CmaCh06G017410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 10640401 .. 10642829 (+)
RNA-Seq Expression	CmaCh06G017410
Synteny	CmaCh06G017410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATAAATAAATAAATAACAAAGTTAGTCGTCATTTATTTATTTTTATAATTTGGGCAATATAAAATTGATCCATTTTAAAAATCGAGTATAAATCGGCTCCATTCTCTCGTATTCTGGCGCGCTAAATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGGTAAGAGTCTGTCGAACTCTATTTTTTCCATCTTTAGAATGCTCCATATCATTATTCATTTGATCTTGCTGTTCTTCATTCATTATGCAATTACTTCAAGTTGTCCTAACATTCGATCATCTCAGTTTAGTAAAACTGACGCTTGAATCAACTTCACTGAAAAATATGGCTGATGATGAACAGTTTAGTATCGATTCCTTGTGAAACCTAGAGTTTTAGCCTTTTTTTTTTTTTTCCTTTCCAAATTTTGGTATTGGAAATCAGAATGATTCCTTGTTTAACGTGTCGTGGTGTACATTTTTGAAGTTCATTTGAATAGGCAAGACGAAAAAGTCGAATAATCGTCTACTCGTGGCAATTTTGTAGTCAACACTGTTTTTTTTTAATTTTTTGCGACTGCTGAATGTCTTGCGCCTCCTAGCTGCTATGCTATCAAGAAGAATTTCAAGGTCTGGATGTGTGTAGCATGACGTTAGGGGACGAATACTGGAACTTTTGTTCTAACTTGAGCCTTTTTGTACATCTATTTCAGAGTGTTAACTATTAGACGCTTACTACTGCCCGTCCGGGTCCAAAATCTGTTAATCTTATCTCCAAATTCTGTTTACTACGCGTTCAATCTATCTACCTCTTGTCGTATGAGTATCCCTCTCTGTGAAGCACATGGCAACGACAAATCCTTACAATGAAGTTTTTTAGGTTCTTCTCAATATACGAATATTTTTGTATAAATAACTTCTCACCTTGCTACAGTTGATTGATAAACAATTGCATATTTGGAATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTGTATGTTTACTCTTTTTTCTATGTCGTTATTTATCATGCCATTGCCAATGGAAATGAGAAATTACATTTCCTCAGATGGGAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATTGAAAGCTTCACACAACTGGTAGGTGGTGGCTATGACCAATCTTTTTGAGCTGGCAATATGAGCTCGGTGTTAGGAGTGAGACCAAAATCCCACATTGACTAGATATAAAAAAAAGATCACGAGTATATAAGTGAGAGACATTATCTTTATTGATATGAGATTTGTTTTTTTTTTTTCTGTGAAATCAAAAGTAGAGTCACATGGGCTAATGTCCTAAAAGTATAGGATATTATATGAATATGAAAATATGTGTGGAAATATGTGAAGGGAAGTAGCTAGAACTTGGGTTATATTGCAATAGTATGTATTGTTTTCAAGTTTTTGTTTGGCTGCAAATATTTTCTACTGATCCACATTAATTTTTTCTTAATGAAGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCGTGAGTTGAAACTACAATATATACCTTCAAACATTTTTGTTGAGAACTACTTTATTAACTTAATTACTGTTCTTTCTTTCATTCTTCCCAGCATCCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTTTGAAGGTAATTTCAAGCAGGGCTATTTTTTTTTTTCCAGCTTTGGAAAATTGATTCGAACCATGATTGAAAAGCTAGGCTAGAAGAGGTGTCTACATCAAGGAAGCAACTTAGTGCCATGAAACCTAGTAGAAAAGTTCTATATTTAGTGTTAACGAATAGCCATGCATGCTCATTTTTATCTTTAAACTTCGATCAAAATCATGCATATATCAAAACTGTGAAACGAGTGATATACTAACTGAGTTGTCTATTTGCTTGGTTTTGTGTTTTAGGCGAAGATGGAAAATCATGTAGTTAATTGTAACCCTGACAAACTGTTGTTTTTTTTTTTTTTTGTTTTTTAATAGAGAATGTCATGGTCCAAGAGTAAGGATAGAGGTTGAATAGAGATTTGAAAATTTAACTTTCGAGGAATAGAGGTTGAATGGAGATTTGAAAATTGAACTTTCGGGATACATGTATAATATAAAATGGACAATTGAAATGAGTTTGTTTGTGATACATAATCTTGATATTTTAACCCTAAATCTAAATACCTTGTATAAGAGATTGTA

mRNA sequence

AAAAATAAATAAATAAATAACAAAGTTAGTCGTCATTTATTTATTTTTATAATTTGGGCAATATAAAATTGATCCATTTTAAAAATCGAGTATAAATCGGCTCCATTCTCTCGTATTCTGGCGCGCTAAATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGTTGATTGATAAACAATTGCATATTTGGAATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTATGGGAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATTGAAAGCTTCACACAACTGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATCCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTTTGAAGGCGAAGATGGAAAATCATGTAGTTAATTGTAACCCTGACAAACTGTTGTTTTTTTTTTTTTTTGTTTTTTAATAGAGAATGTCATGGTCCAAGAGTAAGGATAGAGGTTGAATAGAGATTTGAAAATTTAACTTTCGAGGAATAGAGGTTGAATGGAGATTTGAAAATTGAACTTTCGGGATACATGTATAATATAAAATGGACAATTGAAATGAGTTTGTTTGTGATACATAATCTTGATATTTTAACCCTAAATCTAAATACCTTGTATAAGAGATTGTA

Coding sequence (CDS)

ATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTATGGGAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATTGAAAGCTTCACACAACTGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATCCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTTTGA

Protein sequence

MESNGTEFTGKRMKLAMGEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQNGHIQF

Homology

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BLAST of CmaCh06G017410 vs. TAIR 10
Match: AT5G03050.1 (unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-30
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 11  KRMKLAMGEQGKDTSMSNIS-----ENEQCETDIRGSEEMESNIARLLEKIESFTQLVSE 70
           KRM+ A  E+GK  S   IS     ENE+ ET +  S+EME +IA++L+KIESFTQ VS 
Sbjct: 16  KRMR-ASDEEGKGDSRDGISLDHTIENEEAETKLVASDEMELSIAQILDKIESFTQTVSN 75

Query: 71  LLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQ 130
           LLE+GKT  K+LSNEFEE++I IHK +VE+WQ EIKELRLLD+SNEE +++L NAR L+Q
Sbjct: 76  LLETGKTMLKELSNEFEERLIMIHKEHVEKWQDEIKELRLLDASNEETTSLLHNARYLIQ 135

The following BLAST results are available for this feature:

BLAST of CmaCh06G017410 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G017410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03050.1	1.6e-30	59.20	unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..69
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	PANTHER	PTHR35500	OS03G0108700 PROTEIN	coord: 1..130
None	No IPR available	PANTHER	PTHR35500:SF1	OS03G0108700 PROTEIN	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017410.1	CmaCh06G017410.1	mRNA