CmaCh06G017330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GATA transcription factor 12-like
Location	Cma_Chr06: 10595890 .. 10597540 (+)
RNA-Seq Expression	CmaCh06G017330
Synteny	CmaCh06G017330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGAGGGAGAAGGGAGATGGGGACGTTGATTTGAATAATTCTGTTAGTTGCTAAAAGCAAGCCATCGTAATCTGCCGACACAAAAATTAAAGAGAGTCCAAAACCAACTCATAAGCATCACAGCCATACAATATTACTGCTTCACTCATTCATACCTCATACAGTTCTCCAACTATTATTCAATTTCCCTTCTCTCTCGCTCTCTCTCTCGCTCTCTCTCTCTCCCCCCTTTGCTGTTGCTACCATGGATTACCAGCCGAAAATGGTGTCGGTCAACAGCGAATACGAGCAAGACGACTGTTCTAAACTCAAGTCCGAGCTTTCTTCCACTCTCGACGACGACCTCTGTTCACTCCAGATGACGACAATGGTATGTCATTTTAAACTCCATTGCTTTGTTTTTGTGCCTTTTTGTTCTCATCACACCAATGTTGAGCTTCATTGAATTCAGGAAGTTGATGGGAACTTGGAGTGGCTGTCAGCATTTGTGGAAGAATGCTTATCAGCCAAAGGAAGCAGCCTCCCCCTCCCACCCCCACAGCTATCCACACACCTCAACAATCCTCCACCACCACCAAATTCACTCTCTCACCCCATACCATCTTCTTCCGACTCGCCGTTCTCTCACTTTTCTGCAGTCCCCAGCAAGGCAAGAAGCAAGAGAAGACAGGCGCCTGCCAACACGAGCATTTGCCCTCTCATTGGTCAACACCACCTCGATCAACTGAACCTGCTGCCGAACAAACAGTCCTTACAGTTGACCTCTTCCTCTGCAGACATTCTTTTGCTGCAACAGACATATTGGTTGGCTGACAGTGAGCTCCTATTGCCGCATAAGGCTCGAGGAGGAGGAGAAGAAAGGGAGAAGAAGGTGGAAATGGATCAGAGAGATACAACAGTGAAGAAGAGTTTGGGGCTGCAGCAGAAACAGGGTGCAGGGAGTGGGAGGAGATGCAGCCATTGTCAGGCACAGAGGACTCCACAGTGGAGGGGTGGACCATTGGGACCCAAGACATTATGTAATGCATGTGGAGTTAGATACAAGAAGTCAGGAAGGTTGGTGCCAGAGTATAGACCAGCCAACAGCCCTACTTTTGTGAGTTTCTTGCATTCCAATTCACACAAAAGGGTTATGGAGATGAGAATGATCAATGCCTCTTCTTCTACTTCTACTGCCTTTTCCTCTTCTTAAAACCTACACTACTGGCCAACCATGCTGGAAGCTGCAACTGTTTGGTTCTTCAATGTAAACCTTCCCCTTTCCTTTCTACGTTAGAGTAATGAACTCTCGAGTACAAAAAGACAAGCATCTTTCTATTTCTTAGAGGTTTTACCAGAGATGAATTTAATTTTTAAGACCACCCGTGTATCAATTACTACTTGGACTACGTTAGTTACTGTAACAACCTAAGCCTACTGCTAGCAGATCTTATTCTCTTCGAGCTTTCCTCTCTAGGTTTCCCTTCAAAGTTTTAAAACGCATTTGTTAGGGAGAGATTACCACACTCTTGTAAAAGATGCTTCGTTCGTTCCTCTCTCCAACCAATGTGGGATCTCATAGTTACATTTCTTTATGGTATTCAATCAAGATGGATTCATTTCGTTGGTAGAAAATGGTTACATCCATTACTACCTCTTTTCATATGCTC

