CmaCh07G009610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G009610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein SLOW GREEN 1, chloroplastic-like
Location	Cma_Chr07: 4647640 .. 4649925 (-)
RNA-Seq Expression	CmaCh07G009610
Synteny	CmaCh07G009610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATCCAAACAGTCTCCATGGAAGACGACCCCTCAGCTTCATACATTCACATGGTAATCTTTTTATTTTCTTTATTATTTTTTTTCTCAATTATTTCATTAAATTTGTGATGAGGGTCTATGATTGTTACGGTGTAGGTGCACCACCTGATTGAAATATGCATTCTTTTCAACATGTCCAAGGAAGAGTGCATGGAAGCTCTCTCCAAACATGCAAATATCGAACCGGTCATCACTTCCACCGGTTCGTTCACGTGACATGCACGGACTTCAACTCTTTTATTTTTTAATTTATAATTTTTATTTTTTTGAGGACTTTGTAAAATGTTGTGCAGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCCAAGCGTATGAGAAGAAACGACGTGACGTTACTACGAGGAAGTTGGAAGGGAACTCTTCGTCCGACACGTTGGGTTTCAACTTGCTGGGTTTGGGGGATACGACGTCGTTGGGTCGGTAGGTAACTACTAACTAGACAGGGTGGCGGAGTAGTGTTGGCGACGATACGACGTACGACGTCGTTCTTATGAGATCGTAGGCAGATAGAACAGCGCGAGAGGCTACTTAGAATGAAGATATTTTAAGATACTAATATTTTGGCTGGTTGGCTGACAGGTGGCGTGGTTCTGCAACTTTTTAAGAATGTATTGGTGTCGCTTGCTGATTGGGACTCCATGAGAGGTGACACGTGGCAGTTTATAATTTAATAAGTGTATTTTTTTTTTCTTCAACTGTAATTAGAGAATTCAAGCCTATTGTCAACTTTAGTTTGTTGCCTGCCGTCATCGCTATCATGATTTTAAAACATATATGTTAAGGAGAAATTTCTACGTTCTTATGAGGAATGATTCATTGTCCCTTTTCAACCGATGTAAGATTTCTCGATCTACGAGCCCCCGTAGTCGCTGGCATACTGCTTGGTCTAGCTCGGATACCAAATACAAAAAATAAATTGTCGATAAAAAAAAAAAACCAATAAATAGAATTAGTTAAAGGTTCGTTAGAATTTGCTTATTTTGGCAAAGCTCTTATGAAAAATTGGTATGGGCTTAAAGCCCAAATAGAGATGGATTATAATTTGGGCCTTTTTGCAAAATGATCTAAGCCTTCCAAACCTCCGGGCTCGAGATTGACCTGAAAATCGCCGGTTCTTCACAGAGCAACGCACAGAGGTTACGGCCATGGAGGGTCTTGCTACATTTCACCACCGTCCTCTTCCTTCTCAACAACATCTTTCCTTCAGCCGCCGTCTTCCGCTCTTCTCCTATCCCACTTCTTCTCTATTCTTCCGGTCTCCTCCGCTGTCTCGGCTTCGTTCTCCTTTGTCTTTCAGGTCATTATCTGTTAAAGCCTCGTCCTCTCCGTCGACCTCCGACGAAACCTCTCGAAACGCTAAGCCTTCAATTTCAGAGACTACGAATGACGGTTTTCTCTCTGGATTTCTCAGAACCGCTTGCATCTCCGTCGCCGCTGCTGCATTCTTCTTCCTTCGCTTCGACCATCGGCGCGCTGTTGTCGTTGCTGCCCCCGTGGCGCCGGAAATGACGGATTCTATTGAAGAATCGAATCCATATGAGGAAAATGAGAGCGTTGTGGAAGAGCAACCGGTGGATAATTCGAATGATGTTGAAGCTCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAATTGCCTGAAGCAATTGAAGCCCTAAACCGTTTGATTGAAATTGAGCCCAATGAACTTGAGTTGCCGTTGTTGAGAGCCAATTTCCATAGCTATATGGGGGAGCTCGAATTGGCGAAAAGTGAATTCGAGGAGATTTTAATGGAAGACCCATTACGTGTTGAGGCCTATCATGGCCTTGCAATGGTTTCGGAGCAATTGAATGACAATTCATTGAAGGACGTTGCTAAAAGGATCGAACAGGCAATGGAGAAATGTAAGAAGCAGAATAAGAAATCAGATATCAGGGATTTCAAGCTCTTGATAGCACAAATTAAGGTAATGGAAGGGAGTTATTTTGATGCGTTGAAAGCTTATCAAGAACTTGTGAGGGAAGAGCCAAGGGATTTTAGGCCATATCTGTGTCAGGGGATCATATACTCTCTGTTAAGGAAGAATGACGAGGCTGAGAAACAATTTGAGAAATTCAGGAGACTTGTTCCAAAGAATCATCCTTACAGAGAGTACTTTGATGAAAACGTGTTTGCAACAAAGCTTTTTGGTCAGAAATTAGAGAAGGAAGGAGCTGGTTTGAAGAGCTGA

mRNA sequence

CTCCATCCAAACAGTCTCCATGGAAGACGACCCCTCAGCTTCATACATTCACATGGTGCACCACCTGATTGAAATATGCATTCTTTTCAACATGTCCAAGGAAGAGTGCATGGAAGCTCTCTCCAAACATGCAAATATCGAACCGGTCATCACTTCCACCGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCCAAGCGTATGAGAAGAAACGACGTGACGTTACTACGAGGAAGTTGGAAGGGAACTCTTCGTCCGACACGTTGGGTTTCAACTTGCTGGGTTTGGGGGATACGACGTCGTTGGGTGGCGTGGTTCTGCAACTTTTTAAGAATGTATTGGTGTCGCTTGCTGATTGGGACTCCATGAGAGAGCAACGCACAGAGGTTACGGCCATGGAGGGTCTTGCTACATTTCACCACCGTCCTCTTCCTTCTCAACAACATCTTTCCTTCAGCCGCCGTCTTCCGCTCTTCTCCTATCCCACTTCTTCTCTATTCTTCCGGTCTCCTCCGCTGTCTCGGCTTCGTTCTCCTTTGTCTTTCAGGTCATTATCTGTTAAAGCCTCGTCCTCTCCGTCGACCTCCGACGAAACCTCTCGAAACGCTAAGCCTTCAATTTCAGAGACTACGAATGACGGTTTTCTCTCTGGATTTCTCAGAACCGCTTGCATCTCCGTCGCCGCTGCTGCATTCTTCTTCCTTCGCTTCGACCATCGGCGCGCTGTTGTCGTTGCTGCCCCCGTGGCGCCGGAAATGACGGATTCTATTGAAGAATCGAATCCATATGAGGAAAATGAGAGCGTTGTGGAAGAGCAACCGGTGGATAATTCGAATGATGTTGAAGCTCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAATTGCCTGAAGCAATTGAAGCCCTAAACCGTTTGATTGAAATTGAGCCCAATGAACTTGAGTTGCCGTTGTTGAGAGCCAATTTCCATAGCTATATGGGGGAGCTCGAATTGGCGAAAAGTGAATTCGAGGAGATTTTAATGGAAGACCCATTACGTGTTGAGGCCTATCATGGCCTTGCAATGGTTTCGGAGCAATTGAATGACAATTCATTGAAGGACGTTGCTAAAAGGATCGAACAGGCAATGGAGAAATGTAAGAAGCAGAATAAGAAATCAGATATCAGGGATTTCAAGCTCTTGATAGCACAAATTAAGGTAATGGAAGGGAGTTATTTTGATGCGTTGAAAGCTTATCAAGAACTTGTGAGGGAAGAGCCAAGGGATTTTAGGCCATATCTGTGTCAGGGGATCATATACTCTCTGTTAAGGAAGAATGACGAGGCTGAGAAACAATTTGAGAAATTCAGGAGACTTGTTCCAAAGAATCATCCTTACAGAGAGTACTTTGATGAAAACGTGTTTGCAACAAAGCTTTTTGGTCAGAAATTAGAGAAGGAAGGAGCTGGTTTGAAGAGCTGA

Coding sequence (CDS)

ATGGAAGACGACCCCTCAGCTTCATACATTCACATGGTGCACCACCTGATTGAAATATGCATTCTTTTCAACATGTCCAAGGAAGAGTGCATGGAAGCTCTCTCCAAACATGCAAATATCGAACCGGTCATCACTTCCACCGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCCAAGCGTATGAGAAGAAACGACGTGACGTTACTACGAGGAAGTTGGAAGGGAACTCTTCGTCCGACACGTTGGGTTTCAACTTGCTGGGTTTGGGGGATACGACGTCGTTGGGTGGCGTGGTTCTGCAACTTTTTAAGAATGTATTGGTGTCGCTTGCTGATTGGGACTCCATGAGAGAGCAACGCACAGAGGTTACGGCCATGGAGGGTCTTGCTACATTTCACCACCGTCCTCTTCCTTCTCAACAACATCTTTCCTTCAGCCGCCGTCTTCCGCTCTTCTCCTATCCCACTTCTTCTCTATTCTTCCGGTCTCCTCCGCTGTCTCGGCTTCGTTCTCCTTTGTCTTTCAGGTCATTATCTGTTAAAGCCTCGTCCTCTCCGTCGACCTCCGACGAAACCTCTCGAAACGCTAAGCCTTCAATTTCAGAGACTACGAATGACGGTTTTCTCTCTGGATTTCTCAGAACCGCTTGCATCTCCGTCGCCGCTGCTGCATTCTTCTTCCTTCGCTTCGACCATCGGCGCGCTGTTGTCGTTGCTGCCCCCGTGGCGCCGGAAATGACGGATTCTATTGAAGAATCGAATCCATATGAGGAAAATGAGAGCGTTGTGGAAGAGCAACCGGTGGATAATTCGAATGATGTTGAAGCTCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAATTGCCTGAAGCAATTGAAGCCCTAAACCGTTTGATTGAAATTGAGCCCAATGAACTTGAGTTGCCGTTGTTGAGAGCCAATTTCCATAGCTATATGGGGGAGCTCGAATTGGCGAAAAGTGAATTCGAGGAGATTTTAATGGAAGACCCATTACGTGTTGAGGCCTATCATGGCCTTGCAATGGTTTCGGAGCAATTGAATGACAATTCATTGAAGGACGTTGCTAAAAGGATCGAACAGGCAATGGAGAAATGTAAGAAGCAGAATAAGAAATCAGATATCAGGGATTTCAAGCTCTTGATAGCACAAATTAAGGTAATGGAAGGGAGTTATTTTGATGCGTTGAAAGCTTATCAAGAACTTGTGAGGGAAGAGCCAAGGGATTTTAGGCCATATCTGTGTCAGGGGATCATATACTCTCTGTTAAGGAAGAATGACGAGGCTGAGAAACAATTTGAGAAATTCAGGAGACTTGTTCCAAAGAATCATCCTTACAGAGAGTACTTTGATGAAAACGTGTTTGCAACAAAGCTTTTTGGTCAGAAATTAGAGAAGGAAGGAGCTGGTTTGAAGAGCTGA

Protein sequence

MEDDPSASYIHMVHHLIEICILFNMSKEECMEALSKHANIEPVITSTVWNELEKENKEFFQAYEKKRRDVTTRKLEGNSSSDTLGFNLLGLGDTTSLGGVVLQLFKNVLVSLADWDSMREQRTEVTAMEGLATFHHRPLPSQQHLSFSRRLPLFSYPTSSLFFRSPPLSRLRSPLSFRSLSVKASSSPSTSDETSRNAKPSISETTNDGFLSGFLRTACISVAAAAFFFLRFDHRRAVVVAAPVAPEMTDSIEESNPYEENESVVEEQPVDNSNDVEALRSLVEENVKSGKLPEAIEALNRLIEIEPNELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQLNDNSLKDVAKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFGQKLEKEGAGLKS

Homology

[Close]

BLAST of CmaCh07G009610 vs. ExPASy Swiss-Prot
Match: Q9LS48 (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-30
Identity = 83/226 (36.73%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 251 SIEESNPYEENESVVEEQPVDNSND-----VEALRSLVEENVKSGKLPEAIEALNRLIEI 310
           +IE++    + E + E  P+    D     VE LRSL+++ ++ G+  EA++ L RL+  
Sbjct: 88  TIEKTYEEVKEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAA 147

Query: 311 EPNELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQLNDNSLKDV 370
           +P E E   L A     MG  E A+  FEEIL  +PL  EA    A++ ++  + +   V
Sbjct: 148 QPEETEWKFLMARLLGEMGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGNA--V 207

Query: 371 AKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYLC 430
            +R+E A+   + +    + RD +L+IAQI  ++ +  +ALK+Y++L +E+P+DFRPY C
Sbjct: 208 LQRLEDALAVAEAEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFC 267

Query: 431 QGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFG 472
           +G+IYSLL KN EA++QF K+R L PK      Y    +   KLFG
Sbjct: 268 RGMIYSLLDKNVEAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFG 311

[Close]

BLAST of CmaCh07G009610 vs. TAIR 10
Match: AT2G37400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 298.5 bits (763), Expect = 9.6e-81
Identity = 180/355 (50.70%), Postives = 237/355 (66.76%), Query Frame = 0


Query: 130 GLATFHHRPLPSQQHLSFSRRLPLFSYPTSSLFFRSPPLSRLRSPLSFRSLSVKASSSPS 189
           G    H +P     HLSF+     F    SS   RS P    RS  SF+ +S+KASSS S
Sbjct: 5   GKLQLHQQP----NHLSFTHFSSSFPKKPSSFSLRSLP----RSTSSFKCISIKASSSKS 64

Query: 190 TSDETSRNAKPSISETTNDGFLSGFLRTACIS-VAAAAFFFLRFDHRRAVVVAAPV-APE 249
              + S                   L++ C+S  AAAA F +    + +  +AAPV A  
Sbjct: 65  QDSKLS------------------ILKSTCVSFTAAAALFLVNLQLKPSPAIAAPVAATP 124

Query: 250 MTDSIEESN---PYEENESVVEEQPVDNSNDVEALRSLVEENVKSGKLPEAIEALNRLIE 309
           + +S+++SN    +EE E  +EE    + +DVEALRSL+E  +KS KL EAIE ++RLIE
Sbjct: 125 LMESLKQSNGNVSFEEEERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIE 184

Query: 310 IEPNELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQLNDNSLKD 369
           +EP E E P+L+AN  SY G+LE AK+ FEEIL++DPLRVEAYHGL M      D+ L  
Sbjct: 185 LEPEEKEWPMLKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDD-LNA 244

Query: 370 VAKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYL 429
           V KRIE+AM +CKK+  + D+RDFKLL+AQI+V+EG + +ALK Y+ELV+EEPRDFRPYL
Sbjct: 245 VEKRIEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYL 304

Query: 430 CQGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFGQKLEKEGA 480
           CQGIIY++L+K +EAEKQFEKFRRLVPKNHPYREYF +N+ A+KLF +K+++E A
Sbjct: 305 CQGIIYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLFAEKVQREMA 332

[Close]

BLAST of CmaCh07G009610 vs. TAIR 10
Match: AT3G53560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 288.1 bits (736), Expect = 1.3e-77
Identity = 168/350 (48.00%), Postives = 236/350 (67.43%), Query Frame = 0


Query: 130 GLATFHHRPLPSQQHLSFSRRLPLFSYPTSSLFFRSPPLSRLRSPLSFRSLSVKASSSPS 189
           G    HH+P     HLS       F++ +SS F ++   S ++   S +S S+KASSS  
Sbjct: 5   GKLQLHHQPF----HLS-------FTHTSSSTFPKNLFKSSIQPISSLKSASIKASSS-- 64

Query: 190 TSDETSRNAKPSISETTNDGFLSGFLRTACISVAAAAFFFLRFDHRRAVVVAAPVAPEMT 249
                 +N+   + ++T         ++ CI++  AA   L   H ++  +AAP+AP  +
Sbjct: 65  ----KFQNSITPLPKSTP----FRLFKSTCITLTTAAALLLANLHLKSPAIAAPIAPPPS 124

Query: 250 DSIEESNPYEENESVVEEQPVDNSNDVEALRSLVEENVKSGKLPEAIEALNRLIEIEPNE 309
              +E+   EE E  ++E  + + +DV+ALRSL+E  +KS KL EA+E ++RLI++EP E
Sbjct: 125 VESKENVTLEEEERALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEE 184

Query: 310 LELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQLNDNSLKDVAKRI 369
            E P+L+AN  +Y G+L+LAK+ FEEIL +DPLRVEAYHGL M         LK+V  RI
Sbjct: 185 KEWPVLKANIFTYSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDAG-LDLKEVESRI 244

Query: 370 EQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII 429
           E+AM KCKK+N ++D RDFKLL+AQI+V+EG + +ALK YQELV+EEPRDFRPYLCQGII
Sbjct: 245 EEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGII 304

Query: 430 YSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFGQKLEKEGA 480
           Y+LL+K D+AE+QF+ FR+LVPKNHPYREYF +N+ ATKLF +K ++E A
Sbjct: 305 YTLLKKKDKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLFSEKAQREMA 332

[Close]

BLAST of CmaCh07G009610 vs. TAIR 10
Match: AT5G02590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-61
Identity = 140/311 (45.02%), Postives = 194/311 (62.38%), Query Frame = 0


Query: 174 PLSFRSLSVKASSSPSTSDETSRNAKPSISETTNDGFLSGFLRTACISVAAAAFFFLRFD 233
           P+S+R L     S    +   S N KPS            FL+T C+++  AA       
Sbjct: 28  PVSYRILHKPPPSRVIRASSFSSNPKPS------------FLKTTCVTLTTAAALLSASL 87

Query: 234 H------RRAVVVAAPVAPE-----MTDSIEESNPYEENESVVEEQPVDNSNDVEALRSL 293
           H        A +V+ P  P       +D I      EE E+ +E+    N NDVEAL+SL
Sbjct: 88  HLSTKPVTAATLVSPPPPPSTAADLTSDQISSRPKEEEEEAALEKHLTKNPNDVEALQSL 147

Query: 294 VEENVKSGKLPEAIEALNRLIEIEPNELELPLLRANFHSYMGELELAKSEFEEILMEDPL 353
           ++   ++  +  A+E LNRLIEI+P E E  +L+A   +Y G+ + A   FEE+L +DP 
Sbjct: 148 MKIKFQTKNIDHALEILNRLIEIQPEEQEWRILKAQVQTYGGDFDSATKGFEEVLSKDPF 207

Query: 354 RVEAYHGLAMVSEQLNDNSLKDVAKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSY 413
           RVEAYHGL M   + +++ L ++  RI +A+EKCKK+NKK D RDF LLIAQI+V++G+ 
Sbjct: 208 RVEAYHGLVMAYSE-SESKLSEIESRINEAIEKCKKENKK-DFRDFMLLIAQIRVIKGNP 267

Query: 414 FDALKAYQELVREEPRDFRPYLCQGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDE 473
            +AL+ YQELV++EP+DFRPYLCQG+IY+L++K DEAEKQF +FRRLVP+NHPY+EY D 
Sbjct: 268 IEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEKQFAEFRRLVPENHPYKEYLDA 324

[Close]

BLAST of CmaCh07G009610 vs. TAIR 10
Match: AT3G09490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 8.8e-42
Identity = 118/298 (39.60%), Postives = 174/298 (58.39%), Query Frame = 0


Query: 169 SRLRSPLSFRSLSVKASSSP-------STSDETSRNAKPSISETTNDGFLSGFLRTACIS 228
           S+L  PL FR    +A S+P       ++S  ++ N KPS+ +TT   F+S    TA  +
Sbjct: 27  SKLSFPLLFRD---QAKSTPIRFPVIRASSSSSASNHKPSLLKTT---FIS---LTAAAA 86

Query: 229 VAAAAFFFLRFDHRRAVVVAAPVAPEMTDSIEESNPYEENESVVEEQPVDNSNDVEALRS 288
           + +A+F+F+   ++RA +    V                 E+ +E+     SNDV AL  
Sbjct: 87  LFSASFYFV---NKRAAMTPVAVV----------------ETTLEKHLETQSNDVNALSL 146

Query: 289 LVEENVKSGKLPEAIEALNRLIEIEPNELELPLLRANFHSYMGELELAKSEFEEILMEDP 348
           L E   KS K  +AI  L+RLIEIEP E + P ++A   SY G+ E A   FEEIL +DP
Sbjct: 147 LTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARILSYHGKSESAIEAFEEILEKDP 206

Query: 349 LRVEAYHGLAMVSEQLNDN-SLKDVAKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEG 408
           +RV+AYH L M  E  N    L ++ KRI + + +CKK+ K  +I  F++LIAQI+ +EG
Sbjct: 207 IRVDAYHYLVM--EYYNSKPKLTEIEKRINKVIRRCKKEKKTKEILGFRMLIAQIRFIEG 266

Query: 409 SYFDALKAYQELVREEPRDFRPYLCQGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYRE 459
              +A++  +ELV+E+P DF  YL QG++Y+L+ K +EA KQFE   R++P+NHP RE
Sbjct: 267 KSVEAIRICEELVKEDPNDFTIYLFQGVVYTLMNKGEEAAKQFEHVARVIPRNHPSRE 294

[Close]

BLAST of CmaCh07G009610 vs. TAIR 10
Match: AT4G39470.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-35
Identity = 113/351 (32.19%), Postives = 193/351 (54.99%), Query Frame = 0


Query: 125 VTAMEGLATFHHRPLPSQQHLSFSRRLPLFSYPTSSLFFRSPPLSRLRSPLSFRSLSVKA 184
           VTA+   A FHHR    +Q L F+        PT            LR+P  F+    K+
Sbjct: 6   VTALCSPAKFHHR---REQSLIFT--------PT-----------HLRNPNGFQFRWRKS 65

Query: 185 SSSPSTSDETSRNAKP------SISETTNDGFLSGFLRTACISVAAAAFFFLRFDHRRAV 244
                   +    A P      S S  ++  F+    R A I +   +F FL F   +  
Sbjct: 66  RPFAPRLAQPDNFAPPLPLIRSSTSLLSSKDFVQMLARKAAI-LLVGSFVFLGFCSSKP- 125

Query: 245 VVAAPVAPEMTDS-IEESNPYEENESVVEEQPVDNSNDVEALRSLVEENVKSGKLPEAIE 304
            +A P A  ++ + +E+   +E+   ++E +P     ++EA++++V + ++ GK  +A++
Sbjct: 126 ALALPTATVVSQAELEDEKMFEK---LLENEP----ENMEAMKAVVYKKMRRGKNEDAVK 185

Query: 305 ALNRLIEIEPNELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQL 364
            + +L+++EP+E+E  LL A  +  MGEL  AK  +++IL E PL + A HGLAMV  + 
Sbjct: 186 YVEKLMKLEPHEVEWKLLEALCYETMGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKT 245

Query: 365 NDNSLKDVAKRIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEP 424
           +D S+ D+   + +AME  ++ N+ ++ R+ ++LI Q+ ++EG + + LK +Q++V + P
Sbjct: 246 HDTSVFDM---LIEAMEVARQGNRVTEERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNP 305

Query: 425 RDFRPYLCQGIIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATK 469
           RDFRPYLCQGI+YSL+ K +EA +QFE +  LVP   P + + D+   A +
Sbjct: 306 RDFRPYLCQGIVYSLMDKKEEAAQQFEIYWSLVPGEFPQKGFLDDVALAAQ 322

The following BLAST results are available for this feature:

BLAST of CmaCh07G009610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS48	1.5e-30	36.73	protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 ...	[more]

BLAST of CmaCh07G009610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37400.1	9.6e-81	50.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53560.1	1.3e-77	48.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02590.1	1.7e-61	45.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09490.1	8.8e-42	39.60	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39470.1	2.7e-35	32.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 362..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..203
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 144..475
None	No IPR available	PANTHER	PTHR26312:SF146	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 144..475
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 420..453 e-value: 8.4 score: 15.3 coord: 276..309 e-value: 18.0 score: 12.7 coord: 386..419 e-value: 190.0 score: 3.7
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 276..309 score: 8.8799
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 13..64 e-value: 8.5E-26 score: 90.0
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 10..65 e-value: 1.4E-24 score: 83.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 250..385 e-value: 1.8E-13 score: 52.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 386..464 e-value: 2.3E-7 score: 32.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 276..460

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G009610.1	CmaCh07G009610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding