CmaCh07G006920 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G006920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Location	Cma_Chr07: 3040726 .. 3044464 (+)
RNA-Seq Expression	CmaCh07G006920
Synteny	CmaCh07G006920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATCGCAATGCTCTCTCTCTCTCTCTCTTCTTCCTCGGAGAGGACAGCACTCCGATGGACGGCATGGCGAGCTACTTTCCGCCACCACCTCAACCACAGCCACTACCGTCGCAGGCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTATCAGCTTCCTCCTTCTTCATCACCGCCGTCTCAGCATTACCTCGCTCAACAGCCTCCCACCTTCGCTTCCTATGGCTTTCCTTTTTTTACCTCACGCAGCGTCCATCAATGAGGTCCGAACCCTATTCATAGCTGGCCTTTTTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAATTTCCGGGATACGAGTCCTCTCATCTACGGAGTCCCTCGCAGACGACGCAGGTGTTGTAGTTTGCTTTTCTAATGTTCAAAATTGTTTTTCCTTGTGGCATTATTTATTTATTTTTAATTTATGAATGTGAATAGTCTTCAATTTGAGTGCCTCGATGCTTACACATGTAAATGCTCTTAGCTCTGCTTCTAAAGGCTATGGGCGAGTAAAAGAGTGAAATCCCACCTCAGTTGGAGAGGGGGAGTATTACTTATAAGAGGTAAAAATCGCAATTAAAACTTTAAGGGAAAGCCCATAAGGGAAACCAAAAGAAGGACAAGTAAAGCATGCCAGACGGGCTGTACGCCAGTGAAAACTTTGGGTCCAAGGGGTGGGTATTGTTAGAGGAAACAGAGCCTTTCTTATTTCTCCTCCAGGAAACGCGTTTTGAAGTTTTGAAGTTTTGAGGGGATAGGAAGTGAAAATTCAAAGAGGACAATATTTATTAGGGCTGAATTTGGACTGGTTTAATATTGAAAGATGGAGATTAAACACTGGTTCACAGACTTTTGGTTAGGTTACTGTCGTTTTTGGCTTCTGAAGATGTTCGAGATGATCATGGTTGAACAAAATTAGCTTTGACCTGGTTTGTTGTGGCTTGTTTAATATTCATCTTTATCAGATATTTGAATGTTAATTTAGAGATAAGAAACCTGAGAAACAAACCTAATTACCTGTCAATGGAAAGTAGTGTGTTCCCACTCATCTGCCTTAGCCAAGAAGTACCAGAGATTTTATGTTGTGGACAACAAATACGCCATGGTTCATGTCATTTTTATGGATGAAATTCCTTAGCCTGTGCAACTCAAATTCAACTTTGAACAATCCAAATCTTTTTGCTAGAATTTCTTGTTACAAAATCATTGCTCACAAACTGCAAATGCAAGTTCCGATCATGATGTTACACATGTAATTCTATTGCTTTCTTTTGTACCATTTGATTGGATAATGGTGAATTGTACGTTAGGCATCTATATTTTGTTGTCAGGACAGCAAACTGAATCCTTTGTTGGCAATGCCTAAACAGGCTTGCATTGTGTTATTGGTATTCTTATTTAAGGGTTCTTAAGGTGGTCAATATAATTTCAGGTCCCGGGATGGTTATAATGGTAATATGTGACAGTCACTGGATTTTGACTAAGCTATGAGCTGTGGAGACCATAAACTGGGATATTAATATCCCATGTTTTCAATTGACAAATACGATACTGTAATCTCCAGTTTCAAATCTAATGTAATATCTGATGTGCAGTATACCTATGACTACTGTGTTGATGGTTGACCTTATATTTTATTGATTAGCCTAGTGCATGCATTTTTTTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGTTACAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAATGTAAGTACTTGTTCCCTGCTTCTGTATTTTTCATGTTTTTGGATAAGAAAATCATATAATTGATCAAAGGAAATATGCAAAAGGAACATGGAAGAAGAATTTAGCCCTGTTGAAGTTACAACTTCAGGGAACTCTCGACATACTCTTCATTTCTTTGAAATCTGGAACTCTGAGTTTGATTCGTTATTTTTACCTTTAAGCATTACTGGTCATTCATTGACCTTAAAAATAAGGTGGACCACTATTATTGCTGCCATAACACTAAACAGTTCTAGTTCATGGTTTAACTTCCTTCTGCTAGCCATTTTCTAGTTGTGTATACATTTATGGAAAGAGAACTAACTCTAATCTCAAGCATCTCAAGAATCTTTTGACTTGTTATTTTAATATTTTTTCCCAAAAAGAAAAACTAGAATTTGACCTTCTAAATTCATTTTTAAATGGCAGTTCATTTTTCTTCCCTACAGATCCTTTATCTAATTTGTTTTATACAAACCTCTTTGATCCAATTCGTTTTTCTTCTGAATCTTTGTTTCAATTGGTCGCTCTTTCAAAGCTGCTAATACTAATTATAAGAAGGGGGTTAGAAAGTGTTTTGGGTCTCCTCCTCTCTCCTCTGCTGCTTGTAAGATTAGAAATTGAAAGGATGAAGAAATGCTGATGTAATATAGAAATATATGCTTCTCAAGCCTCCTCACTCTTTTTCAACTTATTCCTCTACAGGAAATTTGTTCTATTAGTGGACTACTTGAGGTACACCTAGCCTAGGTATCAAAAGATTTCTATGCTGGGTAATGAATCACATTAAAACAACGGGTTGTTACAAATGGTATCAGAGCCAGACCCAGGCCTGCCGTTAGCAGATATTGTCCTCTTTGGACTTTCCTTTTCGGGCTTCCTCTCAAGGCTTTAAAACACGTCTGCTAAGAGAAGGTTTTCACACCTTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGTCAGCTTTCTCGCTATTCCCCGAAGGGTGGTAGACACAAGGTGGTGTGCCAGTAAGGACGCTGGGCCACAAAGGGGGTGGATTTGGGGGCGGTCCTACATCGATTGGAGGAAGGAAAGAGTGTCAGCGAGGACGCTGGGCCCCGAAGGGGGTGGGTTGTGATGTCCTACATTGGTTTGGGAGGAGAACAAACCACCATTTACAAGGGTGTGGAAACCTTCCCTTAGCATACACATTTTAAAGCCTTGAGGGGAAGTTCGAGAGGGAAAGCTCAAAGAAGACAATATCGGCTAGCAGGAGCCTAGGATACTATTTCATTGGTGTAAATAATTATATGCAGTTAGCGTCGGGATTCATGGATCAGACACTCCATTCTGCGCTTATTTACGTTAATTATATGCAGCTCTCTGCACTACCGACATTATCATCCATATGGCTTTGAACTATTTTGGATTCTTATATCCCTAACCATTCCCAAGACGTGCTGCTTTTTAGATATTCCAGGATACTATTTCATTGGTGTAAATAATCATTCGAAGTTGGCGTGTTGGTCTGTTGCTTACATTCTTTCATGTCAGCCCATTGAGTCTTTCTCATAGGAGAGATTTAAAGCGAAAGTAAGCTTTTCATATGAAAAGGTGTCTGAGCATTCCAGTGTTATGTTGTGTGAAATGTGCACTTGCAATGAATGGGTGCAGGATACTGCCTGTTCAACTGGAGCATTGAACCATCTGCAAGGCACAATTCTGTACTCGTCACCTCCTGGGGAGGGCATGCGGTTGGAGTATCCTTCTACAGGCTTGTATATACGTCATGCCTCCAAATGTTTTGCTTAACCCAGGATTTAGGTACCCAAAATCCCGAATGGGCATGCGCAAGAAATTGAAATGA

