CmaCh06G017380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	thioredoxin-like 1-1, chloroplastic
Location	Cma_Chr06: 10627661 .. 10630466 (-)
RNA-Seq Expression	CmaCh06G017380
Synteny	CmaCh06G017380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATCAATGCGACGTTGCGTGCGCCTCTTATCCACTCGCAATTCCCCACAATCCTCGTTGTTATTCGCCCAACCGCTCCGCCTTTCATTCCCATTCCTTCACCTACAAACGCCTCGCCTCCCCTCTCCCTCGTCTTCTTCAATTCATGACAACGCCCCCTTTTCGATCCCGATCATCTCGTTCTTCAACATCCTATACAATCATCCTATCCCCACTTCAATTTCCCACAATTTCCCACCAACCCCACTTCCCAATTCCTCTTACCCTCTTCAATCCAAGCGATTTCAACAGATTTGTCCTCGATTTTAATGGCCGACGCTCTCAGCAAGATCAGTTTTTCCCCCTCTCGCCCTTCCTTTTCTCCTCACCATCTTCCTCCGCCGATTTATGGCCTTAAATCCGTCATTTCTTCTTCGAATCCCTCGACTTGGAAACGGCTTTCTCTGAAATTACCATCCGCTTCGCTGTCTTTTTCGAGCCGTGACTCCTATGGCGAAAGAATTCAGTTTAGAGAAGCTAAGGTCATCTCCAGGAATTCTACTTCTCCTACACGGTCTTCGACGATATCCCATGTTGGTACCTGTATTCTTCATATCCTTGTGTTTTTTCCCTTTCCTATGATATTATTAAGGTTTTTGTTTCTAACATTCAGCTTTTTCTGTCATTTTATTATATGTTTCCCTTCGGTTGGATTTTCTTTATAAATTTATTTGTATCATTAGGTTTTCTGTGTTTAATTTTATTGGATTCTGAATAGGAAACTTAGCTGTGTCTTGTTGTTTGTGATCTGGGTTACTATGAACAGAACTAGTTACTGTATCCCTATGTTTGCTTATCCTTGATTAGCACTTGATTATGTCCATAATCTATTATCCATTTTGTTTGTTAACTCTTGTGTTGGTGTCTAATAGAGTGGGTTTCGAACTCCAAAAGCTCAGAAATGGTGGGAAAGGGGGTTAGAAGCTAATATGAAAGAGGTGAGCAGTGCAGAGGAGCTTGTGGATTCTCTTTTAAATGCCGGGGACAAGCTTGTTATTGTGGATTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCAAAGGTCTCCTTTATGCTTTATTGTGTAGAAAGAACAATGTGTATGTTCCAAGTTTTACGAGTCTTGAAAAGGTTCGTATATCTATCCTCTGCAGATATGCCAATTTGCTGAGATGAATCCAGAAATCCAATTTTTGCAAGTGAACTATGAAGAGCACAAATCTATGTGTTATAGTCTTGGTGTGCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACTAATGCAACGGTAACAAATCTTTAAATACATTGGAACTGTTCTGCTTTTGTAATGTTATCCTATCATTATCATTCATAATATTGATTGTGGCTGTACATTCTTTTATAGAAGCATGCTCTTCCTTTATTTCCATTTTAATTGTTGTTTAATCACATTTGAAGTGTTTTTGTGAGATTCCACATCGGTTGGAGTAGAAAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTACCAGATACATTTTAAAGCCGTGAGGCTGACGGCGACACGTAACGGGCTAAAGCGGACAATATCTATTAGCGGTGGGTTTAGGTTGTTACAAATGGTATTAGAGCCAGACACTGGATGGTGTGCCAGCGAGAACGGTGGGCCCCAAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAAACGAAAACGAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAACATATGCACTTTAAAACCGTGAGGCTAACAAGCCAAAGCGGATAATATTTAATGGGTTTAGGCTGTTATTGTTTTAGTCGAAGTAGATCTGTTTGTGCTTCAAGTATCAAATCTCCTATTGTGGATTATTTCCCAAGAGATGTCCATTTAACCAGTCCCAGTCCCGTAGAGAATCTCCGCTTAAACAGAGAATGGGGGAGGGAGGGAGAGATATTTCTCCCTATTAATTAAATGGAGCCGTATGTTTCCCATCCCTGACGAGAATTTTGCAAGGATGGAGATGGAAATAGTACAGACATCCCTACGTCTCTTCTACATCTGCCTCATGAGTATCAAATGTGTGGTTTGTCTCTACTAGTTTACGTGTTATTGTAGATGGTAGAGTGATAAAGAATTGGTTTGGTATGACAGATAAAGAAATTCAAGGATGCATTAGCCAAGCACAACACGGACCGATGCAGCCTCGGCCCGACCCGAGGGTTGGAGGAGAAAGAACTCGTGGCACTTGCCGCTAACAGAGAGCTCTGTTTCAACTACACCCCAAAGGCAGCAGAAGAGGTGCCCATCCCCATCACCATCCATCCCCGTGCCCATGCTGGAAGTGTAAAAATATCAGAATCAGAGCCATCGCGTCTTCCTCTACCCTCAACCATCCTGAAGTCTGCTGCTCAAACCTCCAAGGGCAATGCCTATGTGGGATGAAGCATCCTATCCTATCCTTAATACCTGTGCTCTTCTTGCCTGTAAAGATAATAGATGCACCAAATTTGTAGGGTTTTCTTTTTTGACTTGGATCCCTACCTCTGCTGGTTCCTTCCCAATATCAGCAACCAGCTGTGTGATTAATATTTATACATATATAGTGTTACCCGTTGTCTCTACACGGTTGTATAAACCTTCTCTGTAAAGTTATGAATACAGAACTTGTGAAAGATTGTAATTACTCAAATAATCAAGAAACTTATGAGTACCATTCATATGATTCAGTGATATCAACTTCTTTAACC

mRNA sequence

GAAATCAATGCGACGTTGCGTGCGCCTCTTATCCACTCGCAATTCCCCACAATCCTCGTTGTTATTCGCCCAACCGCTCCGCCTTTCATTCCCATTCCTTCACCTACAAACGCCTCGCCTCCCCTCTCCCTCGTCTTCTTCAATTCATGACAACGCCCCCTTTTCGATCCCGATCATCTCGTTCTTCAACATCCTATACAATCATCCTATCCCCACTTCAATTTCCCACAATTTCCCACCAACCCCACTTCCCAATTCCTCTTACCCTCTTCAATCCAAGCGATTTCAACAGATTTGTCCTCGATTTTAATGGCCGACGCTCTCAGCAAGATCAGTTTTTCCCCCTCTCGCCCTTCCTTTTCTCCTCACCATCTTCCTCCGCCGATTTATGGCCTTAAATCCGTCATTTCTTCTTCGAATCCCTCGACTTGGAAACGGCTTTCTCTGAAATTACCATCCGCTTCGCTGTCTTTTTCGAGCCGTGACTCCTATGGCGAAAGAATTCAGTTTAGAGAAGCTAAGGTCATCTCCAGGAATTCTACTTCTCCTACACGGTCTTCGACGATATCCCATAGTGGGTTTCGAACTCCAAAAGCTCAGAAATGGTGGGAAAGGGGGTTAGAAGCTAATATGAAAGAGGTGAGCAGTGCAGAGGAGCTTGTGGATTCTCTTTTAAATGCCGGGGACAAGCTTGTTATTGTGGATTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCAAAGATATGCCAATTTGCTGAGATGAATCCAGAAATCCAATTTTTGCAAGTGAACTATGAAGAGCACAAATCTATGTGTTATAGTCTTGGTGTGCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACTAATGCAACGATAAAGAAATTCAAGGATGCATTAGCCAAGCACAACACGGACCGATGCAGCCTCGGCCCGACCCGAGGGTTGGAGGAGAAAGAACTCGTGGCACTTGCCGCTAACAGAGAGCTCTGTTTCAACTACACCCCAAAGGCAGCAGAAGAGGTGCCCATCCCCATCACCATCCATCCCCGTGCCCATGCTGGAAGTGTAAAAATATCAGAATCAGAGCCATCGCGTCTTCCTCTACCCTCAACCATCCTGAAGTCTGCTGCTCAAACCTCCAAGGGCAATGCCTATGTGGGATGAAGCATCCTATCCTATCCTTAATACCTGTGCTCTTCTTGCCTGTAAAGATAATAGATGCACCAAATTTGTAGGGTTTTCTTTTTTGACTTGGATCCCTACCTCTGCTGGTTCCTTCCCAATATCAGCAACCAGCTGTGTGATTAATATTTATACATATATAGTGTTACCCGTTGTCTCTACACGGTTGTATAAACCTTCTCTGTAAAGTTATGAATACAGAACTTGTGAAAGATTGTAATTACTCAAATAATCAAGAAACTTATGAGTACCATTCATATGATTCAGTGATATCAACTTCTTTAACC

Coding sequence (CDS)

ATGGCCGACGCTCTCAGCAAGATCAGTTTTTCCCCCTCTCGCCCTTCCTTTTCTCCTCACCATCTTCCTCCGCCGATTTATGGCCTTAAATCCGTCATTTCTTCTTCGAATCCCTCGACTTGGAAACGGCTTTCTCTGAAATTACCATCCGCTTCGCTGTCTTTTTCGAGCCGTGACTCCTATGGCGAAAGAATTCAGTTTAGAGAAGCTAAGGTCATCTCCAGGAATTCTACTTCTCCTACACGGTCTTCGACGATATCCCATAGTGGGTTTCGAACTCCAAAAGCTCAGAAATGGTGGGAAAGGGGGTTAGAAGCTAATATGAAAGAGGTGAGCAGTGCAGAGGAGCTTGTGGATTCTCTTTTAAATGCCGGGGACAAGCTTGTTATTGTGGATTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCAAAGATATGCCAATTTGCTGAGATGAATCCAGAAATCCAATTTTTGCAAGTGAACTATGAAGAGCACAAATCTATGTGTTATAGTCTTGGTGTGCATGTGCTGCCCTTCTTTCGCTTCTACAGAGGTGCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACTAATGCAACGATAAAGAAATTCAAGGATGCATTAGCCAAGCACAACACGGACCGATGCAGCCTCGGCCCGACCCGAGGGTTGGAGGAGAAAGAACTCGTGGCACTTGCCGCTAACAGAGAGCTCTGTTTCAACTACACCCCAAAGGCAGCAGAAGAGGTGCCCATCCCCATCACCATCCATCCCCGTGCCCATGCTGGAAGTGTAAAAATATCAGAATCAGAGCCATCGCGTCTTCCTCTACCCTCAACCATCCTGAAGTCTGCTGCTCAAACCTCCAAGGGCAATGCCTATGTGGGATGA

Protein sequence

MADALSKISFSPSRPSFSPHHLPPPIYGLKSVISSSNPSTWKRLSLKLPSASLSFSSRDSYGERIQFREAKVISRNSTSPTRSSTISHSGFRTPKAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTDRCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVKISESEPSRLPLPSTILKSAAQTSKGNAYVG

Homology

[Close]

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot
Match: O64654 (Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-80
Identity = 159/254 (62.60%), Postives = 189/254 (74.41%), Query Frame = 0


Query: 35  SSNPSTWKRLSLKLPSASLSFSSRDS-----YGERIQFREAKVIS-RNSTSPTRSSTISH 94
           S +P ++    LK   + L   S+       YG++I F +++  S R S++ T  +T+  
Sbjct: 25  SFSPVSFGGFGLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSAITAQTTL-- 84

Query: 95  SGFRTPKAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKI 154
              R   AQKWWE+GL+ NM+E+SSA+ELVDSL NAGDKLV+VDFFSPGCGGCKALHPKI
Sbjct: 85  ---RIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKI 144

Query: 155 CQFAEMNPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKD 214
           CQFAEMNP++QFLQVNYEEHKSMCYSLGVHVLPFFRFYRG+QGRVCSFSCTNATIKKF+D
Sbjct: 145 CQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRD 204

Query: 215 ALAKHNTDRCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVK 274
           ALAKH  DRCSLGPT+GLEEKELVALAAN+EL F YTPK     P+P+            
Sbjct: 205 ALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYTPK-----PVPV-------EKEAA 261

Query: 275 ISESEPS-RLPLPS 282
             +S PS  +PLPS
Sbjct: 265 TPDSNPSLPVPLPS 261

[Close]

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot
Match: Q10M18 (Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0326500 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.0e-73
Identity = 135/208 (64.90%), Postives = 161/208 (77.40%), Query Frame = 0


Query: 43  RLSLKLPSASLSFSSRDSY-GERIQF--REAKVISRNSTSPTRSSTISHSGFRTPKAQKW 102
           R++    +++L    R  + G R+    R ++ + RN  +P + +          KA KW
Sbjct: 34  RMAAAAATSALRIGRRSPFLGRRLAVGPRRSRPVPRNLVAPVQMN------LAFAKATKW 93

Query: 103 WERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQ 162
           WE+GL+ NM+EV SA++LVDSL NAGD LVIVDFFSPGCGGC+ALHPKICQ AE NP++ 
Sbjct: 94  WEKGLQPNMREVESAQDLVDSLTNAGDNLVIVDFFSPGCGGCRALHPKICQIAEQNPDVL 153

Query: 163 FLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTDRCS 222
           FLQVNYEEHKSMCYSL VHVLPFFRFYRGAQGR+CSFSCTNATIKKF+DALAKH  DRCS
Sbjct: 154 FLQVNYEEHKSMCYSLHVHVLPFFRFYRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCS 213

Query: 223 LGPTRGLEEKELVALAANRELCFNYTPK 248
           LGPTRGLEE EL+ALAAN++L FNYT K
Sbjct: 214 LGPTRGLEESELLALAANKDLQFNYTKK 235

[Close]

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot
Match: Q6Z4N3 (Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0684100 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.0e-69
Identity = 131/200 (65.50%), Postives = 151/200 (75.50%), Query Frame = 0


Query: 95  KAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEM 154
           KA +WWE+ L+ NM+E+ SA++L DSLLNAGDKLV+VDFFSPGCGGC+ALHPKI Q AE 
Sbjct: 82  KAMRWWEKCLQPNMREIESAQDLADSLLNAGDKLVVVDFFSPGCGGCRALHPKIAQLAEK 141

Query: 155 NPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHN 214
           NPE+ FLQVNYE+HKSMCYSL VHVLPFFRFYRGAQGRV SFSCTNATIKKFKDALAKH 
Sbjct: 142 NPEVLFLQVNYEKHKSMCYSLHVHVLPFFRFYRGAQGRVSSFSCTNATIKKFKDALAKHG 201

Query: 215 TDRCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVKISESEP 274
            DRC LGP +GLEE EL+ALA NR+L F YTP   + VPI   +   A A          
Sbjct: 202 PDRCGLGPAKGLEESELMALAINRDLNFTYTPN-QDLVPIADALLKEAAAPG-------G 261

Query: 275 SRLPLPSTILKSAAQTSKGN 295
             LPLP+T  +   Q S+ +
Sbjct: 262 PWLPLPATATQLFIQGSENS 273

[Close]

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot
Match: O22779 (Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.4e-65
Identity = 109/156 (69.87%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 97  QKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNP 156
           QKWWE+ L+ NMK V+S ++LV SL NAGDKLV+VDFFSP CGGCKALHPKIC+ AE NP
Sbjct: 84  QKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNP 143

Query: 157 EIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTD 216
           E++FLQVNYEEH+S+C SL +HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL KH  +
Sbjct: 144 EVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGRE 203

Query: 217 RCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEV 253
           +CS+G T+GLEEKELVA+AAN++L F+Y P +   +
Sbjct: 204 QCSIGETKGLEEKELVAMAANKDLSFDYKPTSCGNI 239

[Close]

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot
Match: Q9XFI1 (Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.2e-56
Identity = 111/218 (50.92%), Postives = 144/218 (66.06%), Query Frame = 0


Query: 28  GLKSVISSSNPSTWKRLSLKLPSASLSFSSRDSYGERIQF--REAKVISRNSTSPTRSST 87
           G   V+S  +P + +  S    S  +S   ++       F  +     S +S SP ++ T
Sbjct: 8   GTNCVLSGVSPFSQENQSKSKLSPFMSLDLKEHPMASADFTNQTLTAFSSSSASPFQAKT 67

Query: 88  ISHSGFRTPKAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALH 147
              S     +  +WWE+    NM E+ SA  LVDSLLNAGD+LV++DF+SPGCGGCK+LH
Sbjct: 68  ---SSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLH 127

Query: 148 PKICQFAEMNPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKK 207
           PKICQ AE NP + FL+VN EE ++MC+ L VHVLPFF+FYRGA+G+VCSFSCT ATI K
Sbjct: 128 PKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINK 187

Query: 208 FKDALAKHNTDRCSLGPTRGLEEKELVALAANRELCFN 244
           FK AL KH ++RCSLG  +GL+EKEL ALA+  EL  N
Sbjct: 188 FKKALDKHGSERCSLGDAKGLDEKELAALASVGELKMN 222

[Close]

BLAST of CmaCh06G017380 vs. TAIR 10
Match: AT1G08570.1 (atypical CYS HIS rich thioredoxin 4 )

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-81
Identity = 159/254 (62.60%), Postives = 189/254 (74.41%), Query Frame = 0


Query: 35  SSNPSTWKRLSLKLPSASLSFSSRDS-----YGERIQFREAKVIS-RNSTSPTRSSTISH 94
           S +P ++    LK   + L   S+       YG++I F +++  S R S++ T  +T+  
Sbjct: 25  SFSPVSFGGFGLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSAITAQTTL-- 84

Query: 95  SGFRTPKAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKI 154
              R   AQKWWE+GL+ NM+E+SSA+ELVDSL NAGDKLV+VDFFSPGCGGCKALHPKI
Sbjct: 85  ---RIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKI 144

Query: 155 CQFAEMNPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKD 214
           CQFAEMNP++QFLQVNYEEHKSMCYSLGVHVLPFFRFYRG+QGRVCSFSCTNATIKKF+D
Sbjct: 145 CQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRD 204

Query: 215 ALAKHNTDRCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVK 274
           ALAKH  DRCSLGPT+GLEEKELVALAAN+EL F YTPK     P+P+            
Sbjct: 205 ALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYTPK-----PVPV-------EKEAA 261

Query: 275 ISESEPS-RLPLPS 282
             +S PS  +PLPS
Sbjct: 265 TPDSNPSLPVPLPS 261

[Close]

BLAST of CmaCh06G017380 vs. TAIR 10
Match: AT1G08570.2 (atypical CYS HIS rich thioredoxin 4 )

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-81
Identity = 148/202 (73.27%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 82  RSSTI-SHSGFRTPKAQKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGG 141
           RSS I + +  R   AQKWWE+GL+ NM+E+SSA+ELVDSL NAGDKLV+VDFFSPGCGG
Sbjct: 41  RSSAITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGG 100

Query: 142 CKALHPKICQFAEMNPEIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTN 201
           CKALHPKICQFAEMNP++QFLQVNYEEHKSMCYSLGVHVLPFFRFYRG+QGRVCSFSCTN
Sbjct: 101 CKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTN 160

Query: 202 ATIKKFKDALAKHNTDRCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEVPIPITIHP 261
           ATIKKF+DALAKH  DRCSLGPT+GLEEKELVALAAN+EL F YTPK     P+P+    
Sbjct: 161 ATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYTPK-----PVPV---- 220

Query: 262 RAHAGSVKISESEPS-RLPLPS 282
                     +S PS  +PLPS
Sbjct: 221 ---EKEAATPDSNPSLPVPLPS 230

[Close]

BLAST of CmaCh06G017380 vs. TAIR 10
Match: AT1G08570.3 (atypical CYS HIS rich thioredoxin 4 )

HSP 1 Score: 275.4 bits (703), Expect = 5.4e-74
Identity = 134/175 (76.57%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 108 MKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQFLQVNYEE 167
           M+E+SSA+ELVDSL NAGDKLV+VDFFSPGCGGCKALHPKICQFAEMNP++QFLQVNYEE
Sbjct: 1   MREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEE 60

