CmaCh07G011090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G011090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 6010937 .. 6011297 (+)
RNA-Seq ExpressionCmaCh07G011090
SyntenyCmaCh07G011090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGCTAAAATTCCAGCACTAAGAAGGCAGATTGCCCCAGAAGCAGTACATGTAGCGGACCGACCCATCACAAACTGTGGGCTGCAGGTTTGAGCCATCATCCAATATTTTATCATACCCTCTTTGAGTCTTTCAACCGCTATTTTGCCTTCTTTTTCATTTGCTTTGCACTCTTTTGATGCTAATTCATGTCGTAGGCTATACTTCATTTCCAGGTAGCTTTTAGTTGATGGAACAACTAAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACCTGTTCTTTCATATAAACATAGATCACTCCAGTTCCCATCTCCATACAGACGTTTATGA

mRNA sequence

ATGGCCTCTGCTAAAATTCCAGCACTAAGAAGGCAGATTGCCCCAGAAGCAGTACATGTAGCGGACCGACCCATCACAAACTGTGGGCTGCAGTTGATGGAACAACTAAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACCTGTTCTTTCATATAAACATAGATCACTCCAGTTCCCATCTCCATACAGACGTTTATGA

Coding sequence (CDS)

ATGGCCTCTGCTAAAATTCCAGCACTAAGAAGGCAGATTGCCCCAGAAGCAGTACATGTAGCGGACCGACCCATCACAAACTGTGGGCTGCAGTTGATGGAACAACTAAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACCTGTTCTTTCATATAAACATAGATCACTCCAGTTCCCATCTCCATACAGACGTTTATGA

Protein sequence

MASAKIPALRRQIAPEAVHVADRPITNCGLQLMEQLKQKNSRCQAKQASRLEWKPVLSYKHRSLQFPSPYRRL
Homology
[Close]
BLAST of CmaCh07G011090 vs. NCBI nr
Match: KAG7027440.1 (hypothetical protein SDJN02_11453, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MASAKIPALRRQIAPEAVHVADRPITNCGLQL 33
          MASAKIPALRRQIAPEAVHVADRPITNCGLQL
Sbjct: 1  MASAKIPALRRQIAPEAVHVADRPITNCGLQL 32

[Close]
BLAST of CmaCh07G011090 vs. NCBI nr
Match: CBI31916.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 2   ASAKIPALRRQIAPEAVHVADRPITNCGLQLMEQLKQKNSRCQAKQA 49
           AS KI AL+RQ AP AVHV +RP TN G QL EQLKQ+NSR   KQA
Sbjct: 59  ASTKIAALKRQSAPAAVHVTERPFTNWGQQL-EQLKQRNSRSVTKQA 104

The following BLAST results are available for this feature:
BLAST of CmaCh07G011090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G011090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G011090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027440.11.3e-07100.00hypothetical protein SDJN02_11453, partial [Cucurbita argyrosperma subsp. argyro... [more]
CBI31916.31.0e-0468.09unnamed protein product, partial [Vitis vinifera][more]
BLAST of CmaCh07G011090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G011090.1CmaCh07G011090.1mRNA