
CmaCh06G017510 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTCCTGCCCTCGTTTCCACCTCCCCCATCACAACAACATCAACCTCATTCTCCCCGACGGCCATGTTCGAATCTACCACCGCCCCATCCACGTCTCTGACGTCTTGCTCGAATTCCCTTTTCATCTCATCTGCCGAGCCGACTCCTTCTACATCGGCCACAAGATCCCTCCCCTTGCCCCCCACCACCACCTCCAGCTCGGCCATAACTACTTCCTCCTCCCCAACCATTTTTTCCACTCCGTTCTCTCCTTCCTCACCGTTGCTTCCTTTTTCTCCTCTTCCACCAACAACAGAATCCACACCCCCTTCGAGATCCAACGGACCCCCTCCGGCTGCCTTCGAATCCACCTCTCCGACGACTTCATTTCCGGATTGCTCCAACAGGGCAACCCCAAACTCCAGGAGCCACTCGGCAGAATCTGCACCACGCCCCAATTGGCTAAGGACTACACCCGCCTCGTATACAGGCGCCAATGGAAGCCAAAGCTGGAGACCATTCGGGAGGGTGAAAAGAAAGGGGGTTCGCCGTTTCGCTTCAACAAGGGCAACCCATTTCCGTCTCTTTTAAAGCCGCCGCGGAACCCTTCCGCGGCATTGGCGTGGACCATATCGGCCAACCCCTTCCAGCTTGCTTATAAGACTAAGATTCGCATCAAATCGAGGGCTTAA ATGCCTTCCTGCCCTCGTTTCCACCTCCCCCATCACAACAACATCAACCTCATTCTCCCCGACGGCCATGTTCGAATCTACCACCGCCCCATCCACGTCTCTGACGTCTTGCTCGAATTCCCTTTTCATCTCATCTGCCGAGCCGACTCCTTCTACATCGGCCACAAGATCCCTCCCCTTGCCCCCCACCACCACCTCCAGCTCGGCCATAACTACTTCCTCCTCCCCAACCATTTTTTCCACTCCGTTCTCTCCTTCCTCACCGTTGCTTCCTTTTTCTCCTCTTCCACCAACAACAGAATCCACACCCCCTTCGAGATCCAACGGACCCCCTCCGGCTGCCTTCGAATCCACCTCTCCGACGACTTCATTTCCGGATTGCTCCAACAGGGCAACCCCAAACTCCAGGAGCCACTCGGCAGAATCTGCACCACGCCCCAATTGGCTAAGGACTACACCCGCCTCGTATACAGGCGCCAATGGAAGCCAAAGCTGGAGACCATTCGGGAGGGTGAAAAGAAAGGGGGTTCGCCGTTTCGCTTCAACAAGGGCAACCCATTTCCGTCTCTTTTAAAGCCGCCGCGGAACCCTTCCGCGGCATTGGCGTGGACCATATCGGCCAACCCCTTCCAGCTTGCTTATAAGACTAAGATTCGCATCAAATCGAGGGCTTAA ATGCCTTCCTGCCCTCGTTTCCACCTCCCCCATCACAACAACATCAACCTCATTCTCCCCGACGGCCATGTTCGAATCTACCACCGCCCCATCCACGTCTCTGACGTCTTGCTCGAATTCCCTTTTCATCTCATCTGCCGAGCCGACTCCTTCTACATCGGCCACAAGATCCCTCCCCTTGCCCCCCACCACCACCTCCAGCTCGGCCATAACTACTTCCTCCTCCCCAACCATTTTTTCCACTCCGTTCTCTCCTTCCTCACCGTTGCTTCCTTTTTCTCCTCTTCCACCAACAACAGAATCCACACCCCCTTCGAGATCCAACGGACCCCCTCCGGCTGCCTTCGAATCCACCTCTCCGACGACTTCATTTCCGGATTGCTCCAACAGGGCAACCCCAAACTCCAGGAGCCACTCGGCAGAATCTGCACCACGCCCCAATTGGCTAAGGACTACACCCGCCTCGTATACAGGCGCCAATGGAAGCCAAAGCTGGAGACCATTCGGGAGGGTGAAAAGAAAGGGGGTTCGCCGTTTCGCTTCAACAAGGGCAACCCATTTCCGTCTCTTTTAAAGCCGCCGCGGAACCCTTCCGCGGCATTGGCGTGGACCATATCGGCCAACCCCTTCCAGCTTGCTTATAAGACTAAGATTCGCATCAAATCGAGGGCTTAA MPSCPRFHLPHHNNINLILPDGHVRIYHRPIHVSDVLLEFPFHLICRADSFYIGHKIPPLAPHHHLQLGHNYFLLPNHFFHSVLSFLTVASFFSSSTNNRIHTPFEIQRTPSGCLRIHLSDDFISGLLQQGNPKLQEPLGRICTTPQLAKDYTRLVYRRQWKPKLETIREGEKKGGSPFRFNKGNPFPSLLKPPRNPSAALAWTISANPFQLAYKTKIRIKSRA Homology
BLAST of CmaCh06G017510 vs. TAIR 10
Match: AT1G28190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). ) HSP 1 Score: 126.7 bits (317), Expect = 2.3e-29 Identity = 74/175 (42.29%), Postives = 102/175 (58.29%), Query Frame = 0
BLAST of CmaCh06G017510 vs. TAIR 10
Match: AT5G12340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17 Identity = 61/172 (35.47%), Postives = 90/172 (52.33%), Query Frame = 0
BLAST of CmaCh06G017510 vs. TAIR 10
Match: AT5G17350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04 Identity = 29/88 (32.95%), Postives = 42/88 (47.73%), Query Frame = 0
BLAST of CmaCh06G017510 vs. TAIR 10
Match: AT3G03280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.6 bits (96), Expect = 9.8e-04 Identity = 23/62 (37.10%), Postives = 32/62 (51.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|