CmaCh07G009620 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G009620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDiaminopimelate epimerase
LocationCma_Chr07: 4651466 .. 4655730 (+)
RNA-Seq ExpressionCmaCh07G009620
SyntenyCmaCh07G009620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACACTCCGGTTTGTCCGTTGCTTTGCTTCGGCTTTACAGCCATGGCCATGGCCGCCTCCATTTCTCTTCCACGTACCTCTCCATCTCCACGCTCTCTCGCCTCAATTCCTTCTTTCCGATCTTCTTTTTGCTCCACTCTTCAACTGGATTCTATAGGAAAGAATTCTGCTCGGAGAAGAAGCCCAAGGCTCTCTGTATCCGTGACTTCCGCTGGCCTTCATTTTACAGAGAAAGCGTCGTCGTTGTCTTTTCTGGAACGGAGAGAGAGTGGCTTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTAATGATTCTCTGAGTTTACTGTTAGACATACTTTTTTGTTTTTATCCTGAAATTGGCAGTAGATGCATGTTGTTATCCATTTTATCTGTTGGAAATCGGAAATCGGAACTTGGTATCTGCCTCCAAGTGATTTTAATCATGGAAAAAGATATGGAATTTTAATAAGAAACTAATTGGCAAATTTGTTCGATTGGAAATAGTTGAATTCACTCTCGGCTAATGAATCTGCATTTGGTTCTTAATCTGATATTGATTGGAAGTGAGCTTGAATAGGTTGATAATAGGGACTCCTCAGAGCCTAGGATCACTCCGGAGCAAGCTGTGAAGTTATGTGATCGGAACTTTGGGATCGGTGCTGACGGAGTTATTTTTGCTATGCCAGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGGTAGTTGCGTTTTTCAGAAATAATTGTCTGCTATTGTTGTATTCCTATCAATTACGTCTGAGTCTGAGTTTTTTTTCCCGCTTATATCATATAGATGTGCGGTAATGGAGTAAGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTACAGGGAAGGCATAGGTATGGTTTTTCTATTGTTTTATCTTGCTGAATTACAACGTTGGATTGTCCTTTCAAGACACGTTATAATTTTATCTTCCAGCATTAATATTTCAAAGATGAACGTTTGCCTTATATTCCTGATTCTGGGTTTTGAAACCTATTTTCTTTTGAAGTTGATCAACTAATTAAATTATGATAGCTTAGATTTTTTATTCATGTATATTTATGTATTAGAATTCTGATGGAGCTCACAATTTTCTGTTCATACTCTCGCAGTTTCACTGTTCATACTGGAGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTATAGTTTTTTTATGTTCATTTCATTCGGGTATGCTAATCTGGCTTAAGAATAGTTTATTTTACTCGTTTGATGAAAAATGTTCTAATTACAATCAACATCTGTTTTAATTTAGATGGTTTAGGCGCATCTTCACCATTTTTTTCATTGTGAAATGCATCTGTGCTTCTACGATTCAGTGCTCTTTTTTTATTTTTTGGCAAATGTGGTCTAAGTTTTTTTCGGTTCAGTGTCGATCCTAACGGACATGTAAATTCAGGTAAAAGTAGACATGGGTGAACCAATTCTTAAAGCATCAGATGTGCCTACTCGATTGGCACCAAATGCAGATGAATCTGTTGTAAAGTCAGACATAGAAGTAGATGGAGTAACATGGAGTGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGACCAGGTATTTATATGGAAGTACATTTTGCGACATTCCATTCAATCGTCTAAAGTTTCTTAAAGTTTTCAAGGTGGATTACTATGACTTGCCCATTTTTTGTTTTTCTACTCTCTTACTTAAATGTAATCACCTAACAAGTTATATCTCGTGTACATGGTGTATGTTGAGGATGGTTGGGAGATGAGTTCTACATTGGCTAATTAAGGGGTTGATCATAGGTTTACAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGAAAAACAAAACCATGAGAGCTTATGCTCAAAGTGGATAATATAATACTATTGTAGAGATCCATGGTTCCTAACAGTGTAGTGGATTATATACAATAGGCTACACTCTAACATTAAGTAAGAATTTCTTTGAGAACTTTGCAGGATCCATGAGTACATAAATTGCATTTGTCATAATGTAGTTGATGGATCGAGATGTCTTCACATTGTAATGTTAACTGTTAGAGCGTTTGTGAACAAAAGAATACAATTAAATGAAGAAACAATACTAAGCCATGTGGAAAACTCTGGTGATGGCTAAGCTTCCTCGACATTTAAATCTTTTTCTTTCTTCCTTTGACCTAAAATTGCTTACAGCAGTTTAAACTATGTTCTGAGGGTAATGCAACTTTGTAGACTTGAGTATAGTCGTTTTGTTGGGTACAACTTTACCGTTCATTTACTATTTGTGCTTATTTTAGCATGGTCATGAACAGAATCTGCAGGTGGATGAAATAAATTTAGCTGCAATTGGTCCAAAGTTTGAGCATCATGAGATGTTTCCAGCACGAACAAATACAGGTTGGTTTCTTGACAAGTTTGGATTTTCAGCTTTTTCTGGTTGAGATATAAGCAAACGTGTTTCTTTTTTCTAACCATTTAAACGGTCTTCCCTTCCCTTTCTATGCACTTTTATGTTCACTGAGTTACACTGCTCATACTGCTTTTCTTCATGTCCACGACAGAATTTGTGCAAGTCTTCTCCAAGTCACACCTTAAAATGCGTGTTTGGGAGCGTGGGGCAGGTTCGGAATTCAACATAATTTAAGACAAATTAAAGTTGTAAGCATATAAATAGTGAATCTCACTTCATAACAAAACCTACGGGCTATTCTTCTCTGTGACACTACAGGCGCAACACTTGCTTGTGGAACCGGAGCCTGTGCAGTTGTCGTTGCAGCAGTTCTTGAGGGCCGTGCTGGGCGGGTAAGCAGACCATATTTAGTTTTCAAATACACCAGCGATAATATAATATAGTTTCATCCAAAAAAAAAAAAAAAAAAAAAATCTCATGTACAGTCCAAGTCCACCGCTAGCAGATATTGTCATTTTTGGGGTTTTCCTTCGGACTTCCCCTCAAGGTTTTAAAATGCATCTGCTAGAGAGGTTTCGACACCCTTATAAAGAGTGTCCTGTTCCCCTCTCCAACCGATGTGGAATCTCACAATCTACCCTCGTTAGGGACCAGCGTCCTCGCTGGCACTCGTTTTACTCTCCAATCGATATGGGACCCTCCAATCCACCCTCTTTGGGGCCTAGAGTCCTCGCTGGCACACCGCCTAGTGTCCACCCCCTTCGGGGTTCAGCCTCCTTGTTGGCACATCGCCTGATGTCTAGCTCTAATACAATTTGTAATATCCCAAGCCCACCGCTAGCTAGATATTGTCTTTTTTGGGCTTTCCCTTCCGGGCTTCCTATCAAGGCTTTAAAATGCATTTGCTAGGGAGAGATTTCCACATCTGTTTTGTTCCCCTTTCCAACCGATGTGGAATCTCACATCACAACTTGGTTATCTAGATAGAAAAAACAAAAGGTCATCAAATTTCAATCTTCTCGTCACTTTAAATTTCCTAACATTGGATTCAAATATCTCGACGCAGAATTGCACCGTTGATCTACCTGGAGGACCATTACAGATAGGGTGGAATGAGCAAAACAACCACGTTTACATGACTGGACCAGCGGAAGTAGCATTCTATGGATCGGTTCCCCTACAATAAAAATAAACTTTTGCTGGTTCTTGATGCCTATCACCGCCACAAAGTATGAGCACAAAGCAATCGTCAAATTTTGGCTCCTTCAGCTCATCTCTTGCGATGATTGATAGGTACCATTCAACCAAAGTCTGCACACATTATCTGTTCATTATGAATTCTAGCCGATTGTTAGGTGGAGAGGGAAGATTAATGAAATTAGGCTCTTCTAACTTGATTGAAAGCTATATTGTTTGATTAGTCTCTTTGAATTTAACATATTCCTAGTCTACTATTTGCTCTGTGTTCGAATGCAAATAATTTCAGAGTTCTACGGTAGCCTTAAGAATATGTCAATAACGTTACAAACTATGTTCACATTGACTACTCAATTATTATGTTGAGCATGGGAAGATTCAAAACTGGCTTGGCCTCTTAGTTGAGGGGTATGACAATTACCGTTGAATCATTAATTAGTTAAAACGTATATTTTAGTGTCGAATCTTCCCTCGGCAAATAGTTGTATTGTATCTGTGTATCGTTTTAGATTGATTGTGTTTTTCAAAGATGGATCAACTAATTCCTCAG

mRNA sequence

CAACACTCCGGTTTGTCCGTTGCTTTGCTTCGGCTTTACAGCCATGGCCATGGCCGCCTCCATTTCTCTTCCACGTACCTCTCCATCTCCACGCTCTCTCGCCTCAATTCCTTCTTTCCGATCTTCTTTTTGCTCCACTCTTCAACTGGATTCTATAGGAAAGAATTCTGCTCGGAGAAGAAGCCCAAGGCTCTCTGTATCCGTGACTTCCGCTGGCCTTCATTTTACAGAGAAAGCGTCGTCGTTGTCTTTTCTGGAACGGAGAGAGAGTGGCTTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCCTCAGAGCCTAGGATCACTCCGGAGCAAGCTGTGAAGTTATGTGATCGGAACTTTGGGATCGGTGCTGACGGAGTTATTTTTGCTATGCCAGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGATGTGCGGTAATGGAGTAAGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTACAGGGAAGGCATAGTTTCACTGTTCATACTGGAGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGTGAACCAATTCTTAAAGCATCAGATGTGCCTACTCGATTGGCACCAAATGCAGATGAATCTGTTGTAAAGTCAGACATAGAAGTAGATGGAGTAACATGGAGTGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGACCAGAATCTGCAGGTGGATGAAATAAATTTAGCTGCAATTGGTCCAAAGTTTGAGCATCATGAGATGTTTCCAGCACGAACAAATACAGAATTTGTGCAAGTCTTCTCCAAGTCACACCTTAAAATGCGTGTTTGGGAGCGTGGGGCAGGCGCAACACTTGCTTGTGGAACCGGAGCCTGTGCAGTTGTCGTTGCAGCAGTTCTTGAGGGCCGTGCTGGGCGGAATTGCACCGTTGATCTACCTGGAGGACCATTACAGATAGGGTGGAATGAGCAAAACAACCACGTTTACATGACTGGACCAGCGGAAGTAGCATTCTATGGATCGGTTCCCCTACAATAAAAATAAACTTTTGCTGGTTCTTGATGCCTATCACCGCCACAAAGTATGAGCACAAAGCAATCGTCAAATTTTGGCTCCTTCAGCTCATCTCTTGCGATGATTGATAGGTACCATTCAACCAAAGTCTGCACACATTATCTGTTCATTATGAATTCTAGCCGATTGTTAGGTGGAGAGGGAAGATTAATGAAATTAGGCTCTTCTAACTTGATTGAAAGCTATATTGTTTGATTAGTCTCTTTGAATTTAACATATTCCTAGTCTACTATTTGCTCTGTGTTCGAATGCAAATAATTTCAGAGTTCTACGGTAGCCTTAAGAATATGTCAATAACGTTACAAACTATGTTCACATTGACTACTCAATTATTATGTTGAGCATGGGAAGATTCAAAACTGGCTTGGCCTCTTAGTTGAGGGGTATGACAATTACCGTTGAATCATTAATTAGTTAAAACGTATATTTTAGTGTCGAATCTTCCCTCGGCAAATAGTTGTATTGTATCTGTGTATCGTTTTAGATTGATTGTGTTTTTCAAAGATGGATCAACTAATTCCTCAG

Coding sequence (CDS)

ATGGCCATGGCCGCCTCCATTTCTCTTCCACGTACCTCTCCATCTCCACGCTCTCTCGCCTCAATTCCTTCTTTCCGATCTTCTTTTTGCTCCACTCTTCAACTGGATTCTATAGGAAAGAATTCTGCTCGGAGAAGAAGCCCAAGGCTCTCTGTATCCGTGACTTCCGCTGGCCTTCATTTTACAGAGAAAGCGTCGTCGTTGTCTTTTCTGGAACGGAGAGAGAGTGGCTTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCCTCAGAGCCTAGGATCACTCCGGAGCAAGCTGTGAAGTTATGTGATCGGAACTTTGGGATCGGTGCTGACGGAGTTATTTTTGCTATGCCAGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGATGTGCGGTAATGGAGTAAGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTACAGGGAAGGCATAGTTTCACTGTTCATACTGGAGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGTGAACCAATTCTTAAAGCATCAGATGTGCCTACTCGATTGGCACCAAATGCAGATGAATCTGTTGTAAAGTCAGACATAGAAGTAGATGGAGTAACATGGAGTGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGACCAGAATCTGCAGGTGGATGAAATAAATTTAGCTGCAATTGGTCCAAAGTTTGAGCATCATGAGATGTTTCCAGCACGAACAAATACAGAATTTGTGCAAGTCTTCTCCAAGTCACACCTTAAAATGCGTGTTTGGGAGCGTGGGGCAGGCGCAACACTTGCTTGTGGAACCGGAGCCTGTGCAGTTGTCGTTGCAGCAGTTCTTGAGGGCCGTGCTGGGCGGAATTGCACCGTTGATCTACCTGGAGGACCATTACAGATAGGGTGGAATGAGCAAAACAACCACGTTTACATGACTGGACCAGCGGAAGTAGCATTCTATGGATCGGTTCCCCTACAATAA

Protein sequence

MAMAASISLPRTSPSPRSLASIPSFRSSFCSTLQLDSIGKNSARRRSPRLSVSVTSAGLHFTEKASSLSFLERRESGFLHFVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPHCVTFGNKIDQNLQVDEINLAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGSVPLQ
Homology
[Close]
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match: Q9LFG2 (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF PE=1 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.3e-148
Identity = 256/360 (71.11%), Postives = 297/360 (82.50%), Query Frame = 0 

Query: 5   ASISLPRTSPSPRSLASIPSFRSSFCSTLQLDSIGKNSARRRSPRLSVSVTSAGLHFT-E 64
           A++S    +P  R +++  S      S+L      K     +SP L VS  ++    T E
Sbjct: 4   AAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEKEYC-FKSPSLRVSAAASMDAVTAE 63

Query: 65  KASSLSFLERRESGFLHFVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGADG 124
           K S  SFL+++E+G LHFVKYHGLGNDFILVDNRDSSEP+IT EQA KLCDRNFG+GADG
Sbjct: 64  KFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADG 123

Query: 125 VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLI 184
           VIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENLQG+HSFT+HTGAGLI
Sbjct: 124 VIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLI 183

Query: 185 IPELQDDGQVKVDMGEPILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPHC 244
           +PE+QDDGQVKVDMG PILKA DVPT+L+ N  E+VV++++ VDGV+W+VTCVSMGNPHC
Sbjct: 184 VPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHC 243

Query: 245 VTFGNKIDQNLQVDEINLAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGAT 304
           +TFG K   NL+VD++NL  IGPKFEHHEMFPARTNTEFV+V S+SHLKMRVWERGAGAT
Sbjct: 244 ITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGAT 303

Query: 305 LACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGSVPL 364
           LACGTGACA+VVAAVLEGRA R CTVDLPGGPL+I W +++NH+YMTGPAE  FYGS  L
Sbjct: 304 LACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 362

[Close]
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match: Q2QNF7 (Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPF PE=2 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 2.6e-139
Identity = 233/317 (73.50%), Postives = 266/317 (83.91%), Query Frame = 0 

Query: 45  RRSPRLSVSVTSAGLHFTEKASSLSFLERRES-GFLHFVKYHGLGNDFILVDNRDSSEPR 104
           R +P     V +  +     A++ +FLERRES   LHFVKY GLGNDFI+VDNRDS+ P+
Sbjct: 35  RGNPTARRCVAAMAVSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPK 94

Query: 105 ITPEQAVKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIA 164
           +TPE+A KLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIA
Sbjct: 95  VTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 154

Query: 165 ELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLAPNADESVVKSD 224
           ELENLQG HSF +HTGAGLIIPE+Q+DG+VKVDMG+PIL   D+PT+L    +E+VV++D
Sbjct: 155 ELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQAD 214

Query: 225 IEVDGVTWSVTCVSMGNPHCVTFGNKIDQNLQVDEINLAAIGPKFEHHEMFPARTNTEFV 284
           + VDG TW VTCVSMGNPHCVTFG K  + L VD++ L+ IGPKFEHHEMFPARTNTEFV
Sbjct: 215 LAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFV 274

Query: 285 QVFSKSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIGWNEQ 344
           +V S+SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRA R C VDLPGGPL+I W E 
Sbjct: 275 EVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWRED 334

Query: 345 NNHVYMTGPAEVAFYGS 361
           +NH+YMTGPAE  FYGS
Sbjct: 335 DNHIYMTGPAEAVFYGS 351

[Close]
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match: A2ZLS4 (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=DAPF PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 3.7e-138
Identity = 242/358 (67.60%), Postives = 284/358 (79.33%), Query Frame = 0 

Query: 4   AASISLPRTSPSPRSLASIPSFRSSFCSTLQLDSIGKNSARRRSPRLSVSVTSAGLHFTE 63
           AA+ ++   + +   LA+ P   +   S  +L   G  +ARR    ++VS          
Sbjct: 7   AATATIAAAAAAAAKLAATP---APAPSRRRLTLRGNPTARRCVAAMAVST-------PR 66

Query: 64  KASSLSFLERRES-GFLHFVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGAD 123
            A++ +FLERRES   LHFVKY GLGNDFI++DNRDS+ P++TPE+A KLCDRNFG+GAD
Sbjct: 67  SAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGAD 126

Query: 124 GVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGL 183
           GVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG HSF +HTGAGL
Sbjct: 127 GVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGL 186

Query: 184 IIPELQDDGQVKVDMGEPILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPH 243
           IIPE+Q+DG+VKVDMG+PIL   D+PT+L    +E+VV++D+ VDG TW VTCVSMGNPH
Sbjct: 187 IIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVTCVSMGNPH 246

Query: 244 CVTFGNKIDQNLQVDEINLAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGA 303
           CVTFG K  + L VD++ L+ IGPKFEHHEMFPARTNTEFV+V S+SHLKMRVWERGAGA
Sbjct: 247 CVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGA 306

Query: 304 TLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGS 361
           TLACGTGACAVVVAAVLEGRA R C VDLPGGPL+I W E +NH+YMTGPAE  FYGS
Sbjct: 307 TLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354

[Close]
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match: P74667 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=dapF PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-105
Identity = 187/285 (65.61%), Postives = 219/285 (76.84%), Query Frame = 0 

Query: 79  LHFVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
           L F KYHGLGNDFILVDNR S+EP +TP+QA +LCDR+FGIGADGVIFA+PG  GTDYTM
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62

Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMG 198
           RIFNSDGSEPEMCGNG+RC A+F+A+LE ++ + ++ +HT AG+I P+L  DGQVKVDMG
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMG 122

Query: 199 EPILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPHCVTFGNKIDQNLQVDE 258
           EP L A  +PT LAP A E VV   + V G TW+VTCVSMGNPHC+TF   +D    VD 
Sbjct: 123 EPQLLAELIPTTLAP-AGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTF---VD---DVDS 182

Query: 259 INLAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGATLACGTGACAVVVAAV 318
           +NL  IGP FEHH  F  RTNTEF+QV     LKMRVWERGAG TLACGTGACA VVAAV
Sbjct: 183 LNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAV 242

Query: 319 LEGRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGSVPL 364
           L GR  R CTV+LPGG L+I W+ Q+N +YMTGPA+  F G   +
Sbjct: 243 LTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279

[Close]
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match: Q116P1 (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=dapF PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-105
Identity = 186/281 (66.19%), Postives = 218/281 (77.58%), Query Frame = 0 

Query: 81  FVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
           F KYHGLGNDFIL+DNR   +P +TPEQA++LCDRNFGIGADGVIFA+PGV  TDYTMRI
Sbjct: 5   FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64

Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEP 200
           FNSDGSEPEMCGNG+RC A+FIAELEN   +  + +HTGAG+I+PELQ DGQV VDMG+P
Sbjct: 65  FNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 124

Query: 201 ILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPHCVTFGNKIDQNLQVDEIN 260
            L AS++PT LA NAD+ VV   +EV G +W VTCVSMGNPHC+TF         V  I+
Sbjct: 125 RLLASEIPTTLA-NADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE------DVTAID 184

Query: 261 LAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGATLACGTGACAVVVAAVLE 320
           LA IGPKFEH+ +FP RTNTEF+QV S  ++KMRVWERGAGATLACGTGACA VVA VL 
Sbjct: 185 LAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLT 244

Query: 321 GRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGSV 362
               R  TV+LPGG L+I W+  +  +YMTGPAE  F G +
Sbjct: 245 QNNERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277

[Close]
BLAST of CmaCh07G009620 vs. TAIR 10
Match: AT3G53580.1 (diaminopimelate epimerase family protein )

HSP 1 Score: 527.3 bits (1357), Expect = 9.6e-150
Identity = 256/360 (71.11%), Postives = 297/360 (82.50%), Query Frame = 0 

Query: 5   ASISLPRTSPSPRSLASIPSFRSSFCSTLQLDSIGKNSARRRSPRLSVSVTSAGLHFT-E 64
           A++S    +P  R +++  S      S+L      K     +SP L VS  ++    T E
Sbjct: 4   AAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEKEYC-FKSPSLRVSAAASMDAVTAE 63

Query: 65  KASSLSFLERRESGFLHFVKYHGLGNDFILVDNRDSSEPRITPEQAVKLCDRNFGIGADG 124
           K S  SFL+++E+G LHFVKYHGLGNDFILVDNRDSSEP+IT EQA KLCDRNFG+GADG
Sbjct: 64  KFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADG 123

Query: 125 VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLI 184
           VIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENLQG+HSFT+HTGAGLI
Sbjct: 124 VIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLI 183

Query: 185 IPELQDDGQVKVDMGEPILKASDVPTRLAPNADESVVKSDIEVDGVTWSVTCVSMGNPHC 244
           +PE+QDDGQVKVDMG PILKA DVPT+L+ N  E+VV++++ VDGV+W+VTCVSMGNPHC
Sbjct: 184 VPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHC 243

Query: 245 VTFGNKIDQNLQVDEINLAAIGPKFEHHEMFPARTNTEFVQVFSKSHLKMRVWERGAGAT 304
           +TFG K   NL+VD++NL  IGPKFEHHEMFPARTNTEFV+V S+SHLKMRVWERGAGAT
Sbjct: 244 ITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGAT 303

Query: 305 LACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIGWNEQNNHVYMTGPAEVAFYGSVPL 364
           LACGTGACA+VVAAVLEGRA R CTVDLPGGPL+I W +++NH+YMTGPAE  FYGS  L
Sbjct: 304 LACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 362

The following BLAST results are available for this feature:
BLAST of CmaCh07G009620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFG21.3e-14871.11Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF... [more]
Q2QNF72.6e-13973.50Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
A2ZLS43.7e-13867.60Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica ... [more]
P746671.1e-10565.61Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
Q116P11.1e-10566.19Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 ... [more]
BLAST of CmaCh07G009620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53580.19.6e-15071.11diaminopimelate epimerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 57..202
e-value: 3.1E-45
score: 155.6
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 203..353
e-value: 6.7E-59
score: 200.2
NoneNo IPR availablePANTHERPTHR31689:SF0DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 46..362
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 79..208
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 222..360
IPR001653Diaminopimelate epimerase, DapFPFAMPF01678DAP_epimerasecoord: 81..201
e-value: 7.0E-35
score: 119.8
coord: 235..354
e-value: 8.2E-30
score: 103.5
IPR001653Diaminopimelate epimerase, DapFTIGRFAMTIGR00652TIGR00652coord: 80..360
e-value: 2.1E-93
score: 310.6
IPR001653Diaminopimelate epimerase, DapFPANTHERPTHR31689DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 46..362
IPR001653Diaminopimelate epimerase, DapFHAMAPMF_00197DAP_epimerasecoord: 79..363
score: 37.834648
IPR018510Diaminopimelate epimerase, active sitePROSITEPS01326DAP_EPIMERASEcoord: 142..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G009620.1CmaCh07G009620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008837 diaminopimelate epimerase activity