Query: 168 HKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTDRCSLGPTRGLE 227
           HKSMCYSLGVHVLPFFRFYRG+QGRVCSFSCTNATIKKF+DALAKH  DRCSLGPT+GLE
Sbjct: 61  HKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLE 120

Query: 228 EKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVKISESEPS-RLPLPS 282
           EKELVALAAN+EL F YTPK     P+P+              +S PS  +PLPS
Sbjct: 121 EKELVALAANKELNFTYTPK-----PVPV-------EKEAATPDSNPSLPVPLPS 163

[Close]

BLAST of CmaCh06G017380 vs. TAIR 10
Match: AT1G08570.4 (atypical CYS HIS rich thioredoxin 4 )

HSP 1 Score: 275.4 bits (703), Expect = 5.4e-74
Identity = 134/175 (76.57%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 108 MKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQFLQVNYEE 167
           M+E+SSA+ELVDSL NAGDKLV+VDFFSPGCGGCKALHPKICQFAEMNP++QFLQVNYEE
Sbjct: 1   MREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEE 60

Query: 168 HKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTDRCSLGPTRGLE 227
           HKSMCYSLGVHVLPFFRFYRG+QGRVCSFSCTNATIKKF+DALAKH  DRCSLGPT+GLE
Sbjct: 61  HKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLE 120

Query: 228 EKELVALAANRELCFNYTPKAAEEVPIPITIHPRAHAGSVKISESEPS-RLPLPS 282
           EKELVALAAN+EL F YTPK     P+P+              +S PS  +PLPS
Sbjct: 121 EKELVALAANKELNFTYTPK-----PVPV-------EKEAATPDSNPSLPVPLPS 163

[Close]

BLAST of CmaCh06G017380 vs. TAIR 10
Match: AT2G33270.1 (atypical CYS HIS rich thioredoxin 3 )

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-66
Identity = 109/156 (69.87%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 97  QKWWERGLEANMKEVSSAEELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNP 156
           QKWWE+ L+ NMK V+S ++LV SL NAGDKLV+VDFFSP CGGCKALHPKIC+ AE NP
Sbjct: 84  QKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNP 143

Query: 157 EIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTD 216
           E++FLQVNYEEH+S+C SL +HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL KH  +
Sbjct: 144 EVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGRE 203

Query: 217 RCSLGPTRGLEEKELVALAANRELCFNYTPKAAEEV 253
           +CS+G T+GLEEKELVA+AAN++L F+Y P +   +
Sbjct: 204 QCSIGETKGLEEKELVAMAANKDLSFDYKPTSCGNI 239

The following BLAST results are available for this feature:

BLAST of CmaCh06G017380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64654	1.7e-80	62.60	Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g08570...	[more]
Q10M18	2.0e-73	64.90	Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q6Z4N3	3.0e-69	65.50	Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
O22779	4.4e-65	69.87	Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33270...	[more]
Q9XFI1	2.2e-56	50.92	Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440...	[more]

BLAST of CmaCh06G017380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08570.1	1.2e-81	62.60	atypical CYS HIS rich thioredoxin 4	[more]
AT1G08570.2	4.5e-81	73.27	atypical CYS HIS rich thioredoxin 4	[more]
AT1G08570.3	5.4e-74	76.57	atypical CYS HIS rich thioredoxin 4	[more]
AT1G08570.4	5.4e-74	76.57	atypical CYS HIS rich thioredoxin 4	[more]
AT2G33270.1	3.2e-66	69.87	atypical CYS HIS rich thioredoxin 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 119..195 e-value: 1.5E-13 score: 50.6
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 87..215 score: 9.92061
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 99..220 e-value: 1.3E-18 score: 68.9
None	No IPR available	PANTHER	PTHR43601	THIOREDOXIN, MITOCHONDRIAL	coord: 47..289
None	No IPR available	PANTHER	PTHR43601:SF9	THIOREDOXIN-LIKE 1-3, CHLOROPLASTIC	coord: 47..289
None	No IPR available	CDD	cd02947	TRX_family	coord: 115..211 e-value: 2.84878E-18 score: 76.0576
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 97..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017380.1	CmaCh06G017380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0009507	chloroplast