CmaCh07G000190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G000190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 138778 .. 139528 (+)
RNA-Seq ExpressionCmaCh07G000190
SyntenyCmaCh07G000190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGCTGCGTTGGCCTCCAAAACTCAATTCATATGTTGCTCTCCTGGATACTACATAGCAACCTATGTATGATTCCTACAACTAATTTGAACTGCATAAAGTTCTGTCTTGTCTTTTGTTTCCCCTTTTCTAATCTGACGTATAGTGCTTAAGACATTAGGCATGTCAATTAGATTTTCATAGTAATGTAGTGAACGTTTTCATTTTTGCGTACGTTTTCCACTTTATACTCTGGATCCCAAATCAGCACAACGTGAACTTTATTTATCAAATGAAATTGTACTGTATCATTGAACTTCACCTTTTATGCAATATCTTCCGAATGATTTGTGTTGTGTACTAACCATCGGGAAGCTTCCAGGTTTTGCGATTCTCATGGACAGGCGTGAAGTACAGTTTGGGATTCAGATATTTCAACGAAGTTGGGCCTTGCCCTGTTTGCTGAAACACATAACATATTATATGTTGTATTGGCTAGGCCAACGCTTTTTGCTGCCCTAATTGTAGTTATGTTTAGAGAAAGAACAGATCAATTTGTTTACTCGAATAGATTTTAGTTCCTTGCTTTCTTTTCTTTTCCCCCTTCAATTCCAATGGCCTTTCGTACAGTTTCGCATGTTTGTACCTTGTAGAGCTAAATTTGTCATTATTGCCTATAAATAATTTTGCTTACCGCTGGCTATGGCATCTCTTATAGGATGCAAAAAAAAATTTATTTCAGTTTTTCCATTTGCACTTGCACCCCTT

mRNA sequence

ATGAGGAGCTGCGTTGGCCTCCAAAACTCAATTCATATGTTGCTCTCCTGGATACTACATAGCAACCTATGTTTTGCGATTCTCATGGACAGGCGTGAAGTACAGTTTGGGATTCAGATATTTCAACGAAGTTGGGCCTTGCCCTGTTTGCTGAAACACATAACATATTATATGTTGTATTGGCTAGGCCAACGCTTTTTGCTGCCCTAATTGTAGTTATGTTTAGAGAAAGAACAGATCAATTTGTTTACTCGAATAGATTTTAGTTCCTTGCTTTCTTTTCTTTTCCCCCTTCAATTCCAATGGCCTTTCGTACAGTTTCGCATGTTTGTACCTTGTAGAGCTAAATTTGTCATTATTGCCTATAAATAATTTTGCTTACCGCTGGCTATGGCATCTCTTATAGGATGCAAAAAAAAATTTATTTCAGTTTTTCCATTTGCACTTGCACCCCTT

Coding sequence (CDS)

ATGAGGAGCTGCGTTGGCCTCCAAAACTCAATTCATATGTTGCTCTCCTGGATACTACATAGCAACCTATGTTTTGCGATTCTCATGGACAGGCGTGAAGTACAGTTTGGGATTCAGATATTTCAACGAAGTTGGGCCTTGCCCTGTTTGCTGAAACACATAACATATTATATGTTGTATTGGCTAGGCCAACGCTTTTTGCTGCCCTAA

Protein sequence

MRSCVGLQNSIHMLLSWILHSNLCFAILMDRREVQFGIQIFQRSWALPCLLKHITYYMLYWLGQRFLLP
Homology
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BLAST of CmaCh07G000190 vs. NCBI nr
Match: KAG6594386.1 (Vacuolar protein sorting-associated protein 54, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 22   NLCFAILMDRREVQFGIQIFQRSWALPCLLKHITYYMLYWLGQRFLLP 70
            N  FAILMDRREVQFGIQIFQRSWALP LLKHITYYMLYWLGQRFLLP
Sbjct: 1021 NQGFAILMDRREVQFGIQIFQRSWALPYLLKHITYYMLYWLGQRFLLP 1068

The following BLAST results are available for this feature:
BLAST of CmaCh07G000190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G000190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G000190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594386.15.5e-1693.75Vacuolar protein sorting-associated protein 54, chloroplastic, partial [Cucurbit... [more]
BLAST of CmaCh07G000190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G000190.1CmaCh07G000190.1mRNA