CmaCh06G017500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SNARE associated Golgi protein family
Location	Cma_Chr06: 10684879 .. 10688765 (-)
RNA-Seq Expression	CmaCh06G017500
Synteny	CmaCh06G017500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGGCACAAGGCGTTTACCTTATCGAAATTTTGTAAAATCGTAGTGCAAGTTTTTTACTAAAAAAATTGATTGTATATGTGTGGAATATTACGGTCCATCCAACGCAATCATTTCACGTTTCCAAATACCGAATCTATTTTGTGGTCGGTGGTAGTCTCCGCCCTGAACGGTTTTTAACCGGAATCAAATCTCCAGGAAGATGGGATCTGGGTGGGGACGGTGGTTCAAATTAGCCGCCGTAGTGGCGGTGCTGGCGATTTTGAGAGAGTTAGGGAAGCGATACGGATGGGAAATTGACAGAGAAGCGGCTCTCAAGGTGTTCGACCAATGGTCCGATCGATTGGGGATATGGGCCATGCCTGCGTATGTCGGCATCCATACCTTCACACTTGCTCTCTGTTTGCCCTACGCTGTATTCTTTGAGGCCACTGCTTCTTTGCTCTTCGGCTTCTTCCCCGCCGTGATTTGCGTTTTCTGTGCCAAGGTGCTTGGGGCTTCCCTTTCCTTCTGGATCGGCAGGTTTGATCTAACATTTCCTTTTTCTTGTCTGATTTCCTCTTATTCAGTACTGAGATTATGCAAGGCTTCCGACGTTCTCTGATGTGAAATTGTGTGTTCATGGTATGGAATTAAGTTCGGAATTTTCTTGCTGTAGTTTTAGATATGTTTGTTGATTGGGGATTTTATATGTCTTATCTTACAATTTTACGTTGGATTCCCTGAAATGGATTATTTTTCCCTGATGCTGTATTTGAGGATAGAAGTTGATTGACGTTTTTAGTCTATATAGATAAGTGAAAGGATTGAAGTTTTGTTAAATTTCTTGTGTTCCACATGGTTGAGAGAATAGTTGGTGCTTACTATTTGTTGTAAGCTGTTCTGTTTGGTGAATAATGAGAGTAGAAAGCTCGTCTATGATTCGGGCTGTGGCGTGGTAGGGGAAATCATATGCCACGACTTAATAGTTTTTATATTATTTTGAAACAGAAACAGAAACAGAAACAGAAACTTTTCATTAGTATAGTTTTTTTTTATGAGAATTCTACTCTGTATTGACTAAACAAACTGTACGGAGATGAGAAATCCTATTTTGCCCCAATTGGAATAGATCATCACCATGTTGTGTAGTTAGAACTTTTTTTTAGATAAAGTGCACCAATTAGAGAATAAGTATATAACTAGGCCCCTCAAGTCACATCTTTAAACACCCTTTAATTTCTTTAAAACCACAACCTCCAAGGTAACTCATGATAGCATTCTACAAAGAATCATTGCTTGATCTATAAAGGGGAAGACTCGCCCTAATACAAACCACATTATCCAACCTCCCCACCTAATGCATTTCTCTATTCGAAATGCCACAAAAAGGGACTTTGGATATAGAAAGATTATTTAGAAACTATTTGTGGAAAGATGGTTGACACCTTGTTCGATGGAATTTTATGAACCTCTCAACAGAAAAGGGAGACCTCGGTCTTTTCTCGATAAAGAAGAGGAACAAGACTCTCCTCGCAAAATGGATATTGAGATATCATCATCAAGAAAATGTTTTATGGAGAAATCTTATAAAGGCTAAATATACTCATATATCAGTCAAAAATCAACCCTTCCATCATCTGCAAAAGGACCTTGGAAGTACATAAAGAAACATTAAAACCTCATCGGTGAGTGATGGAGGAAGCACATCATTTTGGACCGACCCATGGATTGAAAACACCATGCTGGTTCTGCCGTATCCACTTTTGTACAAGCTCTCTCATTGCAAAAAAACCACGATCAAAGAAACATGGATTGTTGTTAACGAATTTTGGGACTTGAACTGTGGTAAGAATTTAAAGGATATGAAGCAACGGAATGGGTCGAATTAAGCCTTGAACTTTCTCTAGTGGTATTGTCAAACGAAGCAGACTTATTGACTTAGTTCCCCTAGCGCTGACGGGGTCTTCTCTACAAAATCCTTGATGATGGACATGGGGGAAAGTAGAAGTAATAAATCTCACGATAGCAAAGACAATATGGAAAGGACATCACCCTGAATAGGTGAAAATTTTCCTTTGGGAAATAGCACATAAAAGCCCAATTAGCACAAGCAAAAATCTTCAAAAAAAGAAGGTCTTACATTACTCTTTCTCCATATTGGTGTCCATTATGCAGGAAAGAAAATGGATCACAAATCCACTTATTTATGCAATGCACATACGCTTAGAATTTTTGGACAACGATTCTCAATGTATTCGGATGACATCTCACATTTCCTAGGGAGGTAAAGAATCTATTGGACATGGCCTTAATGTACCACTCATTCAAGAATGCGAAAGCCCTATTATGGAATAACCTCATCATGGCTTTCTTTTGGAATATGTGGAAAGAAAAAAATCAAAGAAAAAAACACGAACTTATACAAAACTCTTCGACAATGTTGTTTACCAAACTATATCTTGGTGTAAGCTGTCTAATATTTTACTTCCTATTGTTATACCTCCCTCATTTTAGAGGAGTACCAACGGAGGTTAAATTTATTAAATAACTTCCCCCAACTTGTAGCTTCAAAGGAGCCATGAAAGTAGAGGCGAGTCCAGTCATCTAATGTATTTTATGAAAGGAGCACAAACTTATGGACAAAATATTGTGAGGAAACATTTCCCACTCTTTGTTGCTAGTGTCCAACCGATCTTGGAATTTTAGACTTCCAAATAGCCTTGTCCAGCAGCTACCAAGGATTCGTTTCCTTTGGAAGAGACCTAAATACACGTATTTTAGAGGCAGGGGAACCACTGATCTTTGAAAAGACAGGACTCCCTCCATTGATGAGCTTTTCTGTGGCGAGCTTCCTTGAATGGATGCGAAGAGCAGTGAATTCCTAACCTGCAAGTTGGTGTTTATATCCGACCCACCTTGAGGGCAAAAAAAGGCACTCTTTTTCAAGTTTAGCAGAAAACAGAGGAATTTTATGATGTGATGAAAAAAAATGAGTTGGAAGGCAGTTTGAGAAGTTCATTGCTCTATATACGTAATTTATAAGTTGTTGCCCCATCTAGAAACATGTCCTGAAATGTTTGAAGTGTCTGGTGTTATGAATTTCTATTATCCAACATCTCAATCCGGTGTTATGAATTTCTATTATCCAACATCTCAATCCAAGGTCATGTTTTGTTCAGGTTACTTTTTAGGAATTCAAGTTCAGCTATGGAGTGGGCCCAGAGGAATAAATACTTCCATCTTCTTTGTAGAGGAGTAGAGCAAGATGGTTGGAAGTTTGTCCTTCTTGCCCGCTTTTCTCCAATTCCCTCATACGTTATAAACTATGCTCTTGCTGCAACCAAAGTGGGGTTCTTTCTAGATTTTCTGGTGCCAACTGTGATGGGATGCTTGCCAATGATACTTCAGAATACGTCAATTGGCAGTCTTGCTGGTGCTGCAGTTGCTTCAGCCTCTGGGTCTCAGAAATCTCAGATATGGTCATACATTTTTCCTGTACTTGGTATTGGATCCAGCATTCTTATTTCCTGGAGGATTAAAAAGTACTCTACTGGACTCGCAGTGCCTGAAAGTTCCTCTACTGTTGACCCATCTAAAACCAAAGTACTGTAGTCATACTTTTTCTTTTCTTTCTTAAGACATTTCCGGCTTTTGATTTATGAGTCCCGGAGGTTTTATTATAATCTTCATCAGTGTTACAACACAAGACATAATCTCCAAGTTGAGAGGGAGCAAAGAAAAATGTCCACTCGTATTGTTGTTTAGAGTGCCGAGGAAAGAAAAATGTCCACATTTTCTTCATTCATTTTGGTGTGCCTTTAGTAAGGTCGAGTAAAATTAAATTATGCGTGAAATTATGCATGCATAAACCTTGTTTGTATTTGTATTTTCAAAGAGAAACACCA

mRNA sequence

CTTAGGCACAAGGCGTTTACCTTATCGAAATTTTGTAAAATCGTAGTGCAAGTTTTTTACTAAAAAAATTGATTGTATATGTGTGGAATATTACGGTCCATCCAACGCAATCATTTCACGTTTCCAAATACCGAATCTATTTTGTGGTCGGTGGTAGTCTCCGCCCTGAACGGTTTTTAACCGGAATCAAATCTCCAGGAAGATGGGATCTGGGTGGGGACGGTGGTTCAAATTAGCCGCCGTAGTGGCGGTGCTGGCGATTTTGAGAGAGTTAGGGAAGCGATACGGATGGGAAATTGACAGAGAAGCGGCTCTCAAGGTGTTCGACCAATGGTCCGATCGATTGGGGATATGGGCCATGCCTGCGTATGTCGGCATCCATACCTTCACACTTGCTCTCTGTTTGCCCTACGCTGTATTCTTTGAGGCCACTGCTTCTTTGCTCTTCGGCTTCTTCCCCGCCGTGATTTGCGTTTTCTGTGCCAAGGTGCTTGGGGCTTCCCTTTCCTTCTGGATCGGCAGGTTACTTTTTAGGAATTCAAGTTCAGCTATGGAGTGGGCCCAGAGGAATAAATACTTCCATCTTCTTTGTAGAGGAGTAGAGCAAGATGGTTGGAAGTTTGTCCTTCTTGCCCGCTTTTCTCCAATTCCCTCATACGTTATAAACTATGCTCTTGCTGCAACCAAAGTGGGGTTCTTTCTAGATTTTCTGGTGCCAACTGTGATGGGATGCTTGCCAATGATACTTCAGAATACGTCAATTGGCAGTCTTGCTGGTGCTGCAGTTGCTTCAGCCTCTGGGTCTCAGAAATCTCAGATATGGTCATACATTTTTCCTGTACTTGGTATTGGATCCAGCATTCTTATTTCCTGGAGGATTAAAAAGTACTCTACTGGACTCGCAGTGCCTGAAAGTTCCTCTACTGTTGACCCATCTAAAACCAAAGTACTGTAGTCATACTTTTTCTTTTCTTTCTTAAGACATTTCCGGCTTTTGATTTATGAGTCCCGGAGGTTTTATTATAATCTTCATCAGTGTTACAACACAAGACATAATCTCCAAGTTGAGAGGGAGCAAAGAAAAATGTCCACTCGTATTGTTGTTTAGAGTGCCGAGGAAAGAAAAATGTCCACATTTTCTTCATTCATTTTGGTGTGCCTTTAGTAAGGTCGAGTAAAATTAAATTATGCGTGAAATTATGCATGCATAAACCTTGTTTGTATTTGTATTTTCAAAGAGAAACACCA

Coding sequence (CDS)

ATGGGATCTGGGTGGGGACGGTGGTTCAAATTAGCCGCCGTAGTGGCGGTGCTGGCGATTTTGAGAGAGTTAGGGAAGCGATACGGATGGGAAATTGACAGAGAAGCGGCTCTCAAGGTGTTCGACCAATGGTCCGATCGATTGGGGATATGGGCCATGCCTGCGTATGTCGGCATCCATACCTTCACACTTGCTCTCTGTTTGCCCTACGCTGTATTCTTTGAGGCCACTGCTTCTTTGCTCTTCGGCTTCTTCCCCGCCGTGATTTGCGTTTTCTGTGCCAAGGTGCTTGGGGCTTCCCTTTCCTTCTGGATCGGCAGGTTACTTTTTAGGAATTCAAGTTCAGCTATGGAGTGGGCCCAGAGGAATAAATACTTCCATCTTCTTTGTAGAGGAGTAGAGCAAGATGGTTGGAAGTTTGTCCTTCTTGCCCGCTTTTCTCCAATTCCCTCATACGTTATAAACTATGCTCTTGCTGCAACCAAAGTGGGGTTCTTTCTAGATTTTCTGGTGCCAACTGTGATGGGATGCTTGCCAATGATACTTCAGAATACGTCAATTGGCAGTCTTGCTGGTGCTGCAGTTGCTTCAGCCTCTGGGTCTCAGAAATCTCAGATATGGTCATACATTTTTCCTGTACTTGGTATTGGATCCAGCATTCTTATTTCCTGGAGGATTAAAAAGTACTCTACTGGACTCGCAGTGCCTGAAAGTTCCTCTACTGTTGACCCATCTAAAACCAAAGTACTGTAG

Protein sequence

MGSGWGRWFKLAAVVAVLAILRELGKRYGWEIDREAALKVFDQWSDRLGIWAMPAYVGIHTFTLALCLPYAVFFEATASLLFGFFPAVICVFCAKVLGASLSFWIGRLLFRNSSSAMEWAQRNKYFHLLCRGVEQDGWKFVLLARFSPIPSYVINYALAATKVGFFLDFLVPTVMGCLPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGSSILISWRIKKYSTGLAVPESSSTVDPSKTKVL