mRNA sequence

ATTTGATCGCAATGCTCTCTCTCTCTCTCTCTTCTTCCTCGGAGAGGACAGCACTCCGATGGACGGCATGGCGAGCTACTTTCCGCCACCACCTCAACCACAGCCACTACCGTCGCAGGCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTATCAGCTTCCTCCTTCTTCATCACCGCCGTCTCAGCATTACCTCGCTCAACAGCCTCCCACCTTCGCTTCCTATGGCTTTCCTTTTTTTACCTCACGCAGCGTCCATCAATGAGGTCCGAACCCTATTCATAGCTGGCCTTTTTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAATTTCCGGGATACGAGTCCTCTCATCTACGGAGTCCCTCGCAGACGACGCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAATGAAATATGCAAAAGGAACATGGAAGAAGAATTTAGCCCTGTTGAAGTTACAACTTCAGGGAACTCTCGACATACTCTTCATTTCTTTGAAATCTGGAACTCTGAGTTTGATTCGTTATTTTTACCTTTAAGCATTACTGGTCATTCATTGACCTTAAAAATAAGGTGGACCACTATTATTGCTGCCATAACACTAAACAGTTCTAGTTCATGTTCATTTTTCTTCCCTACAGATCCTTTATCTAATTTGTTTTATACAAACCTCTTTGATCCAATTCGTTTTTCTTCTGAATCTTTGTTTCAATTGGTCGCTCTTTCAAAGCTGCTAATACTAATTATAAGAAGGGGGAAATTTGTTCTATTAGTGGACTACTTGAGCTCTCTGCACTACCGACATTATCATCCATATGGCTTTGAACTATTTTGGATTCTTATATCCCTAACCATTCCCAAGACGTGCTGCTTTTTAGATATTCCAGGATACTATTTCATTGGTGAGAGATTTAAAGCGAAAGTAAGCTTTTCATATGAAAAGGTGTCTGAGCATTCCAGTGTTATGTTGTGTGAAATGTGCACTTGCAATGAATGGGTGCAGGATACTGCCTGTTCAACTGGAGCATTGAACCATCTGCAAGGCACAATTCTGTACTCGTCACCTCCTGGGGAGGGCATGCGGTTGGAGTACCCAAAATCCCGAATGGGCATGCGCAAGAAATTGAAATGA

Coding sequence (CDS)

ATGCTCTCTCTCTCTCTCTCTTCTTCCTCGGAGAGGACAGCACTCCGATGGACGGCATGGCGAGCTACTTTCCGCCACCACCTCAACCACAGCCACTACCGTCGCAGGCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTATCAGCTTCCTCCTTCTTCATCACCGCCGTCTCAGCATTACCTCGCTCAACAGCCTCCCACCTTCGCTTCCTATGGCTTTCCTTTTTTTACCTCACGCAGCGTCCATCAATGAGGTCCGAACCCTATTCATAGCTGGCCTTTTTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAATTTCCGGGATACGAGTCCTCTCATCTACGGAGTCCCTCGCAGACGACGCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAATGAAATATGCAAAAGGAACATGGAAGAAGAATTTAGCCCTGTTGAAGTTACAACTTCAGGGAACTCTCGACATACTCTTCATTTCTTTGAAATCTGGAACTCTGAGTTTGATTCGTTATTTTTACCTTTAAGCATTACTGGTCATTCATTGACCTTAAAAATAAGGTGGACCACTATTATTGCTGCCATAACACTAAACAGTTCTAGTTCATGTTCATTTTTCTTCCCTACAGATCCTTTATCTAATTTGTTTTATACAAACCTCTTTGATCCAATTCGTTTTTCTTCTGAATCTTTGTTTCAATTGGTCGCTCTTTCAAAGCTGCTAATACTAATTATAAGAAGGGGGAAATTTGTTCTATTAGTGGACTACTTGAGCTCTCTGCACTACCGACATTATCATCCATATGGCTTTGAACTATTTTGGATTCTTATATCCCTAACCATTCCCAAGACGTGCTGCTTTTTAGATATTCCAGGATACTATTTCATTGGTGAGAGATTTAAAGCGAAAGTAAGCTTTTCATATGAAAAGGTGTCTGAGCATTCCAGTGTTATGTTGTGTGAAATGTGCACTTGCAATGAATGGGTGCAGGATACTGCCTGTTCAACTGGAGCATTGAACCATCTGCAAGGCACAATTCTGTACTCGTCACCTCCTGGGGAGGGCATGCGGTTGGAGTACCCAAAATCCCGAATGGGCATGCGCAAGAAATTGAAATGA

Protein sequence

MLSLSLSSSSERTALRWTAWRATFRHHLNHSHYRRRLLVLKLLTIPIISFLLLHHRRLSITSLNSLPPSLPMAFLFLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMHAVNEICKRNMEEEFSPVEVTTSGNSRHTLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTDPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGFELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK

Homology

[Close]

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-08
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 85  EVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMH 144
           EVRTLF++GL  D+KPRE+Y LFR F GYE S ++  S+  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 145 AVNEI 150
           A+N I
Sbjct: 83  ALNGI 85

[Close]

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-08
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 85  EVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMH 144
           EVRTLF++GL  D+KPRE+Y LFR F GYE S ++  S+  QP  F  F  +  A  A +
Sbjct: 18  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKN 77

Query: 145 AVNEI 150
           A+N I
Sbjct: 78  ALNGI 80

[Close]

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-08
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 85  EVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMH 144
           EVRTLF++GL  D+KPRE+Y LFR F GYE S ++  S+  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 145 AVNEI 150
           A+N I
Sbjct: 80  ALNGI 82

[Close]

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-08
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 85  EVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMH 144
           EVRTLF++GL  D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 29  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKN 88

Query: 145 AVNEI 150
           A+N I
Sbjct: 89  ALNGI 91

[Close]

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-08
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 85  EVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMH 144
           EVRTLF++GL  D+KPRE+Y LFR F GYE S ++  S+  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 145 AVNEI 150
           A+N I
Sbjct: 78  ALNGI 80

[Close]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL
Match: A0A6J1IQG5 (protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-43
Identity = 140/342 (40.94%), Postives = 165/342 (48.25%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGN---------SRHT 195
           QQSA+GAMHAVN              ++ K N   +    E    G+         SR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 196 -------LHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTD 255
                   H   + NS ++++  P + +  S   K    T+ A +T  +           
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQN----------P 240

Query: 256 PLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGF 315
           P   LF  NL      + + L Q+                                    
Sbjct: 241 PCPTLFVANLGPSC--TEQELIQI------------------------------------ 300

Query: 316 ELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQ 375
                           F   PG+       K K+  +Y      + V   +        Q
Sbjct: 301 ----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF-------Q 320

Query: 376 DTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           DTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 DTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL
Match: A0A6J1IMS7 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-43
Identity = 140/343 (40.82%), Postives = 165/343 (48.10%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGN---------SRHT 195
           QQSA+GAMHAVN              ++ K N   +    E    G+         SR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 196 --------LHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPT 255
                    H   + NS ++++  P + +  S   K    T+ A +T  +          
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQN---------- 240

Query: 256 DPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYG 315
            P   LF  NL      + + L Q+                                   
Sbjct: 241 PPCPTLFVANLGPSC--TEQELIQI----------------------------------- 300

Query: 316 FELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWV 375
                            F   PG+       K K+  +Y      + V   +        
Sbjct: 301 -----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF------- 321

Query: 376 QDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           QDTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 QDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL
Match: A0A6J1GD02 (protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-43
Identity = 136/342 (39.77%), Postives = 165/342 (48.25%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL +DVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH---------- 195
           QQSA+GAMHAVN              ++ K N   + +  E    G+ +           
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 196 ------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTD 255
                 + H   + NS ++++  P + +  S   K    T+ A +T  +           
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQN----------P 240

Query: 256 PLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGF 315
           P   LF  NL      + + L Q+                                    
Sbjct: 241 PCPTLFVANLGPSC--TEQELIQI------------------------------------ 300

Query: 316 ELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQ 375
                           F   PG+       K K+  +Y      + V   +        Q
Sbjct: 301 ----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF-------Q 320

Query: 376 DTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           DTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 DTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL
Match: A0A6J1GCW9 (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 136/343 (39.65%), Postives = 165/343 (48.10%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL +DVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH---------- 195
           QQSA+GAMHAVN              ++ K N   + +  E    G+ +           
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 196 -------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPT 255
                  + H   + NS ++++  P + +  S   K    T+ A +T  +          
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQN---------- 240

Query: 256 DPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYG 315
            P   LF  NL      + + L Q+                                   
Sbjct: 241 PPCPTLFVANLGPSC--TEQELIQI----------------------------------- 300

Query: 316 FELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWV 375
                            F   PG+       K K+  +Y      + V   +        
Sbjct: 301 -----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF------- 321

Query: 376 QDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           QDTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 QDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL
Match: A0A0A0KLD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.9e-41
Identity = 133/346 (38.44%), Postives = 163/346 (47.11%), Query Frame = 0


Query: 73  AFLFLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAV 132
           A   LPH  SINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLR+P+QTTQPFAFAV
Sbjct: 54  ALPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAV 113

Query: 133 FSDQQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH------- 192
           FSDQQSA+GAMHAVN              ++ K N   + +  E    G+ +        
Sbjct: 114 FSDQQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIP 173

Query: 193 ----------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFF 252
                     + H   + NS ++++  P + +  S   K          T+N + + +  
Sbjct: 174 RSTPDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNK----------TVNDTVAANVI 233

Query: 253 FPTDPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYH 312
               P   LF  NL      + + L Q+                                
Sbjct: 234 PQNPPCPTLFVANLGPGC--TEQELIQI-------------------------------- 293

Query: 313 PYGFELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCN 372
                               FL  PG+       K K+  +Y      + V   +     
Sbjct: 294 --------------------FLRCPGF------LKLKMQSTY-----GAPVAFVDF---- 317

Query: 373 EWVQDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
              QDTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKK K
Sbjct: 354 ---QDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKPK 317

[Close]

BLAST of CmaCh07G006920 vs. NCBI nr
Match: XP_023543723.1 (protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-42
Identity = 137/342 (40.06%), Postives = 165/342 (48.25%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH---------- 195
           QQSA+GAMHAVN              ++ K N   + +  E    G+ +           
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 196 ------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTD 255
                 + H   + NS ++++  P + +  S   K    T+ A +T  +           
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQN----------P 240

Query: 256 PLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGF 315
           P   LF  NL      + + L Q+                                    
Sbjct: 241 PCPTLFVANLGPSC--TEQELVQI------------------------------------ 300

Query: 316 ELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQ 375
                           F   PG+       K K+  +Y      + V   +        Q
Sbjct: 301 ----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF-------Q 320

Query: 376 DTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           DTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 DTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of CmaCh07G006920 vs. NCBI nr
Match: XP_022977593.1 (protein WHI4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-42
Identity = 140/342 (40.94%), Postives = 165/342 (48.25%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGN---------SRHT 195
           QQSA+GAMHAVN              ++ K N   +    E    G+         SR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 196 -------LHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTD 255
                   H   + NS ++++  P + +  S   K    T+ A +T  +           
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQN----------P 240

Query: 256 PLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGF 315
           P   LF  NL      + + L Q+                                    
Sbjct: 241 PCPTLFVANLGPSC--TEQELIQI------------------------------------ 300

Query: 316 ELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQ 375
                           F   PG+       K K+  +Y      + V   +        Q
Sbjct: 301 ----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF-------Q 320

Query: 376 DTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           DTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 DTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of CmaCh07G006920 vs. NCBI nr
Match: XP_023543722.1 (uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-42
Identity = 137/343 (39.94%), Postives = 165/343 (48.10%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH---------- 195
           QQSA+GAMHAVN              ++ K N   + +  E    G+ +           
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 196 -------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPT 255
                  + H   + NS ++++  P + +  S   K    T+ A +T  +          
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQN---------- 240

Query: 256 DPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYG 315
            P   LF  NL      + + L Q+                                   
Sbjct: 241 PPCPTLFVANLGPSC--TEQELVQI----------------------------------- 300

Query: 316 FELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWV 375
                            F   PG+       K K+  +Y      + V   +        
Sbjct: 301 -----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF------- 321

Query: 376 QDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           QDTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 QDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of CmaCh07G006920 vs. NCBI nr
Match: XP_022977595.1 (U1 small nuclear ribonucleoprotein A isoform X2 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-42
Identity = 140/343 (40.82%), Postives = 165/343 (48.10%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL EDVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGN---------SRHT 195
           QQSA+GAMHAVN              ++ K N   +    E    G+         SR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 196 --------LHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPT 255
                    H   + NS ++++  P + +  S   K    T+ A +T  +          
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQN---------- 240

Query: 256 DPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYG 315
            P   LF  NL      + + L Q+                                   
Sbjct: 241 PPCPTLFVANLGPSC--TEQELIQI----------------------------------- 300

Query: 316 FELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWV 375
                            F   PG+       K K+  +Y      + V   +        
Sbjct: 301 -----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF------- 321

Query: 376 QDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           QDTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 QDTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of CmaCh07G006920 vs. NCBI nr
Match: XP_022949757.1 (protein WHI4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-42
Identity = 136/342 (39.77%), Postives = 165/342 (48.25%), Query Frame = 0


Query: 76  FLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSD 135
           FLPHAASINEVRTLFIAGL +DVKPREIYNLFREFPGYESSHLRSP+QTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 136 QQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRH---------- 195
           QQSA+GAMHAVN              ++ K N   + +  E    G+ +           
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 196 ------TLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTD 255
                 + H   + NS ++++  P + +  S   K    T+ A +T  +           
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQN----------P 240

Query: 256 PLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGF 315
           P   LF  NL      + + L Q+                                    
Sbjct: 241 PCPTLFVANLGPSC--TEQELIQI------------------------------------ 300

Query: 316 ELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQ 375
                           F   PG+       K K+  +Y      + V   +        Q
Sbjct: 301 ----------------FSRCPGF------LKLKMQSTY-----GAPVAFVDF-------Q 320

Query: 376 DTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 388
           DTACSTGALNHLQG+ILYSSPPGEGMRLEY KSRMGMRKKLK
Sbjct: 361 DTACSTGALNHLQGSILYSSPPGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of CmaCh07G006920 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-25
Identity = 114/338 (33.73%), Postives = 149/338 (44.08%), Query Frame = 0


Query: 75  LFLPHAASI---NEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFA 134
           ++LP   SI   +EVRTLF+AGL EDVKPREIYNLFREFPGYE+SHLRS S   +PFAFA
Sbjct: 35  VYLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFA 94

Query: 135 VFSDQQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRHTLHFFE 194
           VFSD QSA+  MHA+N              ++ K N + + S  +     +   +L   +
Sbjct: 95  VFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTD-----DGWESLKKLK 154

Query: 195 IWNSEFDSLFLPLSITGHSLTLKIRWTTI---------IAAITLNSSSSCSFFFPTDPLS 254
            WN+  +S F      G S +    + TI         IA +   + +S       DP  
Sbjct: 155 SWNTTTESGFGSFQTPGMSSS---AYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCP 214

Query: 255 NLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGFELF 314
            LF  N+  P    +E           LI +  R +  L                     
Sbjct: 215 TLFIANM-GPNCTEAE-----------LIQVFSRCRGFLK-------------------- 274

Query: 315 WILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQDTA 374
                         L I G Y     F   V F                       QD +
Sbjct: 275 --------------LKIQGTYGTPVAF---VDF-----------------------QDVS 291

Query: 375 CSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKL 387
           CS+ AL+ LQGT+LYSS  GE +RL+Y +SRMGMRKK+
Sbjct: 335 CSSEALHTLQGTVLYSSLTGEVLRLQYARSRMGMRKKI 291

[Close]

BLAST of CmaCh07G006920 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-23
Identity = 113/338 (33.43%), Postives = 147/338 (43.49%), Query Frame = 0


Query: 75  LFLPHAASI---NEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFA 134
           ++LP   SI   +EVRTLF+AGL EDVKPREIYNLFREFPGYE+SHLRS S   +PFAFA
Sbjct: 35  VYLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFA 94

Query: 135 VFSDQQSAIGAMHAVN--------------EICKRNMEEEFSPVEVTTSGNSRHTLHFFE 194
           VFSD QSA+  MHA+N              ++ K N + + S  +     +   +L   +
Sbjct: 95  VFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTD-----DGWESLKKLK 154

Query: 195 IWNSEFDSLFLPLSITGHSLTLKIRWTTI---------IAAITLNSSSSCSFFFPTDPLS 254
            WN+  +S F      G S +    + TI         IA +   + +S       DP  
Sbjct: 155 SWNTTTESGFGSFQTPGMSSS---AYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCP 214

Query: 255 NLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGFELF 314
            LF  N+  P    +E           LI +  R +  L                     
Sbjct: 215 TLFIANM-GPNCTEAE-----------LIQVFSRCRGFLK-------------------- 274

Query: 315 WILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQDTA 374
                         L I G Y     F   V F                       QD +
Sbjct: 275 --------------LKIQGTYGTPVAF---VDF-----------------------QDVS 288

Query: 375 CSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKL 387
           CS+ AL+ LQGT+LYSS  GE +RL+   SRMGMRKK+
Sbjct: 335 CSSEALHTLQGTVLYSSLTGEVLRLQ---SRMGMRKKI 288

[Close]

BLAST of CmaCh07G006920 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 102.8 bits (255), Expect = 6.2e-22
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 75  LFLPHAASI---NEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFA 134
           ++LP   SI   +EVRTLF+AGL EDVKPREIYNLFREFPGYE+SHLRS S   +PFAFA
Sbjct: 35  VYLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFA 94

Query: 135 VFSDQQSAIGAMHAVN 148
           VFSD QSA+  MHA+N
Sbjct: 95  VFSDLQSAVAVMHALN 109

HSP 2 Score: 45.1 bits (105), Expect = 1.5e-04
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 345 QDTACSTGALNHLQGTILYSSPPGEGMRLEYP 377
           QD +CS+ AL+ LQGT+LYSS  GE +RL+YP
Sbjct: 250 QDVSCSSEALHTLQGTVLYSSLTGEVLRLQYP 281

[Close]

BLAST of CmaCh07G006920 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-09
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 66  LPPSLPMAFLFLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTT 125
           LPP LP+       A     + TLF++GL  DVK REI+NLFR   G+ES  L+   +  
Sbjct: 22  LPPQLPLL------ADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGD 81

Query: 126 QPFAFAVFSDQQSAIGAMHAVNEI 150
           Q  AFA F+  + A+ AM+ +N +
Sbjct: 82  QVVAFATFTSHRFALAAMNELNGV 99

[Close]

BLAST of CmaCh07G006920 vs. TAIR 10
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-08
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 84  NEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGA 143
           +E+RT+FIAGL +DVK RE+ NL R  PGYE+S +    +  +P  FA+FS  Q A+ A
Sbjct: 56  DELRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGE--KPMGFALFSTAQFAMAA 112

The following BLAST results are available for this feature:

BLAST of CmaCh07G006920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VC52	1.7e-08	49.23	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6DH13	2.9e-08	49.23	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	3.8e-08	49.23	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q6ZRY4	3.8e-08	47.69	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q9YGP5	3.8e-08	49.23	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]

BLAST of CmaCh07G006920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQG5	6.4e-43	40.94	protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1	[more]
A0A6J1IMS7	8.4e-43	40.82	U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GD02	8.4e-43	39.77	protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1	[more]
A0A6J1GCW9	1.1e-42	39.65	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KLD8	7.9e-41	38.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1	[more]

BLAST of CmaCh07G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543723.1	1.0e-42	40.06	protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022977593.1	1.3e-42	40.94	protein WHI4 isoform X1 [Cucurbita maxima]	[more]
XP_023543722.1	1.3e-42	39.94	uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022977595.1	1.7e-42	40.82	U1 small nuclear ribonucleoprotein A isoform X2 [Cucurbita maxima]	[more]
XP_022949757.1	1.7e-42	39.77	protein WHI4 isoform X2 [Cucurbita moschata]	[more]

BLAST of CmaCh07G006920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42240.1	1.6e-25	33.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	4.3e-23	33.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	6.2e-22	71.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	2.1e-09	40.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G21215.1	6.7e-08	49.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..157 e-value: 3.1E-4 score: 30.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..151 e-value: 7.6E-7 score: 28.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..168 score: 8.961646
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 82..164 e-value: 1.3E-13 score: 52.8
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 342..373
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 72..149
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 72..149
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 342..373
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 81..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G006920.1	CmaCh07G006920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding