CmaCh07G009970 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G009970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 5138634 .. 5139522 (+)
RNA-Seq ExpressionCmaCh07G009970
SyntenyCmaCh07G009970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGGGACACGTGTACGGTGGATGGCGTCGGACGGGCCTCTATAAATCGCGGTGAAACGAGTGGTTTGAAATCAGCCAGCTTCAAGTTTCCGATTAAAATCCAAACATTTGAGTTCCGTTCGTCGTTTAAGAAGAAAGAAGAAAGAAGAAAGATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCGTACGTATTTTCTTCTTCTCTTTACCAAAATTTTTCCGGGAAAGCGGCAGGGGCTTGTTTGTTTCTCGGGAATTTGATTTTCTCGAGAAAATTCTGACTCTGTTTTGATTTATTTTGTGTGTAGATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTACAGCCACCATTCGTGTTCTTCGAAGTTTTTAATATAAGATTTTGATCTTTTATTTGTTCGTTTTATGGATTATATTCGTGTTTTTTTGTAAAGCAGGAACTTGTCGGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCGTGCAACTGCTAAAGAAAGGCGTCGGAGCTTTCGATATGAAAGGGCATAATTTAGAGCAAGGGTTGGGTTTGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGGTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTTTGGGAATAACCTCAAACATTTATTGTTAATCAAATGATAATCCATTTTAGATATAATAACTATCTTGTAATTGTTACAAATTATTTGCTTAAAAAAATATGGATGAGAAAAGAATTATAATTTAGTTATGAA

mRNA sequence

ATGCGTGGGGACACGTGTACGGTGGATGGCGTCGGACGGGCCTCTATAAATCGCGGTGAAACGAGTGGTTTGAAATCAGCCAGCTTCAAGTTTCCGATTAAAATCCAAACATTTGAGTTCCGTTCGTCGTTTAAGAAGAAAGAAGAAAGAAGAAAGATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTACAGCCACCATTCGTGAACTTGTCGGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCGTGCAACTGCTAAAGAAAGGCGTCGGAGCTTTCGATATGAAAGGGCATAATTTAGAGCAAGGGTTGGGTTTGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGGTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTTTGGGAATAACCTCAAACATTTATTGTTAATCAAATGATAATCCATTTTAGATATAATAACTATCTTGTAATTGTTACAAATTATTTGCTTAAAAAAATATGGATGAGAAAAGAATTATAATTTAGTTATGAA

Coding sequence (CDS)

ATGCGTGGGGACACGTGTACGGTGGATGGCGTCGGACGGGCCTCTATAAATCGCGGTGAAACGAGTGGTTTGAAATCAGCCAGCTTCAAGTTTCCGATTAAAATCCAAACATTTGAGTTCCGTTCGTCGTTTAAGAAGAAAGAAGAAAGAAGAAAGATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTACAGCCACCATTCGTGAACTTGTCGGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCGTGCAACTGCTAAAGAAAGGCGTCGGAGCTTTCGATATGAAAGGGCATAATTTAGAGCAAGGGTTGGGTTTGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAA

Protein sequence

MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFTATIRELVGRLQMWSELQLRPVQLLKKGVGAFDMKGHNLEQGLGLVLCVCVCKVFDKMPLTNTSKK
Homology
[Close]
BLAST of CmaCh07G009970 vs. ExPASy TrEMBL
Match: A0A6J1HPV6 (uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.2e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60
          MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS
Sbjct: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60

Query: 61 ACNCDLNNCSCKHDAAPIMKQ 82
          ACNCDLNNCSCKHDAAPIMKQ
Sbjct: 61 ACNCDLNNCSCKHDAAPIMKQ 81

[Close]
BLAST of CmaCh07G009970 vs. ExPASy TrEMBL
Match: A0A6J1HS62 (uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.3e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60
          MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS
Sbjct: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60

Query: 61 ACNCDLNNCSCKHDAAPIMK 81
          ACNCDLNNCSCKHDAAPIMK
Sbjct: 61 ACNCDLNNCSCKHDAAPIMK 80

[Close]
BLAST of CmaCh07G009970 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60
          MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS
Sbjct: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60

Query: 61 ACNCDLNNCSCKHDAAPIMKQ 82
          ACNCDLNNCSCKHDAAPIMKQ
Sbjct: 61 ACNCDLNNCSCKHDAAPIMKQ 81

[Close]
BLAST of CmaCh07G009970 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60
          MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS
Sbjct: 1  MRGDTCTVDGVGRASINRGETSGLKSASFKFPIKIQTFEFRSSFKKKEERRKMPKCGCGS 60

Query: 61 ACNCDLNNCSCKHDAAPIMK 81
          ACNCDLNNCSCKHDAAPIMK
Sbjct: 61 ACNCDLNNCSCKHDAAPIMK 80

[Close]
BLAST of CmaCh07G009970 vs. NCBI nr
Match: KAG7027334.1 (hypothetical protein SDJN02_11346 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 9.5e-29
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 53  MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFTATIRELVGRLQMWSELQLRPVQLLKKG 112
           MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEF A IRELV RLQMWSELQLRP+QL  KG
Sbjct: 1   MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRELVRRLQMWSELQLRPMQLQMKG 60

Query: 113 VGAFDMKGHNLE 125
           VG FDMK H LE
Sbjct: 61  VGVFDMKRHKLE 72

The following BLAST results are available for this feature:
BLAST of CmaCh07G009970 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G009970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HPV62.2e-39100.00uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS628.3e-39100.00uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmaCh07G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966636.14.5e-39100.00uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima][more]
XP_022966635.11.7e-38100.00uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima][more]
KAG7027334.19.5e-2987.50hypothetical protein SDJN02_11346 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmaCh07G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G009970.1CmaCh07G009970.1mRNA