Homology

[Close]

BLAST of CmaCh06G017500 vs. TAIR 10
Match: AT1G44960.1 (SNARE associated Golgi protein family )

HSP 1 Score: 321.2 bits (822), Expect = 7.2e-88
Identity = 159/240 (66.25%), Postives = 194/240 (80.83%), Query Frame = 0


Query: 7   RWFKLAAVVAVLAIL-RELGKRYGWEIDREAALKVFDQWSDRLGIWAMPAYVGIHTFTLA 66
           +W  +AA VA++AI+ R+   +YGW  ++EAAL+   +WSDRLGIWA+P YV +HT TLA
Sbjct: 3   KWLAIAATVAIIAIIVRQGTTQYGW--NKEAALEKLKEWSDRLGIWAIPTYVAVHTITLA 62

Query: 67  LCLPYAVFFEATASLLFGFFPAVICVFCAKVLGASLSFWIGRLLFRNSSSAMEWAQRNKY 126
           LCLP+AVFFEA AS+LFGF PA++CVF AKVL AS SFWIGR +F++S+ A  WA  NKY
Sbjct: 63  LCLPHAVFFEAGASMLFGFLPALLCVFSAKVLAASFSFWIGRFVFKSSTRATGWAHSNKY 122

Query: 127 FHLLCRGVEQDGWKFVLLARFSPIPSYVINYALAATKVGFFLDFLVPTVMGCLPMILQNT 186
           F++L RGVE+DGWKFVLLARFSPIPSYVINYALAAT+V F  DFL PTV+GCLPMILQN 
Sbjct: 123 FNILSRGVERDGWKFVLLARFSPIPSYVINYALAATEVRFVADFLFPTVIGCLPMILQNA 182

Query: 187 SIGSLAGAAVASASGSQKSQIWSYIFPVLGIGSSILISWRIKKYSTGLAVPESSSTVDPS 246
           S+GSLAG AVAS +G QKSQ+W Y+FPVLGI SS+LIS RIKKYS G+    S ++ + S
Sbjct: 183 SVGSLAGMAVASVAGKQKSQVWGYVFPVLGILSSVLISLRIKKYSAGITEASSDTSANNS 240

[Close]

BLAST of CmaCh06G017500 vs. TAIR 10
Match: AT1G22850.1 (SNARE associated Golgi protein family )

HSP 1 Score: 45.1 bits (105), Expect = 9.9e-05
Identity = 46/190 (24.21%), Postives = 83/190 (43.68%), Query Frame = 0


Query: 11  LAAVVAVLAILRELGKRYGWEIDREAALKVFDQWSDRLGIWAMPAYVGIHTFTLALCLPY 70
           LA V+ +  +    G  Y +       L  F  + +  G      ++ ++     L +P 
Sbjct: 111 LAGVLLIGTVGGFAGVGYVYRDQINTFLTQFSTYIEGYGTAGYALFIAVYAGLEILAIP- 170

Query: 71  AVFFEATASLLFGFFPAVICVFCAKVLGASLSFWIGRLLFRNSSSAMEWAQRNKYFHLLC 130
           A+    +A LLFG     I V  +  + AS++F I R   R     ++  + NK F  + 
Sbjct: 171 ALPLTMSAGLLFGPLIGTIIVSISGTMAASVAFLIARYFAR--ERILKLVEDNKKFLAID 230

Query: 131 RGVEQDGWKFVLLARFSP-IPSYVINYALAATKVGFFLDFLVPTVMGCLPMILQNTSIGS 190
           + + ++G++ V L R SP +P  + NY    T V  F+ +++ + +G LP      S G+
Sbjct: 231 KAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVK-FVPYVLGSWLGMLPGSWAYVSAGA 290

Query: 191 LAGAAVASAS 200
              A +   S
Sbjct: 291 FGRAIIQEES 296

The following BLAST results are available for this feature:

BLAST of CmaCh06G017500 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G017500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44960.1	7.2e-88	66.25	SNARE associated Golgi protein family	[more]
AT1G22850.1	9.9e-05	24.21	SNARE associated Golgi protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032816	SNARE associated Golgi protein	PFAM	PF09335	SNARE_assoc	coord: 68..189 e-value: 1.3E-20 score: 74.0
None	No IPR available	PANTHER	PTHR47699	SNARE ASSOCIATED GOLGI PROTEIN FAMILY	coord: 6..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017500.1	CmaCh06G017500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane