CmaCh07G010680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G010680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 5704207 .. 5707379 (+)
RNA-Seq ExpressionCmaCh07G010680
SyntenyCmaCh07G010680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGTTCTTCTTCCTCAACATTTCGATCGACAGTATGTTATAACCCTCTTCTTCTTCTTCCCCATGCCGTTCGCTTAGCATTTTGGAAGATCCGTTGGAGGAGGAATGATCGATTGGTTTGGTCCATTGCCATTTTCCACCAAGAAAGCCATCTTTAATCCCCATGTTGTGTGCACTTCCAAATGGCAATGCATAAACCAAACTCCTACACCAACACAAAGATTTGCAATTAGGAAGGATATTTGTGAGTGATTTTCTCTAATCTTTGATGATGTGTTCGATTTAGTGATGGAACACTGTAATTTAACCAAGTTTTTTTTTACCTGGATTATCAGCTCTGAATCTGATGGCTATCCATCCACCGGAAGGCACTCCGACGGTGTTTCTCTCAACAGGATCGACGAGATTGAATGATTTGGGGTCATTTTTAGGGTCGTAGTTACCGATTCCGCTTCCAACGATGAAGAAATTAAACCCATGGAGATGAACAGGGTGGTTTTCTGGGACGATGATCCCGGTGTCCTGTAAAACAAGTTCCACCGTCGAGTTGTATTTCAGTTTATAAAGCTTTGTCCCTCTCGTTGTCTGTAAATTCGATGGTCCACTGCCTGTGTAGTTGAAAACATGAGGTGGGGTAGCCGGGAAATCAGTTGTGAAAACTCCATTGATGTTGAAATAATGAGCTTGAAGTAAGGCTGTGGTTGGCATTACGAATGTGACATTGTTAATGCTGGCCACTGCCCGGCTTCCATTCCCAGCTTTGCAGGTGGGACAAGGGTTGATCCCAAGGCCAACTGTGAAGAGAAGGTTATGATCAATGGTCAATGGAACTCTTGCAGGGTAGGTGTTTGAATTAATGCTTCTGAGAGAGTTTAAGAAGTTGTTGGCGACTGATGTTGAGTTTTGAGGAGGTGGGGCAGTTAACGTCGTTGTGGTTGTTGCGAGCGTGCCGGAGTAATGTAGTGTGGCTGTGGCAGTGTTGTTGTCGACCGCGATCGGAGCGGTCATGAAAGGGGAGGCGGCAACTAAGTACTTGCCAGAGCTTTGATCAGCAGTGATGAGGGCATTGGTGGTTTGGCCTGGTGCAATCAAAATTGTGTCTGTTTGGAATGGTTTCACGTAGGTAGCATCAACCTCCACAACTGTGAGTTTGTGCCCAGCAATCTTGAAGAACAGCTCCTCATTGAGTGCAGCATTGATTATACGCAGTAAGTAAGTATTACCATTCTTGACAGGCAATGTGAATCCCCCTGATAAGAAACGTCGATGTTAGATTCGAGTGCACAGCGCCATAGTCTTTAAGTTTCTGATATGCATAATGGTCGTTTGTACCTTGTGTAGAACAGCTCGAGAGGGGTCCTGAATGACCATTTATTGTGTGAGCATCTGATACATTTGGAGCTAATCCTGATTTAAGAGCTTCATTGATCACGGTTTCGGTGTCGGATTTCCACCATTCAGCTGCAGAAGCAGGATCATTTTTTAGAATCAATTCAGTCAGGTCTAAGTGAAGCTAAAAAGGATGGCAAGGGGACAGATCGTTTACTTTCAAGCGTGCTCACCTAATACAATGACAACTTCTTTGTGAGGAGCTGGGAATGGATAGGGAACGCCAAGCTTAGGCAATATGACCAAAGCACCATGGACAGTTGCCCTCAGCCACAGGATATGTGCGTGCCAAAAAAGGGTGCCTCTTTGGCCAGTAACAGTGAAGTTATATAAATAGCTTTGCCCTGATGGGATTGGACACTGCGTAACGTATGCCGGTCCATCTGCCCAACCTGTTCGGAGCTGCCGAATTCCATGCCTGACCAGAACAAGAAAGTGAGGTAGCATCATTCATTACTTTCCTTTCCTTCAAATATTACTACAAATCATTCGTTCTTAGGCTTCATAAGAAAGGTGAAGTAGAAGTTTTGTAGGCAGGCTTACCAATGAATAGAAAGGTTGTATTGAACATGGTTAACAACCTTAATGAGTACTGTGTCATCTTCCCTAGCGTAGATGGTCGGCCCTGGAAACTTTCCGTTAACCGTGACGATTTGCTTACTCGAACATAGTTTTGTAGTATTTTTCAAAACCACCTGCCATTAACATATAGAATAGGAATATGAATCCCTAAAAGGTCTGATTTGTCTTGGTTAAGAACACTGATGGGTCAGCTAAAATGAAAGATCAGAAAAGAAGTTTGCCTTAAAAACAAAACACATTATCGAGTACAAAAGTGAACAAGAAGAGAAAAAAAAAACAAAGCTGGGAATTGTGAGTGTTAGAAAGTCTTGCCATCTGCTTGTGGTTGGTATAAAAGATTCAGTACTTACATCGAATGTGTAGCGTCGAACTCGGCATTCGACAAAAGCTGGGAAAATACAGGCCACGAGAACCAGAACTCGAATTATTAAACCCATTTACCCCTCTCTTTCTCTCCCTCTACTGGATACAAGCCTTGTTTAGATGTGGGTAATGAATAATAGGAAAGCCTCCCTTATATAAAGCTTAGCTGAAATGTCGTTTTTGCATGGTTGGTGAATGATAGAGCTGTTTTGCTGTTTTCAAGTAAGAAGAGGACTAATCTCTCTAGTTCTGGAAGCCAAGAAACTCTCCAACCAAACCAAACCAAACCAAACCAACGGTAACAGCTCAAGCCTACCGCTAGCAGATATTATCTTCTTTGAGCTATTTCTTTTGAGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTGGGGAGATGTTTCTACACTCTTATGAAAAAATGCTTCGTTCTCCTCCCCAACTGATGTGGGATCTCACACCAACTCATATCTGAACAATGAGGTATTAGGTGCTGGTTGTTTGAATTATATGGAATGACTCTTATTCTAATGATCGAGATAGCGTATGTTCTTTCGCTCTCAAGAAGACCTGACTCGAGCGTTCTTCTCGAGAACGGTCTTCTAATACATGAAAGATCTTGATTCAAAACTCGACTTAGCTTTAGAGATTTGAAAAAAAAGGTATTTATTTGTCACTTTCAGGTTTCTGGTGAAGAGGAAAGGGCAGAGAAAGTCGAGAGTTGAAGGAAGGTGGCATTCTCAAATCTCAAGCAAGTAAGATGAAAATGGGTAGTTTGCAAAAAAAGATAAAATAAAATAAAATAAATGGCATATATATAATATTATTTTATTGTTG

mRNA sequence

ATGGCTGTGTTCTTCTTCCTCAACATTTCGATCGACACTCTGAATCTGATGGCTATCCATCCACCGGAAGGCACTCCGACGGTGTTTCTCTCAACAGGATCGACGAGATTGAATGATTTGGGGGTCGTAGTTACCGATTCCGCTTCCAACGATGAAGAAATTAAACCCATGGAGATGAACAGGGTGGTTTTCTGGGACGATGATCCCGGCTGTGGTTGGCATTACGAATGTGACATTGTTAATGCTGGCCACTGCCCGGCTTCCATTCCCAGCTTTGCAGGTGGGACAAGGGTTGATCCCAAGGCCAACTGTGAAGAGAAGGTTATGATCAATGGTCAATGGAACTCTTGCAGGGTAGGTAGCATCAACCTCCACAACTGTGAGTTTGTGCCCAGCAATCTTGAAGAACAGCTCCTCATTGAGTGCAGCATTGATTATACGCAGTTTCTGGTGAAGAGGAAAGGGCAGAGAAAGTCGAGAGTTGAAGGAAGGTGGCATTCTCAAATCTCAAGCAAGTAAGATGAAAATGGGTAGTTTGCAAAAAAAGATAAAATAAAATAAAATAAATGGCATATATATAATATTATTTTATTGTTG

Coding sequence (CDS)

ATGGCTGTGTTCTTCTTCCTCAACATTTCGATCGACACTCTGAATCTGATGGCTATCCATCCACCGGAAGGCACTCCGACGGTGTTTCTCTCAACAGGATCGACGAGATTGAATGATTTGGGGGTCGTAGTTACCGATTCCGCTTCCAACGATGAAGAAATTAAACCCATGGAGATGAACAGGGTGGTTTTCTGGGACGATGATCCCGGCTGTGGTTGGCATTACGAATGTGACATTGTTAATGCTGGCCACTGCCCGGCTTCCATTCCCAGCTTTGCAGGTGGGACAAGGGTTGATCCCAAGGCCAACTGTGAAGAGAAGGTTATGATCAATGGTCAATGGAACTCTTGCAGGGTAGGTAGCATCAACCTCCACAACTGTGAGTTTGTGCCCAGCAATCTTGAAGAACAGCTCCTCATTGAGTGCAGCATTGATTATACGCAGTTTCTGGTGAAGAGGAAAGGGCAGAGAAAGTCGAGAGTTGAAGGAAGGTGGCATTCTCAAATCTCAAGCAAGTAA

Protein sequence

MAVFFFLNISIDTLNLMAIHPPEGTPTVFLSTGSTRLNDLGVVVTDSASNDEEIKPMEMNRVVFWDDDPGCGWHYECDIVNAGHCPASIPSFAGGTRVDPKANCEEKVMINGQWNSCRVGSINLHNCEFVPSNLEEQLLIECSIDYTQFLVKRKGQRKSRVEGRWHSQISSK
Homology
[Close]
BLAST of CmaCh07G010680 vs. ExPASy TrEMBL
Match: A0A2P5CRN2 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_275550 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 41/139 (29.50%), Postives = 56/139 (40.29%), Query Frame = 0 

Query: 41  GVVVTDSASNDEEIKPMEMNRVVFWDDDP------------------------------- 100
           G++V +S ++ EEI+PM+MNRVV   D P                               
Sbjct: 31  GIIVPESPTHHEEIEPMKMNRVVLGRDKPSVLQNQLHRRVVRQPVNLGPVHRRHIRRRSS 90

Query: 101 ----------------------------GCGWHYECDIVNAGHCPASIPSFAGGTRVDPK 121
                                       G   H E D+V+AGH PASI      T V P+
Sbjct: 91  GEVEHGRRVPGKVSGEDPADVEEMGLEQGRSGHNEGDVVDAGHDPASISGSTSRTWVYPE 150

[Close]
BLAST of CmaCh07G010680 vs. NCBI nr
Match: KAG7027412.1 (hypothetical protein SDJN02_11424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 114/118 (96.61%), Postives = 114/118 (96.61%), Query Frame = 0 

Query: 1   MAVFFFLNISIDTLNLMAIHPPEGTPTVFLSTGSTRLNDLGVVVTDSASNDEEIKPMEMN 60
           MAVFFFLN  IDTLNLMAIHPPEGTPTVFLSTGS RLNDLGVVVTDSASNDEEIK MEMN
Sbjct: 1   MAVFFFLNFWIDTLNLMAIHPPEGTPTVFLSTGSMRLNDLGVVVTDSASNDEEIKSMEMN 60

Query: 61  RVVFWDDDPGCGWHYECDIVNAGHCPASIPSFAGGTRVDPKANCEEKVMINGQWNSCR 119
           RVVFWDDDPGCGWHYECDIVNAGHCPASIPSFAGGTRVDPKANCEEKVMINGQWNSCR
Sbjct: 61  RVVFWDDDPGCGWHYECDIVNAGHCPASIPSFAGGTRVDPKANCEEKVMINGQWNSCR 118

[Close]
BLAST of CmaCh07G010680 vs. NCBI nr
Match: PON63693.1 (hypothetical protein TorRG33x02_275550, partial [Trema orientale])

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-06
Identity = 41/139 (29.50%), Postives = 56/139 (40.29%), Query Frame = 0 

Query: 41  GVVVTDSASNDEEIKPMEMNRVVFWDDDP------------------------------- 100
           G++V +S ++ EEI+PM+MNRVV   D P                               
Sbjct: 31  GIIVPESPTHHEEIEPMKMNRVVLGRDKPSVLQNQLHRRVVRQPVNLGPVHRRHIRRRSS 90

Query: 101 ----------------------------GCGWHYECDIVNAGHCPASIPSFAGGTRVDPK 121
                                       G   H E D+V+AGH PASI      T V P+
Sbjct: 91  GEVEHGRRVPGKVSGEDPADVEEMGLEQGRSGHNEGDVVDAGHDPASISGSTSRTWVYPE 150

The following BLAST results are available for this feature:
BLAST of CmaCh07G010680 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G010680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5CRN22.8e-0629.50Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_275... [more]
BLAST of CmaCh07G010680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027412.11.7e-6196.61hypothetical protein SDJN02_11424, partial [Cucurbita argyrosperma subsp. argyro... [more]
PON63693.15.8e-0629.50hypothetical protein TorRG33x02_275550, partial [Trema orientale][more]
BLAST of CmaCh07G010680 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G010680.1CmaCh07G010680.1mRNA