mRNA sequence

GGGAGAGGGAGAAGGGAGATGGGGACGTTGATTTGAATAATTCTGTTAGTTGCTAAAAGCAAGCCATCGTAATCTGCCGACACAAAAATTAAAGAGAGTCCAAAACCAACTCATAAGCATCACAGCCATACAATATTACTGCTTCACTCATTCATACCTCATACAGTTCTCCAACTATTATTCAATTTCCCTTCTCTCTCGCTCTCTCTCTCGCTCTCTCTCTCTCCCCCCTTTGCTGTTGCTACCATGGATTACCAGCCGAAAATGGTGTCGGTCAACAGCGAATACGAGCAAGACGACTGTTCTAAACTCAAGTCCGAGCTTTCTTCCACTCTCGACGACGACCTCTGTTCACTCCAGATGACGACAATGGAAGTTGATGGGAACTTGGAGTGGCTGTCAGCATTTGTGGAAGAATGCTTATCAGCCAAAGGAAGCAGCCTCCCCCTCCCACCCCCACAGCTATCCACACACCTCAACAATCCTCCACCACCACCAAATTCACTCTCTCACCCCATACCATCTTCTTCCGACTCGCCGTTCTCTCACTTTTCTGCAGTCCCCAGCAAGGCAAGAAGCAAGAGAAGACAGGCGCCTGCCAACACGAGCATTTGCCCTCTCATTGGTCAACACCACCTCGATCAACTGAACCTGCTGCCGAACAAACAGTCCTTACAGTTGACCTCTTCCTCTGCAGACATTCTTTTGCTGCAACAGACATATTGGTTGGCTGACAGTGAGCTCCTATTGCCGCATAAGGCTCGAGGAGGAGGAGAAGAAAGGGAGAAGAAGGTGGAAATGGATCAGAGAGATACAACAGTGAAGAAGAGTTTGGGGCTGCAGCAGAAACAGGGTGCAGGGAGTGGGAGGAGATGCAGCCATTGTCAGGCACAGAGGACTCCACAGTGGAGGGGTGGACCATTGGGACCCAAGACATTATGTAATGCATGTGGAGTTAGATACAAGAAGTCAGGAAGGTTGGTGCCAGAGTATAGACCAGCCAACAGCCCTACTTTTGTGAGTTTCTTGCATTCCAATTCACACAAAAGGGTTATGGAGATGAGAATGATCAATGCCTCTTCTTCTACTTCTACTGCCTTTTCCTCTTCTTAAAACCTACACTACTGGCCAACCATGCTGGAAGCTGCAACTGTTTGGTTCTTCAATGTAAACCTTCCCCTTTCCTTTCTACGTTAGAGTAATGAACTCTCGAGTACAAAAAGACAAGCATCTTTCTATTTCTTAGAGGTTTTACCAGAGATGAATTTAATTTTTAAGACCACCCGTGTATCAATTACTACTTGGACTACGTTAGTTACTGTAACAACCTAAGCCTACTGCTAGCAGATCTTATTCTCTTCGAGCTTTCCTCTCTAGGTTTCCCTTCAAAGTTTTAAAACGCATTTGTTAGGGAGAGATTACCACACTCTTGTAAAAGATGCTTCGTTCGTTCCTCTCTCCAACCAATGTGGGATCTCATAGTTACATTTCTTTATGGTATTCAATCAAGATGGATTCATTTCGTTGGTAGAAAATGGTTACATCCATTACTACCTCTTTTCATATGCTC

Coding sequence (CDS)

ATGGATTACCAGCCGAAAATGGTGTCGGTCAACAGCGAATACGAGCAAGACGACTGTTCTAAACTCAAGTCCGAGCTTTCTTCCACTCTCGACGACGACCTCTGTTCACTCCAGATGACGACAATGGAAGTTGATGGGAACTTGGAGTGGCTGTCAGCATTTGTGGAAGAATGCTTATCAGCCAAAGGAAGCAGCCTCCCCCTCCCACCCCCACAGCTATCCACACACCTCAACAATCCTCCACCACCACCAAATTCACTCTCTCACCCCATACCATCTTCTTCCGACTCGCCGTTCTCTCACTTTTCTGCAGTCCCCAGCAAGGCAAGAAGCAAGAGAAGACAGGCGCCTGCCAACACGAGCATTTGCCCTCTCATTGGTCAACACCACCTCGATCAACTGAACCTGCTGCCGAACAAACAGTCCTTACAGTTGACCTCTTCCTCTGCAGACATTCTTTTGCTGCAACAGACATATTGGTTGGCTGACAGTGAGCTCCTATTGCCGCATAAGGCTCGAGGAGGAGGAGAAGAAAGGGAGAAGAAGGTGGAAATGGATCAGAGAGATACAACAGTGAAGAAGAGTTTGGGGCTGCAGCAGAAACAGGGTGCAGGGAGTGGGAGGAGATGCAGCCATTGTCAGGCACAGAGGACTCCACAGTGGAGGGGTGGACCATTGGGACCCAAGACATTATGTAATGCATGTGGAGTTAGATACAAGAAGTCAGGAAGGTTGGTGCCAGAGTATAGACCAGCCAACAGCCCTACTTTTGTGAGTTTCTTGCATTCCAATTCACACAAAAGGGTTATGGAGATGAGAATGATCAATGCCTCTTCTTCTACTTCTACTGCCTTTTCCTCTTCTTAA

Protein sequence

MDYQPKMVSVNSEYEQDDCSKLKSELSSTLDDDLCSLQMTTMEVDGNLEWLSAFVEECLSAKGSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSPFSHFSAVPSKARSKRRQAPANTSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQTYWLADSELLLPHKARGGGEEREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMRMINASSSTSTAFSSS

Homology

[Close]

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot
Match: O82632 (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-28
Identity = 93/235 (39.57%), Postives = 115/235 (48.94%), Query Frame = 0


Query: 48  LEWLSAFVEECLSAK---------GSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSP 107
           LEWLS FVEE  + +         G   P       THL  P P    L H      +S 
Sbjct: 80  LEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEP---ELDHQFIDIDESN 139

Query: 108 FSHFSAVPSKARSKRRQAPANTSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQT 167
                AVP+KARSKR ++ A+T    L+                                
Sbjct: 140 V----AVPAKARSKRSRSAASTWASRLLS------------------------------- 199

Query: 168 YWLADSELLLPHKARGGGEEREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRT 227
             LADS+   P K +   +E++   +MD                 +G GRRC HC  ++T
Sbjct: 200 --LADSDETNPKKKQRRVKEQDFAGDMD------------VDCGESGGGRRCLHCATEKT 259

Query: 228 PQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMR 274
           PQWR GP+GPKTLCNACGVRY KSGRLVPEYRPA+SPTFV   HSNSH++VME+R
Sbjct: 260 PQWRTGPMGPKTLCNACGVRY-KSGRLVPEYRPASSPTFVMARHSNSHRKVMELR 261

[Close]

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot
Match: P69781 (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 100/252 (39.68%), Postives = 132/252 (52.38%), Query Frame = 0


Query: 28  STLDDDLCSLQMTTMEVDGNLEWLSAFVEECLSAKG-SSLPLPPPQLSTHLNNPPPPPNS 87
           ++   DLC   + + ++   LEWLS  V+E LS +    L L    +S   + P P  ++
Sbjct: 65  TSFSGDLC---IPSDDLADELEWLSNIVDESLSPEDVHKLEL----ISGFKSRPDPKSDT 124

Query: 88  LSHPIPSSSDSPFSHFSAVPSKARSKR-RQAPANTSICPLIGQHHLDQ----LNLLPNKQ 147
            S   P+SS   F+   +VP+KARSKR R A  N +   L+ +   D       +L ++Q
Sbjct: 125 GSPENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQ 184

Query: 148 SLQLTSSSADILLLQQTYWLADSELLLPHKARGGGEEREKKVEMDQRDTTVKKSLGLQQK 207
            L   +S    LL+           L   +A  GG  R+K V                 +
Sbjct: 185 HLSPPTSPP--LLMAP---------LGKKQAVDGGHRRKKDVS--------------SPE 244

Query: 208 QGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFL 267
            G    RRC HC   +TPQWR GP+GPKTLCNACGVRY KSGRLVPEYRPA SPTFV   
Sbjct: 245 SGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRY-KSGRLVPEYRPAASPTFVLAK 283

Query: 268 HSNSHKRVMEMR 274
           HSNSH++VME+R
Sbjct: 305 HSNSHRKVMELR 283

[Close]

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot
Match: Q9FH57 (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-27
Identity = 106/276 (38.41%), Postives = 136/276 (49.28%), Query Frame = 0


Query: 4   QPKMVSVNSEYEQDDCSKLKSELSSTLDDDLCSLQMTTMEVD----GNLEWLSAFVEECL 63
           Q +MV V+SE   DD   L+     +  DD  SL  + + +      NLEWLS FVE+  
Sbjct: 65  QHEMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSHFVEDSF 124

Query: 64  SAKGSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSPFSHFSAVPSKARSKRRQAPAN 123
           +         P    T    P        HP+ + ++      S VP+KARSKR +   N
Sbjct: 125 TEYSG-----PNLTGTPTEKPAWLTGDRKHPVTAVTEET-CFKSPVPAKARSKRNR---N 184

Query: 124 TSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQTYWLADSELLLP--HKARGGGE 183
                 +G          P+      +SSS        + W + +ELL P     R    
Sbjct: 185 GLKVWSLGSSSSSG----PSSSGSTSSSSSG-----PSSPWFSGAELLEPVVTSERPPFP 244

Query: 184 EREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGV 243
           ++ KK     R      S  LQQ Q     R+CSHC  Q+TPQWR GP+G KTLCNACGV
Sbjct: 245 KKHKK-----RSAESVFSGELQQLQ---PQRKCSHCGVQKTPQWRAGPMGAKTLCNACGV 304

Query: 244 RYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMR 274
           RY KSGRL+PEYRPA SPTF S LHSN H++V+EMR
Sbjct: 305 RY-KSGRLLPEYRPACSPTFSSELHSNHHRKVIEMR 313

[Close]

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot
Match: Q8LAU9 (GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 207 GRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHSNSH 266
           GR+C HC A++TPQWR GP GPKTLCNACGVRY KSGRLVPEYRPANSPTF + LHSNSH
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRY-KSGRLVPEYRPANSPTFTAELHSNSH 252

Query: 267 KRVMEMR 274
           ++++EMR
Sbjct: 253 RKIVEMR 258

[Close]

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot
Match: O49743 (GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-25
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 204 AGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHS 263
           A   RRC+HC +++TPQWR GPLGPKTLCNACGVRY KSGRLVPEYRPA+SPTFV   HS
Sbjct: 154 ADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRY-KSGRLVPEYRPASSPTFVLTQHS 213

Query: 264 NSHKRVMEMR 274
           NSH++VME+R
Sbjct: 214 NSHRKVMELR 222

[Close]

BLAST of CmaCh06G017330 vs. TAIR 10
Match: AT4G32890.1 (GATA transcription factor 9 )

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-29
Identity = 93/235 (39.57%), Postives = 115/235 (48.94%), Query Frame = 0


Query: 48  LEWLSAFVEECLSAK---------GSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSP 107
           LEWLS FVEE  + +         G   P       THL  P P    L H      +S 
Sbjct: 80  LEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEP---ELDHQFIDIDESN 139

Query: 108 FSHFSAVPSKARSKRRQAPANTSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQT 167
                AVP+KARSKR ++ A+T    L+                                
Sbjct: 140 V----AVPAKARSKRSRSAASTWASRLLS------------------------------- 199

Query: 168 YWLADSELLLPHKARGGGEEREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRT 227
             LADS+   P K +   +E++   +MD                 +G GRRC HC  ++T
Sbjct: 200 --LADSDETNPKKKQRRVKEQDFAGDMD------------VDCGESGGGRRCLHCATEKT 259

Query: 228 PQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMR 274
           PQWR GP+GPKTLCNACGVRY KSGRLVPEYRPA+SPTFV   HSNSH++VME+R
Sbjct: 260 PQWRTGPMGPKTLCNACGVRY-KSGRLVPEYRPASSPTFVMARHSNSHRKVMELR 261

[Close]

BLAST of CmaCh06G017330 vs. TAIR 10
Match: AT5G25830.1 (GATA transcription factor 12 )

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-28
Identity = 100/252 (39.68%), Postives = 132/252 (52.38%), Query Frame = 0


Query: 28  STLDDDLCSLQMTTMEVDGNLEWLSAFVEECLSAKG-SSLPLPPPQLSTHLNNPPPPPNS 87
           ++   DLC   + + ++   LEWLS  V+E LS +    L L    +S   + P P  ++
Sbjct: 65  TSFSGDLC---IPSDDLADELEWLSNIVDESLSPEDVHKLEL----ISGFKSRPDPKSDT 124

Query: 88  LSHPIPSSSDSPFSHFSAVPSKARSKR-RQAPANTSICPLIGQHHLDQ----LNLLPNKQ 147
            S   P+SS   F+   +VP+KARSKR R A  N +   L+ +   D       +L ++Q
Sbjct: 125 GSPENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQ 184

Query: 148 SLQLTSSSADILLLQQTYWLADSELLLPHKARGGGEEREKKVEMDQRDTTVKKSLGLQQK 207
            L   +S    LL+           L   +A  GG  R+K V                 +
Sbjct: 185 HLSPPTSPP--LLMAP---------LGKKQAVDGGHRRKKDVS--------------SPE 244

Query: 208 QGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFL 267
            G    RRC HC   +TPQWR GP+GPKTLCNACGVRY KSGRLVPEYRPA SPTFV   
Sbjct: 245 SGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRY-KSGRLVPEYRPAASPTFVLAK 283

Query: 268 HSNSHKRVMEMR 274
           HSNSH++VME+R
Sbjct: 305 HSNSHRKVMELR 283

[Close]

BLAST of CmaCh06G017330 vs. TAIR 10
Match: AT5G66320.1 (GATA transcription factor 5 )

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-28
Identity = 106/276 (38.41%), Postives = 136/276 (49.28%), Query Frame = 0


Query: 4   QPKMVSVNSEYEQDDCSKLKSELSSTLDDDLCSLQMTTMEVD----GNLEWLSAFVEECL 63
           Q +MV V+SE   DD   L+     +  DD  SL  + + +      NLEWLS FVE+  
Sbjct: 65  QHEMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSHFVEDSF 124

Query: 64  SAKGSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSPFSHFSAVPSKARSKRRQAPAN 123
           +         P    T    P        HP+ + ++      S VP+KARSKR +   N
Sbjct: 125 TEYSG-----PNLTGTPTEKPAWLTGDRKHPVTAVTEET-CFKSPVPAKARSKRNR---N 184

Query: 124 TSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQTYWLADSELLLP--HKARGGGE 183
                 +G          P+      +SSS        + W + +ELL P     R    
Sbjct: 185 GLKVWSLGSSSSSG----PSSSGSTSSSSSG-----PSSPWFSGAELLEPVVTSERPPFP 244

Query: 184 EREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGV 243
           ++ KK     R      S  LQQ Q     R+CSHC  Q+TPQWR GP+G KTLCNACGV
Sbjct: 245 KKHKK-----RSAESVFSGELQQLQ---PQRKCSHCGVQKTPQWRAGPMGAKTLCNACGV 304

Query: 244 RYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMR 274
           RY KSGRL+PEYRPA SPTF S LHSN H++V+EMR
Sbjct: 305 RY-KSGRLLPEYRPACSPTFSSELHSNHHRKVIEMR 313

[Close]

BLAST of CmaCh06G017330 vs. TAIR 10
Match: AT5G66320.2 (GATA transcription factor 5 )

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-28
Identity = 106/276 (38.41%), Postives = 136/276 (49.28%), Query Frame = 0


Query: 4   QPKMVSVNSEYEQDDCSKLKSELSSTLDDDLCSLQMTTMEVD----GNLEWLSAFVEECL 63
           Q +MV V+SE   DD   L+     +  DD  SL  + + +      NLEWLS FVE+  
Sbjct: 65  QHEMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSHFVEDSF 124

Query: 64  SAKGSSLPLPPPQLSTHLNNPPPPPNSLSHPIPSSSDSPFSHFSAVPSKARSKRRQAPAN 123
           +         P    T    P        HP+ + ++      S VP+KARSKR +   N
Sbjct: 125 TEYSG-----PNLTGTPTEKPAWLTGDRKHPVTAVTEET-CFKSPVPAKARSKRNR---N 184

Query: 124 TSICPLIGQHHLDQLNLLPNKQSLQLTSSSADILLLQQTYWLADSELLLP--HKARGGGE 183
                 +G          P+      +SSS        + W + +ELL P     R    
Sbjct: 185 GLKVWSLGSSSSSG----PSSSGSTSSSSSG-----PSSPWFSGAELLEPVVTSERPPFP 244

Query: 184 EREKKVEMDQRDTTVKKSLGLQQKQGAGSGRRCSHCQAQRTPQWRGGPLGPKTLCNACGV 243
           ++ KK     R      S  LQQ Q     R+CSHC  Q+TPQWR GP+G KTLCNACGV
Sbjct: 245 KKHKK-----RSAESVFSGELQQLQ---PQRKCSHCGVQKTPQWRAGPMGAKTLCNACGV 304

Query: 244 RYKKSGRLVPEYRPANSPTFVSFLHSNSHKRVMEMR 274
           RY KSGRL+PEYRPA SPTF S LHSN H++V+EMR
Sbjct: 305 RY-KSGRLLPEYRPACSPTFSSELHSNHHRKVIEMR 313

[Close]

BLAST of CmaCh06G017330 vs. TAIR 10
Match: AT3G24050.1 (GATA transcription factor 1 )

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-27
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 207 GRRCSHCQAQRTPQWRGGPLGPKTLCNACGVRYKKSGRLVPEYRPANSPTFVSFLHSNSH 266
           GR+C HC A++TPQWR GP GPKTLCNACGVRY KSGRLVPEYRPANSPTF + LHSNSH
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRY-KSGRLVPEYRPANSPTFTAELHSNSH 252

Query: 267 KRVMEMR 274
           ++++EMR
Sbjct: 253 RKIVEMR 258

The following BLAST results are available for this feature:

BLAST of CmaCh06G017330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82632	3.2e-28	39.57	GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1	[more]
P69781	1.6e-27	39.68	GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1	[more]
Q9FH57	4.6e-27	38.41	GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1	[more]
Q8LAU9	3.9e-26	77.61	GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2	[more]
O49743	1.5e-25	75.71	GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1	[more]

BLAST of CmaCh06G017330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32890.1	2.3e-29	39.57	GATA transcription factor 9	[more]
AT5G25830.1	1.1e-28	39.68	GATA transcription factor 12	[more]
AT5G66320.1	3.3e-28	38.41	GATA transcription factor 5	[more]
AT5G66320.2	3.3e-28	38.41	GATA transcription factor 5	[more]
AT3G24050.1	2.8e-27	77.61	GATA transcription factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 204..255 e-value: 1.2E-17 score: 74.6
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 210..244 e-value: 1.4E-15 score: 56.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 210..235
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 204..247 score: 12.927383
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 209..257 e-value: 1.64486E-13 score: 62.005
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 205..273 e-value: 1.8E-16 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	PANTHER	PTHR45658:SF85	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 7..280
None	No IPR available	PANTHER	PTHR45658	GATA TRANSCRIPTION FACTOR	coord: 7..280
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 206..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017330.1	CmaCh06G017330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding