLTSEKFIELRKELASMTLHGGTNDDIPSGLEEIKDPAKRT-----TEVENMR 288

Query: 390 EKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYLDFIEQEGDLN 441
            + I + +EI+   +   SKI  FE  I+RPYFHV+PL  A+L+NW  YL+F E E   N
Sbjct: 289 HRIIEVHQEIFNLNEHEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEF-ELENGSN 343

[Close]

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot
Match: O74970 (Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp39 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.6e-45
Identity = 102/293 (34.81%), Postives = 153/293 (52.22%), Query Frame = 0


Query: 156 EEDRLWNIVRANSLDFNAWTSLIEETEKV--------AEDNILKIRRVYDAFLAEFPLCY 215
           E D+    +  N  DF+AW  L+  +E +        ++  I  +R VYD FL ++PL +
Sbjct: 13  EWDKYNRQINKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLF 72

Query: 216 GYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTYGDPETIRRLFER 275
           GYWKKYAD E      +    +YER + G+ +SVD+W +YC F + T GD   +R LF +
Sbjct: 73  GYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQ 132

Query: 276 GLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNSFKELAANR 335
           G   VG D+LS P WDKY+E+E  Q+    +  +  R++  P  Q  RYF  F +++ ++
Sbjct: 133 GANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQ 192

Query: 336 PLSELKSSEEAVLDVQSEAGDQVNGEEGHPDATEPSSKTVSAGLTEAEE--LEKYIAIRE 395
           P+ +L        DV +     V  E     +      TV  G  E E     +   I  
Sbjct: 193 PIQQLLPP-----DVLASIRADVTREPAKVVSAGSKQITVERGELEIEREMRARIYNIHL 252

Query: 396 EIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYLDFIEQEGDLNK 439
           +I++K +   +K   FE+ I+RPYFHV+ L+ A+L NW  YLDF E EGD  +
Sbjct: 253 QIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQR 300

[Close]

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot
Match: Q86UA1 (Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRPF39 PE=1 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-41
Identity = 118/367 (32.15%), Postives = 180/367 (49.05%), Query Frame = 0


Query: 93  NAVSENSAMETAEVVSHDSSLNGSVAAVSDNAFSVENGNAVENTNEASEEQYFVD----- 152
           N+ + ++   +  VV H +  +  +  V++   S ++   V  + E +E    VD     
Sbjct: 11  NSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEMASAVDLPVTL 70

Query: 153 ----GSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIRRVYDAFLAEF 212
                + PP   E ++ W  V  N  DF  W  L++  E+  E++++  R+ +D F   +
Sbjct: 71  TETEANFPP---EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHY 130

Query: 213 PLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTY--GDPE-- 272
           P CYGYWKKYAD E R  +     EVY R +  +  SVD+W+HY  F   T   GDPE  
Sbjct: 131 PYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETN 190

Query: 273 -TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFN 332
            TIR  FE  +   GTD+ S  LW+ YI +E  Q     +  IY RIL  P Q    +F 
Sbjct: 191 NTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQ 250

Query: 333 SFKELAANRPLSELKSSEEAV-LDVQSEAGDQVNGEEGHP---------DATEPSSKTVS 392
            FKE   N    +L + E+ + L  +  + +  +G++G P         D T+P+     
Sbjct: 251 RFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL--- 310

Query: 393 AGLTEAEEL-EKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYL 435
             +TE E +  + I I +E++   +   SK   FE  I+RPYFHV+PL  A+L NW  YL
Sbjct: 311 --ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYL 367

[Close]

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot
Match: Q1JPZ7 (Pre-mRNA-processing factor 39 OS=Danio rerio OX=7955 GN=prpf39 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.4e-41
Identity = 111/334 (33.23%), Postives = 169/334 (50.60%), Query Frame = 0


Query: 121 SDNAFSVENGNAVENTNEASEEQYFVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEE 180
           S++  ++E  +A +   E + E        P L  E +RL  +V  N  DFN W  L++ 
Sbjct: 116 SESPSNMELEDAPKEPAEPAAEADPAAPQEPELPTEYERLSKVVEDNPEDFNGWVYLLQY 175

Query: 181 TEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYS 240
            E+  E+++L  R+ +DAF   +P CYGYWKKYAD E + G      EVY R +  +  S
Sbjct: 176 VEQ--ENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLS 235

Query: 241 VDIWLHYCIFTL----STYGDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEW 300
           VD+WLHY  F      ++ G+ E+ IR  +E  +   GTD+ S  LW+ YI +E  Q + 
Sbjct: 236 VDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKL 295

Query: 301 GRLAMIYTRILENPNQQLDRYFNSFKE-LAANRPLSELKSSEEAVLDVQSEAGDQVNGEE 360
             +  IY R+L  P Q   ++F  FK+ + +N P   L   E   L V+    ++ +G+E
Sbjct: 296 ANVTAIYDRLLCIPTQLYSQHFQKFKDHVQSNNPKHFLSEEEFVSLRVELANANKPSGDE 355

Query: 361 -------------GHPDATEPSSKTVSAGLTEAEEL-EKYIAIREEIYKKAKEFDSKIIG 420
                        G  D  +P+ +     +TE E +  K I  R+E++   +   SK   
Sbjct: 356 DAETEAPGEELPPGTEDLPDPAKR-----VTEIENMRHKVIETRQEMFNHNEHEVSKRWA 415

Query: 421 FETAIRRPYFHVRPLNVAELDNWHSYLDFIEQEG 435
           FE  I+RPYFHV+ L   +L+NW  YLDF  + G
Sbjct: 416 FEEGIKRPYFHVKALEKTQLNNWREYLDFELENG 442

[Close]

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot
Match: Q8K2Z2 (Pre-mRNA-processing factor 39 OS=Mus musculus OX=10090 GN=Prpf39 PE=1 SV=3)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-39
Identity = 120/361 (33.24%), Postives = 179/361 (49.58%), Query Frame = 0


Query: 85  GVTDHSQNNAVSENSAMETAEVVSHDSSLNGSVAAVSDNAFSVENGNAVENTNEASEEQY 144
           G T +S   AV E+    T E+++         A+ S +A + EN    E  N  +    
Sbjct: 15  GSTGNSSEVAVVEHPDFST-EIMNVTEMEQSPDASPSAHASTEEN----EMANAVNLPVT 74

Query: 145 FVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIRRVYDAFLAEFP 204
             +G  PP   E ++ W  V  N  DF  W  L++  E+  E++++  R+ +D F   +P
Sbjct: 75  EAEGDFPP---EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYP 134

Query: 205 LCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTY--GDPE--- 264
            CYGYWKKYAD E R  +  +  EVY R +  +  SVD+W+HY  F   T   GD E   
Sbjct: 135 YCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNT 194

Query: 265 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNS 324
           TIR  FE  +   GTD+ S  LW+ YI +E  Q     +  +Y RIL  P Q    +F  
Sbjct: 195 TIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQR 254

Query: 325 FKELAANRPLSELKSSEEAV-LDVQSEAGDQVNGEEGHPDATEPSS-KTVSAG--LTEAE 384
           FKE   N    +L + E+ + L  +  + +  +G++G P    PS  + +S    +TE E
Sbjct: 255 FKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDISPAKLITEIE 314

Query: 385 EL-EKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAE-LDNWHSYLDFIEQE 435
            +  + I I +E++   +   SK   FE  I+RPYFHV+PL  A+   NW  YL+F  + 
Sbjct: 315 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIEN 365

[Close]

BLAST of CmaCh08G000400 vs. TAIR 10
Match: AT1G04080.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 453.0 bits (1164), Expect = 2.9e-127
Identity = 235/377 (62.33%), Postives = 282/377 (74.80%), Query Frame = 0


Query: 79  EAMVSVGVT-----DHSQNNAVSENSAMETAEVVSHDSSLNGSVAAVSDNAFSVENGNAV 138
           EAMVS G T     D++ + A  E++  ETA +V    S+N    ++ +    VENG+A 
Sbjct: 5   EAMVSEGYTSAPYGDYNASAATVESTGQETAPIVDASHSVNND--SLVNGTAPVENGSAT 64

Query: 139 ENTNEASEEQYFVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIR 198
           +N    +      D +   LS EE+RLWNIVRANSL+FNAWT+LI+ETE++A+DNI KIR
Sbjct: 65  DNVAVTAPAAEHGDNTGSTLSTEEERLWNIVRANSLEFNAWTALIDETERIAQDNIAKIR 124

Query: 199 RVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLS 258
           +VYDAFLAEFPLCYGYWKK+ADHEAR G+ DKVVEVYERAV GVTYSVDIWLHYC F ++
Sbjct: 125 KVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAIN 184

Query: 259 TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQL 318
           TYGDPETIRRLFER L YVGTD+LS PLWDKYIEYEY QQ+W R+A+IYTRILENP Q L
Sbjct: 185 TYGDPETIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNL 244

Query: 319 DRYFNSFKELAANRPLSELKSSEE---AVLDVQSEAGDQVNGEEGH---------PDATE 378
           DRYF+SFKELA  RPLSEL+S+EE   A + V  +A +    E G            +TE
Sbjct: 245 DRYFSSFKELAETRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTE 304

Query: 379 PSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELD 438
            S K  SA  TE EEL+KY+ IRE +Y K+KEF+SKIIG+E AIRRPYFHVRPLNVAEL+
Sbjct: 305 QSPKLESASSTEPEELKKYVGIREAMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELE 364

[Close]

BLAST of CmaCh08G000400 vs. TAIR 10
Match: AT1G04080.3 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 453.0 bits (1164), Expect = 2.9e-127
Identity = 235/377 (62.33%), Postives = 282/377 (74.80%), Query Frame = 0


Query: 79  EAMVSVGVT-----DHSQNNAVSENSAMETAEVVSHDSSLNGSVAAVSDNAFSVENGNAV 138
           EAMVS G T     D++ + A  E++  ETA +V    S+N    ++ +    VENG+A 
Sbjct: 5   EAMVSEGYTSAPYGDYNASAATVESTGQETAPIVDASHSVNND--SLVNGTAPVENGSAT 64

Query: 139 ENTNEASEEQYFVDGSVPPLSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDNILKIR 198
           +N    +      D +   LS EE+RLWNIVRANSL+FNAWT+LI+ETE++A+DNI KIR
Sbjct: 65  DNVAVTAPAAEHGDNTGSTLSTEEERLWNIVRANSLEFNAWTALIDETERIAQDNIAKIR 124

Query: 199 RVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLS 258
           +VYDAFLAEFPLCYGYWKK+ADHEAR G+ DKVVEVYERAV GVTYSVDIWLHYC F ++
Sbjct: 125 KVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAIN 184

Query: 259 TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQL 318
           TYGDPETIRRLFER L YVGTD+LS PLWDKYIEYEY QQ+W R+A+IYTRILENP Q L
Sbjct: 185 TYGDPETIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNL 244

Query: 319 DRYFNSFKELAANRPLSELKSSEE---AVLDVQSEAGDQVNGEEGH---------PDATE 378
           DRYF+SFKELA  RPLSEL+S+EE   A + V  +A +    E G            +TE
Sbjct: 245 DRYFSSFKELAETRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTE 304

Query: 379 PSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELD 438
            S K  SA  TE EEL+KY+ IRE +Y K+KEF+SKIIG+E AIRRPYFHVRPLNVAEL+
Sbjct: 305 QSPKLESASSTEPEELKKYVGIREAMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELE 364

[Close]

BLAST of CmaCh08G000400 vs. TAIR 10
Match: AT5G46400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 2.7e-64
Identity = 125/291 (42.96%), Postives = 180/291 (61.86%), Query Frame = 0


Query: 156 EEDRLWNIVRANSLDFNAWTSLIEETEKVA-EDNILKIRRVYDAFLAEFPLCYGYWKKYA 215
           + DRL     + +LDF+ WT LI E E  +  D+I K+  VYDAFL EFPLC+GYW+KYA
Sbjct: 30  DNDRLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYA 89

Query: 216 DHEARFGSTDKVVEVYERAVHGVTYSVDIWLHYCIFTLSTYGDPETIRRLFERGLAYVGT 275
            H+ +  + +  VEV+ERAV   TYSV +WL YC F ++ Y DP  + RLFERGL+++G 
Sbjct: 90  YHKIKLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAAYEDPHDVSRLFERGLSFIGK 149

Query: 276 DYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNSFKELAANRPLSELKS 335
           DY    LWDKYIEY   QQ+W  LA +Y R L+ P+++LD Y+ +F+++AA+     LK 
Sbjct: 150 DYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLDLYYKNFRKIAAS-----LKE 209

Query: 336 SEEAVLDVQSE-AGDQVNGEEGHPDATEPSSKTV-------SAGLTEAEELEKYIAIREE 395
             +  +DV  + + D +  +  H   T+     V       S+    ++ L  Y++I E+
Sbjct: 210 KIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSSAVSKALHTYLSIGEQ 269

Query: 396 IYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYLDFIEQEGDLN 438
            Y+ +++   KI  FET IRRPYFHV+PL+  +LDNWH+YL F E  GD +
Sbjct: 270 FYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGETYGDFD 315

[Close]

BLAST of CmaCh08G000400 vs. TAIR 10
Match: AT1G04080.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 4.3e-62
Identity = 121/188 (64.36%), Postives = 142/188 (75.53%), Query Frame = 0


Query: 263 RLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWGRLAMIYTRILENPNQQLDRYFNSFKE 322
           RLFER L YVGTD+LS PLWDKYIEYEY QQ+W R+A+IYTRILENP Q LDRYF+SFKE
Sbjct: 6   RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 65

Query: 323 LAANRPLSELKSSEE---AVLDVQSEAGDQVNGEEGH---------PDATEPSSKTVSAG 382
           LA  RPLSEL+S+EE   A + V  +A +    E G            +TE S K  SA 
Sbjct: 66  LAETRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKLESAS 125

Query: 383 LTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELDNWHSYLDFI 439
            TE EEL+KY+ IRE +Y K+KEF+SKIIG+E AIRRPYFHVRPLNVAEL+NWH+YLDFI
Sbjct: 126 STEPEELKKYVGIREAMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELENWHNYLDFI 185

[Close]

BLAST of CmaCh08G000400 vs. TAIR 10
Match: AT1G17760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-07
Identity = 42/176 (23.86%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 177 LIEETEKVAE----DNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYER 236
           ++EE E +A+      I +   +Y+  L+ +P    +WK+Y + +    + D   +++ R
Sbjct: 6   IVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSR 65

Query: 237 AVHGVTYSVDIWLHYCIFTLSTY------GDPETIRRLFERGLAYVGTDYLSFPLWDKYI 296
            +      V +W  Y  F    Y      G  ET  + FE  L Y+GTD  S P+W +YI
Sbjct: 66  CLL-TCLQVPLWQCYIRFIRKVYDKKGAEGQEET-TKAFEFMLNYIGTDIASGPIWTEYI 125

Query: 297 EYEYT------QQEWGR---LAMIYTRILENPNQQLDRYFNSFK--ELAANRPLSE 332
            +  +       ++  R   L  +Y R +  P   +++ +  ++  E   NR L++
Sbjct: 126 AFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAK 179

The following BLAST results are available for this feature:

BLAST of CmaCh08G000400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4KLU2	2.7e-45	35.64	Pre-mRNA-processing factor 39 OS=Xenopus laevis OX=8355 GN=prpf39 PE=2 SV=1	[more]
O74970	4.6e-45	34.81	Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
Q86UA1	1.4e-41	32.15	Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRPF39 PE=1 SV=3	[more]
Q1JPZ7	2.4e-41	33.23	Pre-mRNA-processing factor 39 OS=Danio rerio OX=7955 GN=prpf39 PE=2 SV=2	[more]
Q8K2Z2	1.7e-39	33.24	Pre-mRNA-processing factor 39 OS=Mus musculus OX=10090 GN=Prpf39 PE=1 SV=3	[more]

BLAST of CmaCh08G000400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04080.1	2.9e-127	62.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04080.3	2.9e-127	62.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G46400.1	2.7e-64	42.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04080.2	4.3e-62	64.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G17760.1	1.0e-07	23.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 256..291 e-value: 2.4E-6 score: 37.1 coord: 187..219 e-value: 8.7E-4 score: 28.6 coord: 221..253 e-value: 0.21 score: 20.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 162..331 e-value: 1.3E-42 score: 147.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 164..440
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 343..368
None	No IPR available	PANTHER	PTHR17204:SF5	PRE-MRNA-PROCESSING FACTOR 39	coord: 102..443
None	No IPR available	PANTHER	PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	coord: 102..443

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000400.1	CmaCh08G000400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000395	mRNA 5'-splice site recognition
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
molecular_function	GO:0005515	protein binding