CmaCh06G016560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Eukaryotic translation initiation factor 4C
Location	Cma_Chr06: 10253566 .. 10254492 (-)
RNA-Seq Expression	CmaCh06G016560
Synteny	CmaCh06G016560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATCTTGGGGTTTGTAATCTTGATGAAAAGTAATCATGATGATGCCCCAGTTTGAAATTGTTATTGAACATTCAAATTGCGACATGGCTCTTCGCAGCTCATGTTAGAAAACATTTTTTTTTCTCTCGCTGCTGCTTTAGTGGCTGGAATGAATACTTCTGTTCAAGAGTATCTTTATCCTAATTGTTTCCTTTATTTGTTGATTCTTGATGATCGTATATTTATGACATCTTTACATGGAATGTGTGGAATATTATCAGAGTCACTCTGTTCTGCGCCCCTGAGTTGTAGTAGCTAGGTATTGAAGGTACCAATCGTCTTATGGCTGTAAATTTGATCATTAGTTGTTTGTTTTCTTCATCTCATCGTGTGTGGTGGGTGCTTGGGAGTTGACTTCAATTTTCTGAACAATTGCATACCGGAAGAAAAAGGGCTTACTTCTAACATTACTGACTCAAAAGTGATAAATAGGTGCCTTGCCTGTTCTTGTAAGTTCTGTTTGGACGTTTGGTGCAATTGTTTTGTAATTTCTTTGCTTTCTTTCTGTTTATATTCTGTTTATCTTGATGCTAGTTGTTTAGTTTAGACTGATTTATATTATCTAAATCCAAATTATTTCAAGTGTGCAAAGTTGGAGTTTTACCTCATATTTTCTTTATGGCACGAACCGTGACTCTGTATGTTGGTGGTATTGCAACTGCTCATATTGCATTTCAAATGTAACACAGAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAACGTGAGCTCATGTTAG

mRNA sequence

ATGATTCATCTTGGGGTTTGTAATCTTGATGAAAAAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAACGTGAGCTCATGTTAG

Coding sequence (CDS)

ATGATTCATCTTGGGGTTTGTAATCTTGATGAAAAAACCGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTGGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAACGTGAGCTCATGTTAG

Protein sequence

MIHLGVCNLDEKTENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTNVSSC

Homology

[Close]

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-23
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT 71
          MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEA CIDGT
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGT 55

[Close]

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 9.0e-23
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT 71
          MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA C+DGT
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGT 55

[Close]

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Sbjct: 1  MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDG 54

[Close]

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Sbjct: 1  MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDG 54

[Close]

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG
Sbjct: 1  MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDG 54

[Close]

BLAST of CmaCh06G016560 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGT 71
          MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGT
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGT 55

[Close]

BLAST of CmaCh06G016560 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDG 54

[Close]

BLAST of CmaCh06G016560 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDG 54

[Close]

BLAST of CmaCh06G016560 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 16 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDG 70
          MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG
Sbjct: 1  MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDG 54

The following BLAST results are available for this feature:

BLAST of CmaCh06G016560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	1.8e-23	96.36	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	9.0e-23	92.73	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	7.9e-19	83.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	7.9e-19	83.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	7.9e-19	83.33	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of CmaCh06G016560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	7.5e-25	96.36	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	1.9e-23	92.59	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	1.9e-23	92.59	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.9e-23	92.59	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 17..75 e-value: 1.3E-21 score: 78.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR21668:SF11	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 16..71
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 16..71
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 37..75 score: 11.182532
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 17..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016560.1	CmaCh06G016560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding