CmaCh06G017310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	photosynthetic NDH subunit of subcomplex B 2, chloroplastic
Location	Cma_Chr06: 10591299 .. 10594143 (+)
RNA-Seq Expression	CmaCh06G017310
Synteny	CmaCh06G017310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGACCAAAATAGAACTCCAAAGGAAGACATTGGTGGGAGAGTAAGGTAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTCTCTCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCACTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCTAATGGCGGAAAAGGAGGAATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAATCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTATATCTAGCATATATCTAATATATCTTTGACGAAATTTTGCCTGGTTCTCTTTGGGCTTTGCTTCTTCATTTATTTATGATCTTTGCTGCTCAAGCGTTGAGTGAATTCATTTGTCTTGTTTTTCTCCTAATTATGCTGTGGGACTGCAGGAGCAGAAGCTACATTAATGATTTAAGTTAGTGTACCCCGTTGTCTACCTGGAATCTGAACTCTATTTTGTATTTGAATGGGTTGCACACTTTTGTTATATTATTGATATGATATTATTCACTTTGGACATAAACTCTCATGGTTTTGTTTTAGTTTCTCCAAAAGGCCTCGTACCAAATGAAGATAATGCTCTTTACTTATAAACTCATGATACTCCTCCTAATTAGCTGAGTGGGACTACTCCTTTCAATAATTTTCAACAATCCTCCCCTCGAACAAATTACACCATAGAGCCTCCCTTGAGGCCTTTGAAGCTCTCAAACAGCTTTTCCTTAATCGAGGCTCAACTCTTTTCTCTGGAGCCCTCAAATAAAGTACACCATTTATTCGACACTTCGAGGCTCACAATTTCTTTGTTTGACATTCGAGGATTCTATGGACATGACTAAATTATGGGCATGGCTCTGATACTATGTTAGGAATCACAAATCTCCACAATGTTTACTTTGAGCCTAAACTCTCATGACTTTACTTTTAGTTTTCCTAAAATGCCTCATACCAATGGAGATAGTGTTCCTTACTTTGTAAACCCATGATCTTCGTCTTAATTTCTTAATTAGCTAATGTGAGATACTTCTTTTAATAATCCTCAACAGATCTAACAAATCCTCCTTTGAAACGAGTATTCATTTGTCCACTCTCTATCATGATTCTACTATTTTCGTGATCCCTGGTTAAACGATTAGATGTGTGAGAGGTTTAAGAACTGTATTTCATGAATTTTAGGAGGTAGCAAGATTTGAATTGCATTGGAGTGTTATTGGGAAGCAGCTACGTTGTGGCGATCATATTAAATAATTTCTCCCTTCTGTCATATTATGTTTGGAACGTGATTTTGAGCTTGCGTAGTTATTGTTTTCATCTCTATATTGGTAATGATATCATCATTATACTAATTAAGATTTTGTTCTTCCTTCTCAACTCATAGTTTTCCTCACTCTAGTGCTAAGTAATGAAGGGTTGAATACATCTCATCTTTTGTTAAGACAGTGTACCAAGTTGTGCAAGTTGAATGCCTTTGTATGTGGAGGTTTCATTTTGTTTTCCCTGGCATGGTTTTGTTGCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCAAAGCTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCCCCATTATCTTCCCCTTTTGAAATACTGTCTCCGACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGCTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTTACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGTAAAGAAATAGCTACTGTATTGCATCACACATCTTTGAACATGTTTTTGGCATCGCTAAGTACTTTCTATTCAAGAACTTTACTTCTTACTTATCTTAAGAACTTTTTACTTCTTAATCTCTTTTGGCGAAGTACTTATAAGGGAAATATTTTGACGAAAAGCACTTATGTATTTCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAAGACATATACTTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAATGTATTATTTCCTCTTTAATCTTCATATTTTTACCCAAATTCATTATCAAATGAACACCTGATCAAGTACAAGTAGCAGCTAAAATATTTACATATGCTCCTCTATTTTCGAGAACTTGGTGTACGAGCTTCTTTGTTTATACAATAAATCCACCGACTTCCCAATATGATATTACTAATCAGGA

mRNA sequence

GGGACCAAAATAGAACTCCAAAGGAAGACATTGGTGGGAGAGTAAGGTAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTCTCTCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCACTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCTAATGGCGGAAAAGGAGGAATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAATCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCAAAGCTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCCCCATTATCTTCCCCTTTTGAAATACTGTCTCCGACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGCTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTTACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAAGACATATACTTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAATGTATTATTTCCTCTTTAATCTTCATATTTTTACCCAAATTCATTATCAAATGAACACCTGATCAAGTACAAGTAGCAGCTAAAATATTTACATATGCTCCTCTATTTTCGAGAACTTGGTGTACGAGCTTCTTTGTTTATACAATAAATCCACCGACTTCCCAATATGATATTACTAATCAGGA

Coding sequence (CDS)

ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTCTCTCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCACTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCTAATGGCGGAAAAGGAGGAATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAATCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCAAAGCTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCCCCATTATCTTCCCCTTTTGAAATACTGTCTCCGACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGCTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTTACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAAGACATATACTTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA

Protein sequence

MASLVCLPLPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVIRMGFEDIYLQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL

Homology

[Close]

BLAST of CmaCh06G017310 vs. ExPASy Swiss-Prot
Match: Q94AQ8 (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB2 PE=2 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-115
Identity = 213/360 (59.17%), Postives = 266/360 (73.89%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIP 60
           MASL+    LPK   VR         SS+S   T  +  + L DKFGRKGI F +SN IP
Sbjct: 1   MASLISFSLLPKPKAVR---------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIP 60

Query: 61  TVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDAS 120
            V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +  
Sbjct: 61  MVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVIVNGE 120

Query: 121 NSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNT 180
                SS++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN 
Sbjct: 121 EPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNN 180

Query: 181 GPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWF 240
           G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W 
Sbjct: 181 GRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW- 240

Query: 241 SFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELF 300
            FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQGR LF
Sbjct: 241 -FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQGRGLF 300

Query: 301 FRVIRMGFEDIYLQSPGSLSDKFGKD-YFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL 359
           FR+IR+GFE++Y+ SPGS+ DK+GK  YF+CTGP SMLVPV V  GE WRGA VIEHDNL
Sbjct: 301 FRMIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHDNL 348

[Close]

BLAST of CmaCh06G017310 vs. ExPASy Swiss-Prot
Match: Q9C503 (Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 OS=Arabidopsis thaliana OX=3702 GN=NDF5 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-24
Identity = 91/370 (24.59%), Postives = 160/370 (43.24%), Query Frame = 0


Query: 2   ASLVCLPLPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTV 61
           +S   LPL     ++   SS   S+S S S   P+  + L  +F   G  F         
Sbjct: 26  SSFASLPLQFHKNIKRLESSVPPSASASASPAFPIDVEYLRREFSGHGATFEDIGETCIA 85

Query: 62  DLTVRNGSSLRLHISDAHITSYKPKVY----------WKDDGFEEVLFTTPAANGGKGGI 121
            L + NGSS  + ++   ITSYK +V+          W +   EEV+         +GG+
Sbjct: 86  RLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEEEEVVI--------RGGV 145

Query: 122 GLVINDASNSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSS---KQMEITYIVTLYSE 181
                  S++   S     SDW ++ +  D+ D +Q+EL  S    K++E+  I++L   
Sbjct: 146 -------SSAFRSSDSDEISDWRLQGISGDSKDCVQMELRRSDKKIKEIELKQIISLREN 205

Query: 182 SMATAVIVKNTGPKLLSLNS-AILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSP 241
           +++  + + N G   + L   +++S+      +     GLEG  +    P    F ++  
Sbjct: 206 TLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEGSDFVETTPFLPRFGVVQ- 265

Query: 242 TEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPS 301
                         G + +EK G    ++  +  L  + SR+Y               P 
Sbjct: 266 --------------GEKEEEKPGFGGEEESNYKQLNREMSRIYTC------------APK 325

Query: 302 KYETLDQGRELFFRVIRMGFEDIYLQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQW 358
            +  +D+GR     V R GFE++Y+ SPGS  + + K  ++C GP+S+L P++++ G  W
Sbjct: 326 SFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLLSPISLESGCVW 353

[Close]

BLAST of CmaCh06G017310 vs. ExPASy Swiss-Prot
Match: Q40784 (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.6e-05
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 281 VYHTTPSKYETLDQGRELFFRVIRMGFEDIYLQSPGSLSDKFGKDY-------FICTGPA 340
           VY   PSK   +D  ++  F V + G  D  + +P     K  +D+        +C  PA
Sbjct: 230 VYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPA 289

Query: 341 SMLVPVTVKPGEQWRG 350
           ++  P+T+KPGE+WRG
Sbjct: 290 AVEKPITLKPGEEWRG 305

[Close]

BLAST of CmaCh06G017310 vs. TAIR 10
Match: AT1G64770.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 417.9 bits (1073), Expect = 8.1e-117
Identity = 213/360 (59.17%), Postives = 266/360 (73.89%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIP 60
           MASL+    LPK   VR         SS+S   T  +  + L DKFGRKGI F +SN IP
Sbjct: 1   MASLISFSLLPKPKAVR---------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIP 60

Query: 61  TVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDAS 120
            V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +  
Sbjct: 61  MVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVIVNGE 120

Query: 121 NSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNT 180
                SS++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN 
Sbjct: 121 EPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNN 180

Query: 181 GPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWF 240
           G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W 
Sbjct: 181 GRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW- 240

Query: 241 SFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELF 300
            FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQGR LF
Sbjct: 241 -FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQGRGLF 300

Query: 301 FRVIRMGFEDIYLQSPGSLSDKFGKD-YFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL 359
           FR+IR+GFE++Y+ SPGS+ DK+GK  YF+CTGP SMLVPV V  GE WRGA VIEHDNL
Sbjct: 301 FRMIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHDNL 348

[Close]

BLAST of CmaCh06G017310 vs. TAIR 10
Match: AT1G64770.3 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 320.1 bits (819), Expect = 2.3e-87
Identity = 167/298 (56.04%), Postives = 214/298 (71.81%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIP 60
           MASL+    LPK   VR         SS+S   T  +  + L DKFGRKGI F +SN IP
Sbjct: 1   MASLISFSLLPKPKAVR---------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIP 60

Query: 61  TVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDAS 120
            V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +  
Sbjct: 61  MVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVIVNGE 120

Query: 121 NSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNT 180
                SS++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN 
Sbjct: 121 EPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNN 180

Query: 181 GPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWF 240
           G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W 
Sbjct: 181 GRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW- 240

Query: 241 SFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRE 298
            FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQ ++
Sbjct: 241 -FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQKKK 286

[Close]

BLAST of CmaCh06G017310 vs. TAIR 10
Match: AT1G64770.2 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 319.3 bits (817), Expect = 3.9e-87
Identity = 167/295 (56.61%), Postives = 212/295 (71.86%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIP 60
           MASL+    LPK   VR         SS+S   T  +  + L DKFGRKGI F +SN IP
Sbjct: 1   MASLISFSLLPKPKAVR---------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIP 60

Query: 61  TVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDAS 120
            V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +  
Sbjct: 61  MVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVIVNGE 120

Query: 121 NSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNT 180
                SS++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN 
Sbjct: 121 EPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNN 180

Query: 181 GPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWF 240
           G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W 
Sbjct: 181 GRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW- 240

Query: 241 SFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQ 295
            FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQ
Sbjct: 241 -FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQ 283

[Close]

BLAST of CmaCh06G017310 vs. TAIR 10
Match: AT1G55370.2 (NDH-dependent cyclic electron flow 5 )

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-25
Identity = 91/370 (24.59%), Postives = 160/370 (43.24%), Query Frame = 0


Query: 2   ASLVCLPLPKLSIVRASSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTV 61
           +S   LPL     ++   SS   S+S S S   P+  + L  +F   G  F         
Sbjct: 26  SSFASLPLQFHKNIKRLESSVPPSASASASPAFPIDVEYLRREFSGHGATFEDIGETCIA 85

Query: 62  DLTVRNGSSLRLHISDAHITSYKPKVY----------WKDDGFEEVLFTTPAANGGKGGI 121
            L + NGSS  + ++   ITSYK +V+          W +   EEV+         +GG+
Sbjct: 86  RLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEEEEVVI--------RGGV 145

Query: 122 GLVINDASNSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSS---KQMEITYIVTLYSE 181
                  S++   S     SDW ++ +  D+ D +Q+EL  S    K++E+  I++L   
Sbjct: 146 -------SSAFRSSDSDEISDWRLQGISGDSKDCVQMELRRSDKKIKEIELKQIISLREN 205

Query: 182 SMATAVIVKNTGPKLLSLNS-AILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSP 241
           +++  + + N G   + L   +++S+      +     GLEG  +    P    F ++  
Sbjct: 206 TLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEGSDFVETTPFLPRFGVVQ- 265

Query: 242 TEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPS 301
                         G + +EK G    ++  +  L  + SR+Y               P 
Sbjct: 266 --------------GEKEEEKPGFGGEEESNYKQLNREMSRIYTC------------APK 325

Query: 302 KYETLDQGRELFFRVIRMGFEDIYLQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQW 358
            +  +D+GR     V R GFE++Y+ SPGS  + + K  ++C GP+S+L P++++ G  W
Sbjct: 326 SFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLLSPISLESGCVW 353

The following BLAST results are available for this feature:

BLAST of CmaCh06G017310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AQ8	1.1e-115	59.17	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thali...	[more]
Q9C503	2.1e-24	24.59	Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q40784	1.6e-05	32.89	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1	[more]

BLAST of CmaCh06G017310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64770.1	8.1e-117	59.17	NDH-dependent cyclic electron flow 1	[more]
AT1G64770.3	2.3e-87	56.04	NDH-dependent cyclic electron flow 1	[more]
AT1G64770.2	3.9e-87	56.61	NDH-dependent cyclic electron flow 1	[more]
AT1G55370.2	1.5e-25	24.59	NDH-dependent cyclic electron flow 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	2.70.98.10		coord: 56..358 e-value: 1.4E-24 score: 88.7
None	No IPR available	PANTHER	PTHR11122:SF18	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 2, CHLOROPLASTIC	coord: 23..358
None	No IPR available	PANTHER	PTHR11122	APOSPORY-ASSOCIATED PROTEIN C-RELATED	coord: 23..358
IPR011013	Galactose mutarotase-like domain superfamily	SUPERFAMILY	74650	Galactose mutarotase-like	coord: 50..353

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017310.1	CmaCh06G017310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0097552	mitochondrial double-strand break repair via homologous recombination
biological_process	GO:0007095	mitotic G2 DNA damage checkpoint signaling
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0030870	Mre11 complex
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0047938	glucose-6-phosphate 1-epimerase activity
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000014	single-stranded DNA endodeoxyribonuclease activity
molecular_function	GO:0003824	catalytic activity